Wall clock time and date at job start Tue Mar 31 2020 20:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.46986 * 2 1 4 4 C 1.53000 * 109.47158 * 119.99997 * 2 1 3 5 5 C 1.53005 * 109.47142 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47141 * 299.99644 * 5 4 2 7 7 H 1.09006 * 109.47262 * 300.00214 * 6 5 4 8 8 C 1.50692 * 109.47431 * 180.02562 * 6 5 4 9 9 O 1.21286 * 119.99875 * 240.00380 * 8 6 5 10 10 N 1.34773 * 120.00344 * 59.99780 * 8 6 5 11 11 C 1.47878 * 125.87305 * 359.93361 * 10 8 6 12 12 C 1.55024 * 104.91191 * 155.90125 * 11 10 8 13 13 C 1.54483 * 101.53684 * 36.46663 * 12 11 10 14 14 C 1.47177 * 125.66749 * 180.02562 * 10 8 6 15 15 C 1.52520 * 110.09806 * 206.97236 * 13 12 11 16 16 N 1.47303 * 108.39964 * 186.96415 * 15 13 12 17 17 C 1.36934 * 121.06815 * 229.41540 * 16 15 13 18 18 H 1.07997 * 120.00593 * 153.84961 * 17 16 15 19 19 C 1.38819 * 119.99824 * 333.84928 * 17 16 15 20 20 N 1.31617 * 120.00041 * 343.62629 * 19 17 16 21 21 Si 1.86803 * 119.99786 * 163.62023 * 19 17 16 22 22 H 1.48507 * 109.46811 * 90.00473 * 21 19 17 23 23 H 1.48498 * 109.46843 * 209.99821 * 21 19 17 24 24 H 1.48492 * 109.47150 * 330.00545 * 21 19 17 25 25 C 1.47171 * 117.86854 * 49.39549 * 16 15 13 26 26 C 1.53278 * 108.54756 * 308.86946 * 25 16 15 27 27 O 1.42063 * 110.38605 * 83.93070 * 13 12 11 28 28 C 1.53003 * 109.47265 * 59.99897 * 6 5 4 29 29 C 1.53002 * 109.47295 * 300.00439 * 28 6 5 30 30 H 1.09006 * 109.46991 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47717 * 300.00053 * 1 2 3 32 32 H 1.09000 * 109.46966 * 60.00453 * 1 2 3 33 33 H 1.09003 * 109.47149 * 299.99869 * 4 2 1 34 34 H 1.08996 * 109.47170 * 60.00116 * 4 2 1 35 35 H 1.09000 * 109.46950 * 179.97438 * 5 4 2 36 36 H 1.08996 * 109.47212 * 59.99873 * 5 4 2 37 37 H 1.09003 * 110.26133 * 37.08100 * 11 10 8 38 38 H 1.08996 * 110.52381 * 274.85054 * 11 10 8 39 39 H 1.08998 * 111.01261 * 278.40125 * 12 11 10 40 40 H 1.09000 * 111.01001 * 154.52953 * 12 11 10 41 41 H 1.09001 * 109.91172 * 62.14232 * 14 10 8 42 42 H 1.09005 * 109.90997 * 301.06387 * 14 10 8 43 43 H 1.09006 * 109.67776 * 306.68741 * 15 13 12 44 44 H 1.09002 * 109.68185 * 67.23479 * 15 13 12 45 45 H 0.96999 * 119.99951 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.62058 * 68.58286 * 25 16 15 47 47 H 1.08997 * 109.62219 * 188.95898 * 25 16 15 48 48 H 1.08996 * 109.51338 * 172.82271 * 26 25 16 49 49 H 1.09009 * 109.50800 * 292.91848 * 26 25 16 50 50 H 1.09006 * 109.46723 * 59.99986 * 28 6 5 51 51 H 1.08990 * 109.47643 * 179.97438 * 28 6 5 52 52 H 1.08993 * 109.47392 * 179.97438 * 29 28 6 53 53 H 1.08996 * 109.47008 * 300.00005 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5700 -0.7207 1.2496 6 6 4.0805 -1.4416 0.0004 7 1 3.7175 -2.4695 0.0002 8 6 5.5874 -1.4417 0.0010 9 8 6.1942 -0.9162 -0.9083 10 7 6.2610 -2.0254 1.0119 11 6 5.6561 -2.6993 2.1810 12 6 6.7403 -3.6913 2.6748 13 6 8.0342 -2.8863 2.4208 14 6 7.7255 -2.0977 1.1385 15 6 9.2064 -3.8358 2.1955 16 7 10.4433 -3.0390 2.1253 17 6 11.3387 -3.2126 1.1039 18 1 11.9870 -2.4004 0.8102 19 6 11.4131 -4.4327 0.4459 20 7 10.8774 -5.5061 0.9874 21 14 12.2733 -4.5509 -1.2080 22 1 13.7108 -4.8586 -0.9973 23 1 11.6492 -5.6304 -2.0144 24 1 12.1440 -3.2580 -1.9268 25 6 10.6857 -2.0500 3.1878 26 6 9.4385 -1.1704 3.3290 27 8 8.2901 -2.0057 3.5058 28 6 3.5705 -0.7205 -1.2489 29 6 2.0405 -0.7209 -1.2493 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6766 -0.2074 2.1392 34 1 1.6766 -1.7489 1.2492 35 1 3.9333 -1.2341 2.1398 36 1 3.9330 0.3071 1.2498 37 1 4.7568 -3.2381 1.8827 38 1 5.4219 -1.9746 2.9608 39 1 6.7284 -4.6082 2.0856 40 1 6.6171 -3.9086 3.7357 41 1 8.1418 -1.0929 1.2112 42 1 8.1477 -2.6127 0.2755 43 1 9.2711 -4.5419 3.0234 44 1 9.0653 -4.3778 1.2603 45 1 10.9290 -6.3585 0.5274 46 1 10.8795 -2.5642 4.1292 47 1 11.5446 -1.4328 2.9243 48 1 9.5499 -0.5168 4.1941 49 1 9.3153 -0.5664 2.4299 50 1 3.9335 0.3074 -1.2487 51 1 3.9345 -1.2337 -2.1388 52 1 1.6771 -0.2068 -2.1390 53 1 1.6775 -1.7487 -1.2494 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972643684.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:52 Heat of formation + Delta-G solvation = -89.930181 kcal Electronic energy + Delta-G solvation = -31397.291814 eV Core-core repulsion = 27460.885942 eV Total energy + Delta-G solvation = -3936.405872 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.82002 -40.57629 -38.84713 -37.55002 -36.30185 -33.94902 -33.30632 -32.83241 -31.65483 -30.43428 -29.39685 -28.24590 -26.93334 -25.08551 -24.73738 -23.57178 -22.77356 -22.52482 -20.81178 -20.48437 -20.14870 -18.91104 -18.19218 -17.80496 -16.98117 -16.67639 -16.45433 -16.15095 -15.85060 -15.71407 -15.33135 -15.19036 -15.08097 -14.99095 -14.64283 -14.49311 -14.30134 -13.99700 -13.51571 -13.39772 -13.35614 -13.19188 -13.02191 -13.01279 -12.82617 -12.73522 -12.50073 -12.35009 -12.32037 -12.20660 -12.16173 -11.98829 -11.89541 -11.79135 -11.55275 -11.22858 -11.18565 -10.89144 -10.82229 -10.70828 -10.52130 -9.72135 -8.75791 -7.95255 -5.39806 1.39040 1.42244 1.50822 1.57047 1.91830 2.42400 2.74496 3.18694 3.31971 3.48244 3.59736 3.72077 3.74801 3.76825 4.00468 4.12297 4.17243 4.20307 4.23781 4.26325 4.34562 4.40565 4.47208 4.51586 4.55538 4.58826 4.62990 4.67569 4.74277 4.79631 4.86918 4.89259 4.96354 4.99497 5.01590 5.03443 5.06904 5.13319 5.17549 5.19312 5.20965 5.24237 5.27575 5.34555 5.46420 5.48023 5.48462 5.56917 5.63828 6.25001 6.32816 6.51731 7.03612 7.09962 7.71764 8.24866 9.10733 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016536 B = 0.003141 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.878778 B = 8913.209943 C = 9800.978296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.060 0.940 4 C -0.105 4.105 5 C -0.113 4.113 6 C -0.089 4.089 7 H 0.117 0.883 8 C 0.518 3.482 9 O -0.597 6.597 10 N -0.614 5.614 11 C 0.106 3.894 12 C -0.114 4.114 13 C 0.094 3.906 14 C 0.108 3.892 15 C 0.173 3.827 16 N -0.615 5.615 17 C -0.262 4.262 18 H 0.065 0.935 19 C -0.045 4.045 20 N -0.930 5.930 21 Si 0.959 3.041 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.105 3.895 26 C 0.051 3.949 27 O -0.370 6.370 28 C -0.098 4.098 29 C -0.106 4.106 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.050 0.950 42 H 0.038 0.962 43 H 0.012 0.988 44 H 0.063 0.937 45 H 0.252 0.748 46 H 0.026 0.974 47 H 0.068 0.932 48 H 0.125 0.875 49 H 0.038 0.962 50 H 0.048 0.952 51 H 0.050 0.950 52 H 0.067 0.933 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.569 7.852 4.434 24.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.078 0.922 4 C -0.142 4.142 5 C -0.150 4.150 6 C -0.110 4.110 7 H 0.135 0.865 8 C 0.309 3.691 9 O -0.478 6.478 10 N -0.347 5.347 11 C -0.014 4.014 12 C -0.152 4.152 13 C 0.052 3.948 14 C -0.016 4.016 15 C 0.047 3.953 16 N -0.340 5.340 17 C -0.392 4.392 18 H 0.083 0.917 19 C -0.241 4.241 20 N -0.576 5.576 21 Si 0.787 3.213 22 H -0.206 1.206 23 H -0.216 1.216 24 H -0.204 1.204 25 C -0.020 4.020 26 C -0.027 4.027 27 O -0.288 6.288 28 C -0.136 4.136 29 C -0.143 4.143 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.130 0.870 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.133 0.867 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.030 0.970 44 H 0.082 0.918 45 H 0.061 0.939 46 H 0.044 0.956 47 H 0.086 0.914 48 H 0.143 0.857 49 H 0.057 0.943 50 H 0.067 0.933 51 H 0.069 0.931 52 H 0.086 0.914 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.389 8.021 4.001 24.117 hybrid contribution 1.787 -0.260 -1.441 2.310 sum -20.603 7.760 2.560 22.164 Atomic orbital electron populations 1.21787 0.94022 1.02318 1.01926 1.21181 0.96287 0.99230 0.94736 0.92183 1.21570 0.92741 1.01946 0.97949 1.21671 0.97577 1.00020 0.95758 1.21335 0.87237 1.03461 0.98950 0.86485 1.21358 0.91600 0.76471 0.79631 1.90671 1.71846 1.47659 1.37599 1.48836 1.06425 1.56062 1.23396 1.22768 0.96798 0.94930 0.86949 1.22792 0.90546 0.97433 1.04459 1.22436 0.96865 0.90343 0.85184 1.22074 0.81493 0.99709 0.98299 1.21020 0.83509 0.90977 0.99818 1.44379 1.20241 1.43528 1.25821 1.19430 1.15488 0.95414 1.08878 0.91685 1.25673 1.01096 0.94756 1.02552 1.70124 1.50267 0.98735 1.38425 0.85405 0.78350 0.77113 0.80426 1.20573 1.21629 1.20380 1.21767 0.97179 0.91897 0.91189 1.23122 0.85338 0.92263 1.01969 1.87668 1.46864 1.53157 1.41151 1.21318 0.96808 0.99803 0.95686 1.21580 0.92659 1.01707 0.98391 0.92006 0.92142 0.92769 0.90364 0.90204 0.89557 0.93072 0.86981 0.88866 0.89281 0.86721 0.93211 0.94395 0.96979 0.91846 0.93886 0.95595 0.91394 0.85742 0.94331 0.93303 0.93111 0.91386 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.19 71.98 0.66 -0.74 16 2 C -0.10 -1.23 2.72 -10.79 -0.03 -1.26 16 3 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.10 -1.21 5.20 30.60 0.16 -1.05 16 5 C -0.11 -1.86 5.02 30.59 0.15 -1.71 16 6 C -0.09 -1.92 1.88 -11.54 -0.02 -1.94 16 7 H 0.12 2.03 7.87 -2.38 -0.02 2.01 16 8 C 0.52 17.07 7.22 87.66 0.63 17.70 16 9 O -0.60 -25.76 16.31 -3.05 -0.05 -25.81 16 10 N -0.61 -19.61 3.34 -811.28 -2.71 -22.32 16 11 C 0.11 2.37 5.15 86.81 0.45 2.82 16 12 C -0.11 -3.13 6.21 31.79 0.20 -2.93 16 13 C 0.09 3.50 0.81 -10.22 -0.01 3.49 16 14 C 0.11 4.33 5.95 86.48 0.51 4.85 16 15 C 0.17 8.25 3.98 86.07 0.34 8.59 16 16 N -0.62 -31.22 2.97 -698.62 -2.07 -33.29 16 17 C -0.26 -14.68 9.66 84.04 0.81 -13.87 16 18 H 0.07 3.59 7.88 -2.91 -0.02 3.56 16 19 C -0.04 -2.54 4.96 84.86 0.42 -2.12 16 20 N -0.93 -54.60 11.13 21.65 0.24 -54.36 16 21 Si 0.96 46.18 29.58 68.60 2.03 48.21 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 24 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 25 C 0.11 4.36 6.72 86.34 0.58 4.94 16 26 C 0.05 1.74 6.75 72.08 0.49 2.23 16 27 O -0.37 -13.18 10.26 -148.97 -1.53 -14.71 16 28 C -0.10 -2.18 4.49 30.60 0.14 -2.04 16 29 C -0.11 -1.59 5.21 30.60 0.16 -1.43 16 30 H 0.06 0.53 8.14 -2.38 -0.02 0.52 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 1.25 5.01 -2.39 -0.01 1.24 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.11 1.70 7.40 -2.39 -0.02 1.69 16 38 H 0.09 1.79 7.09 -2.39 -0.02 1.77 16 39 H 0.09 2.49 8.01 -2.39 -0.02 2.48 16 40 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.05 2.15 6.00 -2.39 -0.01 2.14 16 42 H 0.04 1.83 7.61 -2.38 -0.02 1.81 16 43 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 44 H 0.06 3.43 5.92 -2.39 -0.01 3.42 16 45 H 0.25 14.33 8.31 -92.71 -0.77 13.55 16 46 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.07 2.70 7.96 -2.39 -0.02 2.68 16 48 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 49 H 0.04 1.41 6.22 -2.38 -0.01 1.40 16 50 H 0.05 1.26 8.10 -2.38 -0.02 1.24 16 51 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 52 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 53 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -72.74 393.37 2.42 -70.31 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.87 Total: 16.45 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 5.65 Total: 15.52 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -4.54 Total: -109.97 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -1.58 Total: -40.53 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -72.74 2.42 -70.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972643684.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.616 kcal (2) G-P(sol) polarization free energy of solvation -72.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds