Wall clock time and date at job start Tue Mar 31 2020 20:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47301 * 2 1 4 4 C 1.53004 * 109.47080 * 120.00250 * 2 1 3 5 5 C 1.52999 * 109.47422 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46712 * 300.00155 * 5 4 2 7 7 H 1.09002 * 109.47523 * 299.99449 * 6 5 4 8 8 C 1.50709 * 109.46824 * 179.97438 * 6 5 4 9 9 O 1.21275 * 119.99863 * 274.05149 * 8 6 5 10 10 N 1.34771 * 119.99784 * 94.05355 * 8 6 5 11 11 C 1.47485 * 125.66847 * 6.01427 * 10 8 6 12 12 C 1.55025 * 104.90024 * 203.99013 * 11 10 8 13 13 C 1.54520 * 101.52433 * 323.61931 * 12 11 10 14 14 C 1.47192 * 125.66071 * 185.98930 * 10 8 6 15 15 C 1.52507 * 110.05750 * 153.10934 * 13 12 11 16 16 N 1.47307 * 108.40849 * 72.12507 * 15 13 12 17 17 C 1.36931 * 121.06404 * 229.38432 * 16 15 13 18 18 H 1.08008 * 119.99397 * 154.26426 * 17 16 15 19 19 C 1.38808 * 120.00273 * 334.27501 * 17 16 15 20 20 N 1.31620 * 119.99895 * 342.15832 * 19 17 16 21 21 Si 1.86804 * 120.00275 * 162.16493 * 19 17 16 22 22 H 1.48499 * 109.47107 * 59.99293 * 21 19 17 23 23 H 1.48489 * 109.47302 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46892 * 299.99678 * 21 19 17 25 25 C 1.47166 * 117.87079 * 49.37157 * 16 15 13 26 26 C 1.53287 * 108.54522 * 308.86410 * 25 16 15 27 27 O 1.42071 * 110.33284 * 276.09224 * 13 12 11 28 28 C 1.52992 * 109.47750 * 59.99965 * 6 5 4 29 29 C 1.52997 * 109.47135 * 239.99843 * 2 1 3 30 30 H 1.08998 * 109.47301 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46830 * 300.00294 * 1 2 3 32 32 H 1.09001 * 109.46775 * 59.99723 * 1 2 3 33 33 H 1.08997 * 109.47150 * 300.00158 * 4 2 1 34 34 H 1.09004 * 109.46890 * 59.99468 * 4 2 1 35 35 H 1.08992 * 109.47282 * 179.97438 * 5 4 2 36 36 H 1.08998 * 109.47000 * 59.99725 * 5 4 2 37 37 H 1.09001 * 110.35194 * 322.84447 * 11 10 8 38 38 H 1.08997 * 110.35188 * 85.02310 * 11 10 8 39 39 H 1.08996 * 111.01130 * 205.56288 * 12 11 10 40 40 H 1.08997 * 111.01353 * 81.67843 * 12 11 10 41 41 H 1.09004 * 109.90893 * 59.16596 * 14 10 8 42 42 H 1.08996 * 109.91168 * 297.90421 * 14 10 8 43 43 H 1.08998 * 109.67892 * 312.39510 * 15 13 12 44 44 H 1.09000 * 109.70904 * 191.87385 * 15 13 12 45 45 H 0.97000 * 119.99847 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.62122 * 189.15143 * 25 16 15 47 47 H 1.08994 * 109.78521 * 68.68231 * 25 16 15 48 48 H 1.08994 * 109.51458 * 293.00342 * 26 25 16 49 49 H 1.08996 * 109.55648 * 172.86298 * 26 25 16 50 50 H 1.08998 * 109.47191 * 59.99677 * 28 6 5 51 51 H 1.08998 * 109.47836 * 179.97438 * 28 6 5 52 52 H 1.09005 * 109.46924 * 60.00041 * 29 2 1 53 53 H 1.09004 * 109.47129 * 300.00712 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2490 6 6 4.0794 -1.4435 -0.0003 7 1 3.7157 -2.4711 -0.0001 8 6 5.5865 -1.4435 -0.0009 9 8 6.1927 -0.4993 -0.4609 10 7 6.2604 -2.4930 0.5098 11 6 5.6586 -3.7532 0.9839 12 6 6.6843 -4.3298 1.9933 13 6 8.0237 -3.9321 1.3335 14 6 7.7196 -2.5719 0.6864 15 6 9.1082 -3.7895 2.3962 16 7 9.4651 -5.1343 2.8800 17 6 9.5212 -5.4113 4.2198 18 1 9.3687 -6.4219 4.5691 19 6 9.7737 -4.3934 5.1291 20 7 10.2990 -3.2588 4.7176 21 14 9.3684 -4.6337 6.9367 22 1 10.1376 -5.7878 7.4673 23 1 9.7311 -3.4081 7.6925 24 1 7.9146 -4.8966 7.0873 25 6 9.7590 -6.1707 1.8773 26 6 8.6106 -6.2071 0.8627 27 8 8.3930 -4.8888 0.3503 28 6 3.5695 -0.7223 -1.2495 29 6 2.0400 -0.7213 -1.2492 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6766 -0.2076 2.1392 34 1 1.6765 -1.7490 1.2492 35 1 3.9333 -1.2354 2.1391 36 1 3.9337 0.3056 1.2488 37 1 4.7081 -3.5563 1.4800 38 1 5.5153 -4.4417 0.1512 39 1 6.5921 -5.4133 2.0682 40 1 6.5760 -3.8612 2.9714 41 1 8.0587 -1.7668 1.3383 42 1 8.2150 -2.5025 -0.2819 43 1 8.7334 -3.1888 3.2248 44 1 9.9863 -3.3102 1.9633 45 1 10.4758 -2.5476 5.3531 46 1 9.8452 -7.1404 2.3676 47 1 10.6922 -5.9350 1.3658 48 1 7.7036 -6.5618 1.3520 49 1 8.8687 -6.8781 0.0435 50 1 3.9332 0.3052 -1.2497 51 1 3.9328 -1.2360 -2.1395 52 1 1.6766 -0.2074 -2.1392 53 1 1.6765 -1.7489 -1.2492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972643685.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:56 Heat of formation + Delta-G solvation = -90.438905 kcal Electronic energy + Delta-G solvation = -31160.881946 eV Core-core repulsion = 27224.454014 eV Total energy + Delta-G solvation = -3936.427932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.78724 -40.61775 -38.90392 -37.49387 -36.27226 -33.88489 -33.25728 -32.66575 -31.71892 -30.88721 -29.22659 -28.22440 -26.88650 -25.29030 -24.18799 -23.61754 -23.24673 -22.43640 -20.76847 -20.52360 -19.95269 -18.96682 -18.33870 -17.57565 -17.03537 -16.59421 -16.39891 -16.14037 -15.79093 -15.68534 -15.32977 -15.21926 -15.16322 -15.12729 -14.56485 -14.45622 -14.23269 -13.85428 -13.69258 -13.61227 -13.38284 -13.14628 -13.13628 -13.06184 -12.81501 -12.61906 -12.50951 -12.35050 -12.31358 -12.20015 -12.02931 -11.95876 -11.81427 -11.78508 -11.61250 -11.26474 -11.16190 -10.93941 -10.81981 -10.64873 -10.46315 -9.75163 -8.74641 -7.90432 -5.36117 1.47335 1.48918 1.53231 1.56170 1.87469 2.47915 2.74446 3.21484 3.32096 3.50984 3.57183 3.69019 3.74902 3.87595 3.95892 4.12665 4.16855 4.20931 4.23576 4.30763 4.37133 4.40500 4.49084 4.51393 4.52698 4.57299 4.60522 4.63387 4.68413 4.76685 4.84734 4.90355 4.93280 5.01306 5.02876 5.03244 5.08145 5.09921 5.14174 5.15174 5.19819 5.25089 5.26395 5.33666 5.44935 5.45730 5.48208 5.61430 5.62587 6.28104 6.37126 6.49324 7.05072 7.07590 7.74943 8.29830 9.15907 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014782 B = 0.003055 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.765656 B = 9162.947033 C =10109.506994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.059 0.941 4 C -0.105 4.105 5 C -0.106 4.106 6 C -0.090 4.090 7 H 0.114 0.886 8 C 0.525 3.475 9 O -0.589 6.589 10 N -0.614 5.614 11 C 0.108 3.892 12 C -0.137 4.137 13 C 0.096 3.904 14 C 0.129 3.871 15 C 0.176 3.824 16 N -0.607 5.607 17 C -0.258 4.258 18 H 0.077 0.923 19 C -0.051 4.051 20 N -0.938 5.938 21 Si 0.967 3.033 22 H -0.276 1.276 23 H -0.300 1.300 24 H -0.272 1.272 25 C 0.101 3.899 26 C 0.053 3.947 27 O -0.383 6.383 28 C -0.101 4.101 29 C -0.105 4.105 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.067 0.933 44 H -0.012 1.012 45 H 0.249 0.751 46 H 0.076 0.924 47 H 0.011 0.989 48 H 0.065 0.935 49 H 0.119 0.881 50 H 0.052 0.948 51 H 0.060 0.940 52 H 0.072 0.928 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.030 -0.786 -9.606 23.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.078 0.922 4 C -0.142 4.142 5 C -0.144 4.144 6 C -0.111 4.111 7 H 0.132 0.868 8 C 0.315 3.685 9 O -0.470 6.470 10 N -0.347 5.347 11 C -0.013 4.013 12 C -0.175 4.175 13 C 0.055 3.945 14 C 0.005 3.995 15 C 0.049 3.951 16 N -0.332 5.332 17 C -0.388 4.388 18 H 0.095 0.905 19 C -0.246 4.246 20 N -0.584 5.584 21 Si 0.795 3.205 22 H -0.201 1.201 23 H -0.226 1.226 24 H -0.197 1.197 25 C -0.024 4.024 26 C -0.024 4.024 27 O -0.303 6.303 28 C -0.139 4.139 29 C -0.142 4.142 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.006 0.994 45 H 0.058 0.942 46 H 0.094 0.906 47 H 0.029 0.971 48 H 0.083 0.917 49 H 0.137 0.863 50 H 0.071 0.929 51 H 0.078 0.922 52 H 0.091 0.909 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.683 -0.082 -9.966 22.959 hybrid contribution 1.206 0.354 1.340 1.837 sum -19.477 0.272 -8.625 21.303 Atomic orbital electron populations 1.21790 0.93944 1.02383 1.01932 1.21177 0.96345 0.99228 0.94696 0.92239 1.21563 0.92451 1.02008 0.98185 1.21456 0.97710 0.99878 0.95387 1.21350 0.87532 1.03475 0.98711 0.86832 1.21231 0.91388 0.80078 0.75771 1.90653 1.71690 1.36555 1.48085 1.48740 1.06880 1.17082 1.62000 1.22556 0.97243 0.84060 0.97450 1.23079 0.93300 1.02879 0.98230 1.22266 0.95306 0.88206 0.88770 1.21509 0.82176 0.95621 1.00186 1.20884 0.92748 0.87469 0.94008 1.44324 1.79686 1.07233 1.01932 1.19484 1.41745 0.95274 0.82255 0.90542 1.25797 0.99340 0.97358 1.02091 1.70198 1.46128 1.07043 1.35062 0.85350 0.78613 0.76510 0.80061 1.20134 1.22609 1.19739 1.21812 0.95892 0.93410 0.91274 1.23202 0.97904 0.83327 0.98011 1.87681 1.89386 1.19509 1.33674 1.21383 0.97067 1.00157 0.95329 1.21559 0.92712 1.01810 0.98140 0.91892 0.92503 0.92411 0.90948 0.90152 0.91520 0.93087 0.87568 0.89401 0.88293 0.91180 0.92022 0.91907 0.91498 0.99390 0.94152 0.90564 0.97056 0.91690 0.86276 0.92915 0.92158 0.90924 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.19 71.98 0.66 -0.81 16 2 C -0.10 -1.29 2.72 -10.79 -0.03 -1.32 16 3 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.10 -1.45 5.20 30.60 0.16 -1.29 16 5 C -0.11 -2.09 5.19 30.59 0.16 -1.93 16 6 C -0.09 -1.90 2.05 -11.54 -0.02 -1.93 16 7 H 0.11 1.84 6.76 -2.39 -0.02 1.82 16 8 C 0.52 16.42 6.85 87.66 0.60 17.02 16 9 O -0.59 -23.59 16.59 -3.02 -0.05 -23.64 16 10 N -0.61 -19.11 3.33 -812.28 -2.71 -21.81 16 11 C 0.11 2.62 6.36 86.88 0.55 3.17 16 12 C -0.14 -4.26 5.91 31.80 0.19 -4.07 16 13 C 0.10 3.64 0.83 -10.22 -0.01 3.63 16 14 C 0.13 4.84 6.25 86.47 0.54 5.38 16 15 C 0.18 8.47 3.95 86.06 0.34 8.81 16 16 N -0.61 -29.42 2.94 -698.65 -2.06 -31.48 16 17 C -0.26 -13.48 9.65 84.03 0.81 -12.67 16 18 H 0.08 3.81 7.89 -2.91 -0.02 3.78 16 19 C -0.05 -2.74 4.93 84.86 0.42 -2.32 16 20 N -0.94 -55.10 11.19 21.65 0.24 -54.86 16 21 Si 0.97 43.37 29.59 68.60 2.03 45.40 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 23 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 C 0.10 4.00 6.72 86.35 0.58 4.58 16 26 C 0.05 1.64 6.76 72.08 0.49 2.13 16 27 O -0.38 -13.91 10.22 -148.98 -1.52 -15.43 16 28 C -0.10 -2.04 4.85 30.58 0.15 -1.89 16 29 C -0.10 -1.44 5.20 30.58 0.16 -1.28 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.11 1.90 7.23 -2.39 -0.02 1.88 16 38 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.10 2.88 5.98 -2.39 -0.01 2.87 16 40 H 0.07 2.43 7.86 -2.39 -0.02 2.41 16 41 H 0.06 2.55 7.79 -2.38 -0.02 2.53 16 42 H 0.06 2.47 8.06 -2.39 -0.02 2.45 16 43 H 0.07 3.60 6.00 -2.39 -0.01 3.59 16 44 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 45 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 46 H 0.08 2.76 7.96 -2.39 -0.02 2.74 16 47 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.06 1.85 6.13 -2.39 -0.01 1.84 16 49 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 50 H 0.05 1.29 7.85 -2.39 -0.02 1.27 16 51 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 52 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 53 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -69.30 397.76 2.54 -66.76 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.86 Total: 19.86 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 5.74 Total: 15.21 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -4.52 Total: -108.15 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -1.57 Total: -39.07 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -69.30 2.54 -66.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972643685.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.679 kcal (2) G-P(sol) polarization free energy of solvation -69.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds