Wall clock time and date at job start Tue Mar 31 2020 20:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.27328 * 2 1 4 4 C 1.54947 * 110.39276 * 237.85661 * 2 1 3 5 5 C 1.55454 * 100.98813 * 204.64543 * 4 2 1 6 6 C 1.54377 * 102.18607 * 34.03692 * 5 4 2 7 7 H 1.09009 * 109.83078 * 98.29576 * 6 5 4 8 8 C 1.52990 * 109.83239 * 219.17865 * 6 5 4 9 9 C 1.53005 * 109.47603 * 184.81418 * 8 6 5 10 10 C 1.50696 * 109.47590 * 180.02562 * 9 8 6 11 11 O 1.21283 * 119.99821 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00491 * 179.97438 * 10 9 8 13 13 C 1.47180 * 135.98735 * 359.63714 * 12 10 9 14 14 C 1.53194 * 87.73218 * 153.42023 * 13 12 10 15 15 C 1.47159 * 135.99935 * 179.97438 * 12 10 9 16 16 C 1.52510 * 114.08908 * 139.65786 * 14 13 12 17 17 C 1.53206 * 109.35673 * 190.14875 * 16 14 13 18 18 C 1.53140 * 109.35358 * 301.10486 * 17 16 14 19 19 N 1.46893 * 109.11038 * 56.51520 * 18 17 16 20 20 C 1.36940 * 120.70114 * 124.61842 * 19 18 17 21 21 H 1.07997 * 119.99974 * 332.82965 * 20 19 18 22 22 C 1.38810 * 120.00328 * 152.82882 * 20 19 18 23 23 N 1.31628 * 119.99696 * 343.30906 * 22 20 19 24 24 Si 1.86800 * 120.00346 * 163.30875 * 22 20 19 25 25 H 1.48499 * 109.46909 * 59.99860 * 24 22 20 26 26 H 1.48497 * 109.47385 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.46982 * 300.00203 * 24 22 20 28 28 C 1.47149 * 118.60270 * 304.59530 * 19 18 17 29 29 O 1.43236 * 107.66559 * 338.74146 * 6 5 4 30 30 H 1.08997 * 109.47004 * 299.36382 * 1 2 3 31 31 H 1.09005 * 109.47098 * 59.35749 * 1 2 3 32 32 H 1.08993 * 109.47122 * 179.36476 * 1 2 3 33 33 H 1.09000 * 111.12125 * 322.51426 * 4 2 1 34 34 H 1.09000 * 111.12709 * 86.63713 * 4 2 1 35 35 H 1.09002 * 110.83572 * 275.88726 * 5 4 2 36 36 H 1.08999 * 110.92156 * 152.22838 * 5 4 2 37 37 H 1.09006 * 109.47017 * 64.81774 * 8 6 5 38 38 H 1.09000 * 109.47789 * 304.81873 * 8 6 5 39 39 H 1.08999 * 109.46900 * 300.00201 * 9 8 6 40 40 H 1.08997 * 109.46891 * 60.00032 * 9 8 6 41 41 H 1.08998 * 113.49041 * 268.10627 * 13 12 10 42 42 H 1.09004 * 113.49679 * 38.62574 * 13 12 10 43 43 H 1.08996 * 113.49454 * 321.37766 * 15 12 10 44 44 H 1.09006 * 113.49249 * 91.88831 * 15 12 10 45 45 H 1.08996 * 109.48972 * 310.11865 * 16 14 13 46 46 H 1.09008 * 109.48654 * 70.18695 * 16 14 13 47 47 H 1.09000 * 109.48890 * 181.14202 * 17 16 14 48 48 H 1.08995 * 109.49183 * 61.06982 * 17 16 14 49 49 H 1.09004 * 109.53422 * 296.62647 * 18 17 16 50 50 H 1.09004 * 109.59301 * 176.44143 * 18 17 16 51 51 H 0.96999 * 119.99449 * 179.97438 * 23 22 20 52 52 H 1.09001 * 109.63574 * 291.54194 * 28 19 18 53 53 H 1.09004 * 109.81027 * 171.02629 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0699 -0.7727 -1.2297 5 6 3.4733 -1.2022 -0.7171 6 6 3.2126 -1.4393 0.7859 7 1 3.0656 -2.5032 0.9724 8 6 4.3990 -0.9280 1.6054 9 6 4.1871 -1.2743 3.0806 10 6 5.3554 -0.7702 3.8880 11 8 6.2676 -0.1905 3.3377 12 7 5.3862 -0.9625 5.2216 13 6 4.5053 -1.5873 6.2215 14 6 5.7531 -1.8404 7.0734 15 6 6.3123 -0.6348 6.3173 16 6 5.5471 -1.6016 8.5656 17 6 6.9033 -1.6358 9.2774 18 6 7.5675 -2.9949 9.0387 19 7 7.6845 -3.2257 7.5928 20 6 8.8995 -3.5023 7.0249 21 1 9.8063 -3.1417 7.4874 22 6 8.9656 -4.2463 5.8548 23 7 7.9279 -4.9574 5.4677 24 14 10.5272 -4.2381 4.8297 25 1 11.6573 -4.7509 5.6452 26 1 10.3420 -5.1054 3.6386 27 1 10.8235 -2.8509 4.3901 28 6 6.4684 -3.1540 6.7673 29 8 2.0287 -0.7157 1.1412 30 1 -0.3633 0.5039 0.8956 31 1 -0.3633 0.5238 -0.8842 32 1 -0.3633 -1.0275 -0.0114 33 1 1.4505 -1.6421 -1.4503 34 1 2.1509 -0.1203 -2.0992 35 1 4.2006 -0.4036 -0.8634 36 1 3.8011 -2.1208 -1.2037 37 1 4.4785 0.1534 1.4940 38 1 5.3159 -1.3983 1.2500 39 1 3.2703 -0.8040 3.4361 40 1 4.1075 -2.3557 3.1922 41 1 3.8023 -0.8901 6.6773 42 1 4.0259 -2.5003 5.8684 43 1 7.3624 -0.7416 6.0452 44 1 6.0956 0.3188 6.7988 45 1 5.0813 -0.6279 8.7171 46 1 4.9028 -2.3808 8.9730 47 1 6.7566 -1.4855 10.3469 48 1 7.5412 -0.8450 8.8828 49 1 6.9591 -3.7814 9.4853 50 1 8.5597 -3.0011 9.4901 51 1 7.9740 -5.4770 4.6498 52 1 5.8136 -3.9920 7.0063 53 1 6.7362 -3.1879 5.7113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982159535.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:21 Heat of formation + Delta-G solvation = -58.590909 kcal Electronic energy + Delta-G solvation = -30460.687807 eV Core-core repulsion = 26525.640908 eV Total energy + Delta-G solvation = -3935.046900 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.86624 -40.67825 -39.57762 -37.42604 -34.89249 -34.72134 -33.19257 -32.29853 -31.76624 -31.06652 -28.32117 -27.33128 -26.95408 -26.44435 -24.01452 -23.82019 -22.47846 -22.25172 -21.35197 -20.16855 -19.41415 -18.55459 -18.08008 -17.93472 -17.08735 -16.82460 -16.74554 -16.47326 -15.78214 -15.60732 -15.32552 -15.23287 -14.77755 -14.71637 -14.59283 -14.25985 -14.14412 -13.85705 -13.67705 -13.46493 -13.32515 -13.21446 -13.09912 -12.96089 -12.74023 -12.65375 -12.62089 -12.58777 -12.30268 -12.09651 -12.00907 -11.84693 -11.72392 -11.71448 -11.63311 -11.47434 -11.30728 -10.97197 -10.68189 -10.53428 -10.45034 -9.65537 -8.67720 -7.90773 -5.32058 1.36873 1.42638 1.46088 1.62694 1.90552 2.45836 2.81994 3.21230 3.36590 3.41935 3.57960 3.77165 3.83430 3.87648 3.99985 4.07925 4.08750 4.16993 4.23118 4.32956 4.35005 4.38698 4.44882 4.49798 4.54521 4.58265 4.64021 4.65528 4.72535 4.79788 4.81748 4.87923 4.89443 4.91315 4.95237 5.04359 5.06027 5.09397 5.11587 5.19318 5.20354 5.30354 5.30482 5.34018 5.36543 5.49974 5.57783 5.68588 5.76272 6.15827 6.37193 6.82321 7.12966 7.14141 7.87687 8.36397 9.14761 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012951 B = 0.003014 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.484895 B = 9288.885906 C =10753.540359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.063 3.937 3 H 0.065 0.935 4 C -0.143 4.143 5 C -0.153 4.153 6 C 0.084 3.916 7 H 0.086 0.914 8 C -0.106 4.106 9 C -0.116 4.116 10 C 0.527 3.473 11 O -0.601 6.601 12 N -0.647 5.647 13 C 0.118 3.882 14 C -0.107 4.107 15 C 0.116 3.884 16 C -0.085 4.085 17 C -0.125 4.125 18 C 0.137 3.863 19 N -0.609 5.609 20 C -0.256 4.256 21 H 0.062 0.938 22 C -0.046 4.046 23 N -0.927 5.927 24 Si 0.950 3.050 25 H -0.269 1.269 26 H -0.293 1.293 27 H -0.292 1.292 28 C 0.211 3.789 29 O -0.392 6.392 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.082 0.918 43 H 0.032 0.968 44 H 0.103 0.897 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.048 0.952 49 H 0.020 0.980 50 H 0.046 0.954 51 H 0.247 0.753 52 H 0.003 0.997 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.936 9.554 -5.694 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.006 3.994 3 H 0.083 0.917 4 C -0.181 4.181 5 C -0.191 4.191 6 C 0.026 3.974 7 H 0.104 0.896 8 C -0.144 4.144 9 C -0.155 4.155 10 C 0.320 3.680 11 O -0.483 6.483 12 N -0.380 5.380 13 C -0.005 4.005 14 C -0.110 4.110 15 C -0.006 4.006 16 C -0.123 4.123 17 C -0.164 4.164 18 C 0.012 3.988 19 N -0.332 5.332 20 C -0.386 4.386 21 H 0.080 0.920 22 C -0.242 4.242 23 N -0.574 5.574 24 Si 0.779 3.221 25 H -0.195 1.195 26 H -0.219 1.219 27 H -0.219 1.219 28 C 0.085 3.915 29 O -0.312 6.312 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.131 0.869 40 H 0.116 0.884 41 H 0.142 0.858 42 H 0.101 0.899 43 H 0.051 0.949 44 H 0.121 0.879 45 H 0.109 0.891 46 H 0.093 0.907 47 H 0.107 0.893 48 H 0.067 0.933 49 H 0.038 0.962 50 H 0.065 0.935 51 H 0.056 0.944 52 H 0.021 0.979 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.552 9.762 -6.132 20.999 hybrid contribution 1.657 -0.365 -0.901 1.921 sum -15.895 9.396 -7.033 19.759 Atomic orbital electron populations 1.21867 0.92519 1.02938 1.03004 1.23168 0.95786 0.95484 0.85000 0.91701 1.23331 0.95204 1.01238 0.98296 1.23210 0.98571 1.03414 0.93862 1.22730 0.84228 0.96138 0.94281 0.89616 1.21668 0.98014 1.01578 0.93181 1.21502 0.95884 1.03086 0.95031 1.21029 0.88342 0.78117 0.80561 1.90634 1.41079 1.45895 1.70729 1.49763 1.25744 1.57870 1.04630 1.23312 0.93754 0.98241 0.85145 1.22456 0.95889 0.96034 0.96604 1.22951 0.94007 0.98874 0.84801 1.21246 0.97258 1.02915 0.90868 1.21910 0.96666 0.97143 1.00652 1.21100 0.98357 0.95431 0.83911 1.44282 1.04287 1.82028 1.02650 1.19376 0.86249 1.25843 1.07154 0.92035 1.25599 0.99689 0.97116 1.01777 1.70129 1.31668 1.31253 1.24311 0.85594 0.80951 0.76824 0.78700 1.19452 1.21870 1.21939 1.20108 0.85763 0.90257 0.95346 1.88416 1.42016 1.65147 1.35634 0.92428 0.89441 0.92002 0.89496 0.88363 0.90664 0.88817 0.92196 0.91831 0.86915 0.88416 0.85768 0.89934 0.94914 0.87931 0.89072 0.90681 0.89342 0.93308 0.96211 0.93499 0.94413 0.97913 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.63 71.98 0.69 -1.23 16 2 C 0.06 1.06 4.07 31.26 0.13 1.19 16 3 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 4 C -0.14 -1.94 6.58 32.10 0.21 -1.73 16 5 C -0.15 -2.64 6.56 31.91 0.21 -2.43 16 6 C 0.08 1.84 3.51 31.06 0.11 1.94 16 7 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 8 C -0.11 -2.95 4.07 30.59 0.12 -2.83 16 9 C -0.12 -3.37 5.44 29.85 0.16 -3.21 16 10 C 0.53 20.43 8.08 87.66 0.71 21.14 16 11 O -0.60 -28.61 16.76 -3.04 -0.05 -28.66 16 12 N -0.65 -23.17 3.48 -857.45 -2.99 -26.16 16 13 C 0.12 3.22 7.60 83.43 0.63 3.85 16 14 C -0.11 -3.63 0.96 -52.42 -0.05 -3.68 16 15 C 0.12 4.25 7.53 83.33 0.63 4.88 16 16 C -0.09 -2.21 5.11 30.50 0.16 -2.06 16 17 C -0.12 -3.68 6.03 30.71 0.19 -3.50 16 18 C 0.14 5.43 6.45 86.35 0.56 5.98 16 19 N -0.61 -30.37 3.01 -699.69 -2.10 -32.47 16 20 C -0.26 -14.46 9.60 84.03 0.81 -13.65 16 21 H 0.06 3.43 7.88 -2.91 -0.02 3.41 16 22 C -0.05 -2.68 4.93 84.86 0.42 -2.26 16 23 N -0.93 -56.07 11.16 21.65 0.24 -55.82 16 24 Si 0.95 47.86 29.59 68.60 2.03 49.89 16 25 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 26 H -0.29 -14.72 7.11 99.48 0.71 -14.02 16 27 H -0.29 -15.02 7.11 99.48 0.71 -14.31 16 28 C 0.21 9.89 4.42 86.15 0.38 10.27 16 29 O -0.39 -8.95 10.32 -148.98 -1.54 -10.49 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 1.05 8.06 -2.39 -0.02 1.03 16 34 H 0.10 0.99 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.36 7.85 -2.39 -0.02 1.34 16 36 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.79 8.10 -2.38 -0.02 1.77 16 38 H 0.06 1.96 8.10 -2.39 -0.02 1.94 16 39 H 0.11 2.86 7.89 -2.39 -0.02 2.84 16 40 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.12 2.36 8.10 -2.39 -0.02 2.34 16 42 H 0.08 2.20 8.12 -2.38 -0.02 2.18 16 43 H 0.03 1.51 8.11 -2.39 -0.02 1.49 16 44 H 0.10 3.05 8.06 -2.38 -0.02 3.03 16 45 H 0.09 1.76 8.10 -2.39 -0.02 1.74 16 46 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 47 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.05 1.55 8.02 -2.39 -0.02 1.53 16 49 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 50 H 0.05 1.86 7.93 -2.38 -0.02 1.85 16 51 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 52 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 53 H 0.05 2.60 5.94 -2.39 -0.01 2.58 16 Total: -1.00 -76.03 412.46 2.50 -73.53 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.85 Total: 17.50 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 6.06 Total: 12.68 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -4.85 Total: -114.45 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -1.59 Total: -39.15 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal Total: -76.03 2.50 -73.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982159535.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.934 kcal (2) G-P(sol) polarization free energy of solvation -76.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds