Wall clock time and date at job start Tue Mar 31 2020 20:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.86738 * 2 1 4 4 C 1.54097 * 109.87739 * 121.15534 * 2 1 3 5 5 C 1.54996 * 104.25138 * 121.59507 * 4 2 1 6 6 C 1.54996 * 102.00988 * 20.66631 * 5 4 2 7 7 H 1.09002 * 110.62093 * 81.75325 * 6 5 4 8 8 C 1.52998 * 110.61660 * 204.59933 * 6 5 4 9 9 C 1.53006 * 109.47176 * 182.81863 * 8 6 5 10 10 C 1.50694 * 109.47115 * 179.97438 * 9 8 6 11 11 O 1.21287 * 120.00213 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00131 * 180.02562 * 10 9 8 13 13 C 1.47666 * 134.45777 * 179.97438 * 12 10 9 14 14 C 1.53461 * 85.97041 * 155.69745 * 13 12 10 15 15 C 1.47674 * 134.44992 * 359.97438 * 12 10 9 16 16 C 1.52640 * 113.67120 * 137.87611 * 14 13 12 17 17 C 1.53190 * 109.37222 * 74.07780 * 16 14 13 18 18 C 1.53187 * 109.32428 * 59.03065 * 17 16 14 19 19 N 1.46899 * 109.10648 * 303.54435 * 18 17 16 20 20 C 1.36935 * 120.69179 * 235.34954 * 19 18 17 21 21 H 1.07994 * 120.00099 * 26.87845 * 20 19 18 22 22 C 1.38810 * 119.99684 * 206.88302 * 20 19 18 23 23 N 1.31612 * 120.00641 * 17.06238 * 22 20 19 24 24 Si 1.86801 * 119.99776 * 197.06414 * 22 20 19 25 25 H 1.48501 * 109.47361 * 89.99590 * 24 22 20 26 26 H 1.48502 * 109.47356 * 210.00195 * 24 22 20 27 27 H 1.48504 * 109.47206 * 329.99954 * 24 22 20 28 28 C 1.47117 * 118.61560 * 55.37246 * 19 18 17 29 29 O 1.43739 * 109.88063 * 238.99079 * 2 1 3 30 30 H 1.08999 * 109.46693 * 179.55564 * 1 2 3 31 31 H 1.08998 * 109.47313 * 299.55493 * 1 2 3 32 32 H 1.08997 * 109.47017 * 59.56124 * 1 2 3 33 33 H 1.09003 * 110.49140 * 240.13088 * 4 2 1 34 34 H 1.08998 * 110.49039 * 2.78554 * 4 2 1 35 35 H 1.08997 * 110.83904 * 262.53994 * 5 4 2 36 36 H 1.09000 * 111.05039 * 138.88049 * 5 4 2 37 37 H 1.09004 * 109.47257 * 62.82277 * 8 6 5 38 38 H 1.08997 * 109.46940 * 302.82166 * 8 6 5 39 39 H 1.09004 * 109.46689 * 60.00066 * 9 8 6 40 40 H 1.08999 * 109.47029 * 300.00340 * 9 8 6 41 41 H 1.09004 * 113.78879 * 41.43876 * 13 12 10 42 42 H 1.09001 * 113.79403 * 269.96319 * 13 12 10 43 43 H 1.09004 * 113.79581 * 90.04416 * 15 12 10 44 44 H 1.09000 * 113.79412 * 318.56575 * 15 12 10 45 45 H 1.09001 * 109.48448 * 194.05018 * 16 14 13 46 46 H 1.08996 * 109.49267 * 314.09943 * 16 14 13 47 47 H 1.08997 * 109.49100 * 179.01970 * 17 16 14 48 48 H 1.09004 * 109.48434 * 299.08936 * 17 16 14 49 49 H 1.09004 * 109.52821 * 183.66172 * 18 17 16 50 50 H 1.08996 * 109.53217 * 63.43567 * 18 17 16 51 51 H 0.96998 * 120.00722 * 180.02562 * 23 22 20 52 52 H 1.09001 * 109.63511 * 188.92530 * 28 19 18 53 53 H 1.09000 * 109.63901 * 68.30452 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0540 -0.7497 1.2401 5 6 2.9239 -1.8920 0.6562 6 6 3.2381 -1.3630 -0.7664 7 1 4.0691 -0.6583 -0.7391 8 6 3.5476 -2.5221 -1.7159 9 6 3.9220 -1.9680 -3.0921 10 6 4.2275 -3.1096 -4.0271 11 8 4.1527 -4.2538 -3.6320 12 7 4.5838 -2.8592 -5.3026 13 6 4.9436 -3.7020 -6.4604 14 6 4.4952 -2.5164 -7.3254 15 6 4.7709 -1.6317 -6.1021 16 6 5.4199 -2.2353 -8.5068 17 6 5.2095 -3.3055 -9.5826 18 6 3.7460 -3.2889 -10.0347 19 7 2.8792 -3.4858 -8.8652 20 6 1.9584 -4.4990 -8.8403 21 1 2.1232 -5.3929 -9.4234 22 6 0.8130 -4.3771 -8.0656 23 7 0.4369 -3.1940 -7.6286 24 14 -0.1945 -5.8923 -7.6431 25 1 0.3026 -6.4789 -6.3727 26 1 -1.6211 -5.5106 -7.4875 27 1 -0.0658 -6.8922 -8.7336 28 6 3.0206 -2.5714 -7.7214 29 8 2.0188 -0.6964 -1.1585 30 1 -0.3633 -1.0276 -0.0080 31 1 -0.3634 0.5069 0.8939 32 1 -0.3633 0.5206 -0.8860 33 1 2.6619 -0.0882 1.8574 34 1 1.2246 -1.1572 1.8183 35 1 2.3600 -2.8235 0.6092 36 1 3.8391 -2.0216 1.2339 37 1 2.6692 -3.1608 -1.8082 38 1 4.3799 -3.1039 -1.3198 39 1 4.8004 -1.3293 -2.9999 40 1 3.0897 -1.3862 -3.4882 41 1 4.3181 -4.5880 -6.5706 42 1 6.0092 -3.9201 -6.5315 43 1 5.7852 -1.2341 -6.0667 44 1 4.0084 -0.8727 -5.9274 45 1 5.1920 -1.2533 -8.9213 46 1 6.4564 -2.2565 -8.1705 47 1 5.8564 -3.0968 -10.4346 48 1 5.4524 -4.2858 -9.1725 49 1 3.5773 -4.0917 -10.7526 50 1 3.5189 -2.3294 -10.4993 51 1 -0.3633 -3.1088 -7.0870 52 1 2.4295 -2.9396 -6.8829 53 1 2.6799 -1.5754 -8.0044 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982159537.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:26 Heat of formation + Delta-G solvation = -62.178632 kcal Electronic energy + Delta-G solvation = -30568.674526 eV Core-core repulsion = 26633.472051 eV Total energy + Delta-G solvation = -3935.202475 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.74415 -40.61095 -39.56019 -37.35523 -34.93002 -34.71636 -33.20708 -32.26523 -31.74430 -31.03773 -28.29200 -27.33842 -27.07720 -26.38822 -24.00901 -23.85185 -22.28076 -21.94383 -21.86062 -20.12335 -19.41389 -18.57401 -17.96735 -17.67513 -17.06264 -16.79439 -16.67374 -16.59809 -15.84351 -15.74625 -15.50155 -15.26987 -14.75538 -14.56529 -14.48384 -14.27842 -14.08825 -13.87035 -13.62627 -13.56291 -13.38366 -13.16779 -13.12664 -12.95328 -12.82078 -12.64697 -12.61402 -12.56727 -12.25757 -12.13004 -11.99839 -11.83042 -11.75830 -11.67048 -11.52591 -11.46904 -11.30830 -11.02764 -10.64402 -10.58345 -10.53245 -9.62343 -8.69441 -7.91826 -5.32928 1.35015 1.41152 1.45348 1.64862 1.90301 2.44615 2.85989 3.21838 3.37246 3.42545 3.67619 3.71714 3.84753 3.95514 4.01434 4.02891 4.10182 4.13286 4.29460 4.34073 4.35290 4.39466 4.44535 4.46815 4.51470 4.58822 4.63083 4.64706 4.67362 4.76996 4.82646 4.90314 4.91411 4.93115 4.96009 5.06312 5.09319 5.10337 5.14759 5.16606 5.19681 5.25485 5.29622 5.30366 5.36878 5.50440 5.57295 5.68370 5.75741 6.09749 6.35828 6.80658 7.12824 7.15428 7.87180 8.35320 9.13594 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011230 B = 0.003273 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.657025 B = 8553.785855 C = 9870.593071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 H 0.079 0.921 4 C -0.145 4.145 5 C -0.151 4.151 6 C 0.078 3.922 7 H 0.094 0.906 8 C -0.092 4.092 9 C -0.118 4.118 10 C 0.520 3.480 11 O -0.602 6.602 12 N -0.643 5.643 13 C 0.121 3.879 14 C -0.107 4.107 15 C 0.120 3.880 16 C -0.087 4.087 17 C -0.125 4.125 18 C 0.137 3.863 19 N -0.609 5.609 20 C -0.253 4.253 21 H 0.064 0.936 22 C -0.046 4.046 23 N -0.929 5.929 24 Si 0.948 3.052 25 H -0.302 1.302 26 H -0.291 1.291 27 H -0.262 1.262 28 C 0.209 3.791 29 O -0.401 6.401 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.042 0.958 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.088 0.912 41 H 0.035 0.965 42 H 0.105 0.895 43 H 0.130 0.870 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.049 0.951 49 H 0.047 0.953 50 H 0.019 0.981 51 H 0.246 0.754 52 H 0.044 0.956 53 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.378 11.109 13.536 21.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.004 3.996 3 H 0.097 0.903 4 C -0.183 4.183 5 C -0.188 4.188 6 C 0.021 3.979 7 H 0.112 0.888 8 C -0.130 4.130 9 C -0.158 4.158 10 C 0.312 3.688 11 O -0.484 6.484 12 N -0.377 5.377 13 C -0.001 4.001 14 C -0.109 4.109 15 C -0.002 4.002 16 C -0.125 4.125 17 C -0.164 4.164 18 C 0.012 3.988 19 N -0.332 5.332 20 C -0.384 4.384 21 H 0.082 0.918 22 C -0.242 4.242 23 N -0.575 5.575 24 Si 0.777 3.223 25 H -0.230 1.230 26 H -0.218 1.218 27 H -0.186 1.186 28 C 0.083 3.917 29 O -0.321 6.321 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.061 0.939 38 H 0.106 0.894 39 H 0.143 0.857 40 H 0.107 0.893 41 H 0.053 0.947 42 H 0.123 0.877 43 H 0.147 0.853 44 H 0.100 0.900 45 H 0.092 0.908 46 H 0.110 0.890 47 H 0.107 0.893 48 H 0.068 0.932 49 H 0.065 0.935 50 H 0.037 0.963 51 H 0.055 0.945 52 H 0.062 0.938 53 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 12.016 10.501 13.781 21.085 hybrid contribution -1.429 -1.220 0.229 1.893 sum 10.587 9.281 14.010 19.862 Atomic orbital electron populations 1.21970 0.93982 1.02130 1.02900 1.22935 0.95288 0.96272 0.85092 0.90300 1.23038 1.00434 0.97369 0.97428 1.23202 1.01441 0.98822 0.95358 1.23249 0.88148 0.93190 0.93307 0.88845 1.21324 1.01706 0.96752 0.93217 1.21537 1.04480 0.95784 0.93986 1.21127 0.75495 0.90891 0.81263 1.90636 1.55870 1.25474 1.76469 1.50156 1.66485 1.12159 1.08876 1.23118 0.99953 0.95411 0.81655 1.22685 0.98292 0.94938 0.94998 1.23501 1.03481 0.88083 0.85159 1.21313 0.98423 0.99149 0.93608 1.21918 0.96252 0.98979 0.99233 1.21114 0.90859 0.98028 0.88830 1.44295 1.40509 1.34383 1.14035 1.19435 0.97824 0.95176 1.25927 0.91817 1.25573 0.97763 0.98126 1.02690 1.70126 1.25174 1.22285 1.39944 0.85546 0.77950 0.80773 0.78016 1.23014 1.21773 1.18605 1.20180 0.90295 0.91089 0.90098 1.88945 1.40544 1.68018 1.34611 0.93334 0.89001 0.93025 0.88489 0.89893 0.91892 0.87976 0.93930 0.89419 0.85716 0.89328 0.94671 0.87737 0.85252 0.89961 0.90837 0.88972 0.89350 0.93199 0.93463 0.96277 0.94516 0.93779 0.98080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.36 71.98 0.67 -2.18 16 2 C 0.06 1.17 4.06 30.97 0.13 1.29 16 3 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 4 C -0.15 -2.08 6.65 31.65 0.21 -1.87 16 5 C -0.15 -2.59 6.60 31.96 0.21 -2.38 16 6 C 0.08 1.66 3.30 31.28 0.10 1.77 16 7 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 8 C -0.09 -2.52 4.27 30.60 0.13 -2.39 16 9 C -0.12 -3.36 5.38 29.85 0.16 -3.20 16 10 C 0.52 19.83 8.06 87.66 0.71 20.53 16 11 O -0.60 -28.37 16.71 -3.05 -0.05 -28.42 16 12 N -0.64 -22.67 3.47 -843.18 -2.92 -25.59 16 13 C 0.12 4.40 7.63 86.31 0.66 5.06 16 14 C -0.11 -3.60 0.87 -52.03 -0.05 -3.64 16 15 C 0.12 3.21 7.75 86.30 0.67 3.88 16 16 C -0.09 -2.25 5.07 30.54 0.15 -2.09 16 17 C -0.12 -3.66 6.02 30.72 0.18 -3.48 16 18 C 0.14 5.42 6.46 86.37 0.56 5.98 16 19 N -0.61 -30.50 3.01 -699.47 -2.10 -32.60 16 20 C -0.25 -14.40 9.60 84.03 0.81 -13.59 16 21 H 0.06 3.57 7.88 -2.91 -0.02 3.54 16 22 C -0.05 -2.71 4.92 84.86 0.42 -2.29 16 23 N -0.93 -57.43 11.16 21.65 0.24 -57.19 16 24 Si 0.95 48.63 29.59 68.60 2.03 50.66 16 25 H -0.30 -16.15 7.11 99.48 0.71 -15.44 16 26 H -0.29 -14.83 7.11 99.48 0.71 -14.13 16 27 H -0.26 -12.55 7.11 99.48 0.71 -11.85 16 28 C 0.21 9.90 4.35 86.19 0.37 10.28 16 29 O -0.40 -10.61 10.65 -148.98 -1.59 -12.20 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 1.11 7.70 -2.39 -0.02 1.09 16 35 H 0.06 1.28 8.06 -2.39 -0.02 1.26 16 36 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.04 1.46 8.10 -2.38 -0.02 1.44 16 38 H 0.09 2.25 8.10 -2.39 -0.02 2.23 16 39 H 0.12 2.52 8.14 -2.38 -0.02 2.50 16 40 H 0.09 2.74 7.99 -2.39 -0.02 2.72 16 41 H 0.03 1.63 8.09 -2.38 -0.02 1.61 16 42 H 0.10 3.06 8.07 -2.39 -0.02 3.04 16 43 H 0.13 2.27 8.09 -2.38 -0.02 2.25 16 44 H 0.08 2.22 8.09 -2.39 -0.02 2.20 16 45 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.09 1.73 8.12 -2.39 -0.02 1.71 16 47 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 48 H 0.05 1.56 7.94 -2.39 -0.02 1.55 16 49 H 0.05 1.88 7.93 -2.38 -0.02 1.86 16 50 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 52 H 0.04 2.52 5.97 -2.39 -0.01 2.50 16 53 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 Total: -1.00 -79.20 412.37 2.56 -76.64 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.85 Total: 17.02 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 6.10 Total: 11.68 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -4.78 Total: -115.38 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -1.64 Total: -40.62 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 2.03 Total: 50.66 kcal Total: -79.20 2.56 -76.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982159537.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.459 kcal (2) G-P(sol) polarization free energy of solvation -79.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds