Wall clock time and date at job start Tue Mar 31 2020 20:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.33608 * 2 1 4 4 C 1.54485 * 110.46586 * 237.68476 * 2 1 3 5 5 C 1.54510 * 104.06477 * 217.14116 * 4 2 1 6 6 C 1.54486 * 104.06096 * 359.97438 * 5 4 2 7 7 H 1.08999 * 110.37360 * 265.14612 * 6 5 4 8 8 C 1.53005 * 110.36977 * 142.80644 * 6 5 4 9 9 C 1.53001 * 109.46764 * 174.99835 * 8 6 5 10 10 C 1.50705 * 109.46710 * 180.02562 * 9 8 6 11 11 O 1.21277 * 120.00377 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99837 * 180.02562 * 10 9 8 13 13 C 1.47183 * 135.99449 * 359.62740 * 12 10 9 14 14 C 1.53187 * 87.73003 * 153.42525 * 13 12 10 15 15 C 1.47172 * 135.99619 * 180.02562 * 12 10 9 16 16 C 1.52513 * 114.08519 * 139.66704 * 14 13 12 17 17 C 1.53209 * 109.35703 * 190.14618 * 16 14 13 18 18 C 1.53137 * 109.35538 * 301.09726 * 17 16 14 19 19 N 1.46906 * 109.10611 * 56.51234 * 18 17 16 20 20 C 1.36940 * 120.69617 * 124.61886 * 19 18 17 21 21 H 1.08006 * 120.00097 * 332.79741 * 20 19 18 22 22 C 1.38807 * 119.99897 * 152.80228 * 20 19 18 23 23 N 1.31623 * 120.00115 * 343.32103 * 22 20 19 24 24 Si 1.86801 * 120.00133 * 163.32128 * 22 20 19 25 25 H 1.48505 * 109.46958 * 59.99942 * 24 22 20 26 26 H 1.48499 * 109.47556 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47206 * 300.00110 * 24 22 20 28 28 C 1.47138 * 118.60475 * 304.59891 * 19 18 17 29 29 O 1.44425 * 110.37497 * 122.25142 * 2 1 3 30 30 H 1.09005 * 109.46527 * 299.20252 * 1 2 3 31 31 H 1.08995 * 109.47480 * 59.20312 * 1 2 3 32 32 H 1.09000 * 109.47008 * 179.20767 * 1 2 3 33 33 H 1.08998 * 110.51198 * 98.49631 * 4 2 1 34 34 H 1.09001 * 110.50943 * 335.78670 * 4 2 1 35 35 H 1.08996 * 110.51140 * 241.36001 * 5 4 2 36 36 H 1.08991 * 110.50999 * 118.63945 * 5 4 2 37 37 H 1.08995 * 109.47381 * 295.00413 * 8 6 5 38 38 H 1.09004 * 109.46554 * 55.00197 * 8 6 5 39 39 H 1.08995 * 109.47644 * 300.00417 * 9 8 6 40 40 H 1.09000 * 109.46848 * 60.00631 * 9 8 6 41 41 H 1.09000 * 113.49182 * 268.11437 * 13 12 10 42 42 H 1.09001 * 113.48804 * 38.63059 * 13 12 10 43 43 H 1.08999 * 113.48501 * 321.36792 * 15 12 10 44 44 H 1.08993 * 113.49046 * 91.81335 * 15 12 10 45 45 H 1.09004 * 109.48715 * 310.10967 * 16 14 13 46 46 H 1.08997 * 109.49875 * 70.17985 * 16 14 13 47 47 H 1.08999 * 109.48995 * 181.13337 * 17 16 14 48 48 H 1.09000 * 109.51025 * 61.07744 * 17 16 14 49 49 H 1.08998 * 109.53391 * 296.62689 * 18 17 16 50 50 H 1.08996 * 109.53602 * 176.40072 * 18 17 16 51 51 H 0.96996 * 120.00122 * 180.02562 * 23 22 20 52 52 H 1.08997 * 109.63836 * 291.54227 * 28 19 18 53 53 H 1.08995 * 109.63744 * 170.92120 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0701 -0.7737 -1.2232 5 6 3.3208 -1.5032 -0.6837 6 6 3.3887 -1.0834 0.8015 7 1 4.0525 -0.2277 0.9240 8 6 3.8624 -2.2545 1.6648 9 6 4.0417 -1.7832 3.1094 10 6 4.5089 -2.9365 3.9596 11 8 4.6818 -4.0277 3.4593 12 7 4.7345 -2.7553 5.2759 13 6 4.6508 -1.6284 6.2190 14 6 4.4125 -2.6555 7.3303 15 6 5.1793 -3.5957 6.3992 16 6 5.1372 -2.3404 8.6348 17 6 5.0356 -3.5451 9.5759 18 6 3.5605 -3.8566 9.8442 19 7 2.8762 -4.0827 8.5640 20 6 2.1860 -5.2432 8.3356 21 1 2.4700 -6.1503 8.8486 22 6 1.1215 -5.2537 7.4448 23 7 0.5639 -4.1212 7.0722 24 14 0.4803 -6.8753 6.7748 25 1 0.0155 -7.7264 7.8994 26 1 -0.6523 -6.6157 5.8501 27 1 1.5677 -7.5730 6.0427 28 6 2.9477 -3.0358 7.5325 29 8 2.0328 -0.7225 1.1450 30 1 -0.3632 0.5014 0.8971 31 1 -0.3634 0.5261 -0.8827 32 1 -0.3633 -1.0276 -0.0142 33 1 2.3450 -0.0835 -2.0208 34 1 1.3313 -1.4929 -1.5769 35 1 4.2139 -1.1736 -1.2145 36 1 3.2002 -2.5830 -0.7706 37 1 3.1212 -3.0530 1.6324 38 1 4.8134 -2.6258 1.2830 39 1 4.7829 -0.9848 3.1418 40 1 3.0906 -1.4119 3.4911 41 1 5.5874 -1.0814 6.3266 42 1 3.7976 -0.9742 6.0396 43 1 4.7735 -4.6070 6.3724 44 1 6.2580 -3.5781 6.5544 45 1 6.1861 -2.1292 8.4263 46 1 4.6776 -1.4714 9.1056 47 1 5.5356 -3.3148 10.5167 48 1 5.5116 -4.4097 9.1133 49 1 3.0984 -3.0153 10.3607 50 1 3.4833 -4.7516 10.4616 51 1 -0.1802 -4.1286 6.4500 52 1 2.3839 -2.1617 7.8581 53 1 2.5352 -3.4143 6.5973 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982159539.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:30 Heat of formation + Delta-G solvation = -58.544268 kcal Electronic energy + Delta-G solvation = -30581.801627 eV Core-core repulsion = 26646.756750 eV Total energy + Delta-G solvation = -3935.044877 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.85773 -40.61303 -39.58342 -37.42885 -34.93053 -34.72884 -33.17284 -32.29838 -31.76710 -31.07433 -28.34822 -27.34000 -26.94853 -26.43324 -24.00233 -23.77759 -22.38028 -22.09993 -21.72234 -20.18663 -19.41398 -18.55620 -17.98466 -17.53663 -17.16799 -16.82127 -16.71357 -16.51805 -15.87954 -15.75975 -15.52533 -15.27418 -14.75920 -14.65964 -14.54064 -14.24811 -14.13486 -13.92525 -13.63303 -13.50752 -13.36311 -13.14387 -13.09018 -12.96101 -12.74829 -12.63695 -12.58791 -12.53195 -12.31520 -12.13046 -12.02040 -11.84081 -11.72406 -11.68143 -11.51249 -11.46986 -11.30782 -10.97091 -10.67485 -10.66803 -10.54259 -9.64642 -8.68755 -7.92048 -5.33399 1.34835 1.41145 1.44179 1.63101 1.90931 2.44444 2.88862 3.20818 3.36470 3.41341 3.67596 3.72559 3.84090 3.93202 4.00697 4.02750 4.09947 4.14431 4.27213 4.33412 4.35299 4.39845 4.45922 4.46859 4.52541 4.57994 4.63352 4.63774 4.64729 4.77705 4.82320 4.89900 4.91498 4.93197 4.94813 5.05473 5.08724 5.09888 5.13238 5.18704 5.19650 5.23332 5.28248 5.30424 5.37252 5.50300 5.56677 5.68624 5.75849 6.03620 6.35758 6.83030 7.12643 7.13914 7.87160 8.35384 9.13309 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011091 B = 0.003307 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.961369 B = 8465.056654 C = 9756.089616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.060 3.940 3 H 0.083 0.917 4 C -0.147 4.147 5 C -0.151 4.151 6 C 0.077 3.923 7 H 0.093 0.907 8 C -0.092 4.092 9 C -0.117 4.117 10 C 0.527 3.473 11 O -0.601 6.601 12 N -0.647 5.647 13 C 0.118 3.882 14 C -0.109 4.109 15 C 0.117 3.883 16 C -0.084 4.084 17 C -0.125 4.125 18 C 0.136 3.864 19 N -0.609 5.609 20 C -0.256 4.256 21 H 0.063 0.937 22 C -0.045 4.045 23 N -0.929 5.929 24 Si 0.948 3.052 25 H -0.266 1.266 26 H -0.296 1.296 27 H -0.292 1.292 28 C 0.211 3.789 29 O -0.399 6.399 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.042 0.958 38 H 0.087 0.913 39 H 0.126 0.874 40 H 0.088 0.912 41 H 0.130 0.870 42 H 0.079 0.921 43 H 0.030 0.970 44 H 0.106 0.894 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.089 0.911 48 H 0.049 0.951 49 H 0.019 0.981 50 H 0.047 0.953 51 H 0.246 0.754 52 H 0.001 0.999 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.719 14.850 -10.914 21.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.003 3.997 3 H 0.101 0.899 4 C -0.184 4.184 5 C -0.189 4.189 6 C 0.019 3.981 7 H 0.111 0.889 8 C -0.130 4.130 9 C -0.157 4.157 10 C 0.319 3.681 11 O -0.483 6.483 12 N -0.380 5.380 13 C -0.004 4.004 14 C -0.111 4.111 15 C -0.006 4.006 16 C -0.122 4.122 17 C -0.164 4.164 18 C 0.011 3.989 19 N -0.332 5.332 20 C -0.386 4.386 21 H 0.081 0.919 22 C -0.241 4.241 23 N -0.575 5.575 24 Si 0.777 3.223 25 H -0.191 1.191 26 H -0.222 1.222 27 H -0.219 1.219 28 C 0.085 3.915 29 O -0.320 6.320 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.106 0.894 39 H 0.144 0.856 40 H 0.107 0.893 41 H 0.147 0.853 42 H 0.098 0.902 43 H 0.049 0.951 44 H 0.124 0.876 45 H 0.112 0.888 46 H 0.093 0.907 47 H 0.107 0.893 48 H 0.067 0.933 49 H 0.037 0.963 50 H 0.065 0.935 51 H 0.055 0.945 52 H 0.019 0.981 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.489 14.207 -11.283 20.957 hybrid contribution -1.071 -1.495 -0.474 1.899 sum 9.418 12.712 -11.758 19.711 Atomic orbital electron populations 1.21840 0.93254 1.02288 1.03135 1.23203 0.95583 0.96009 0.84912 0.89866 1.23006 0.97208 0.99913 0.98292 1.23002 0.99826 1.01221 0.94850 1.23106 0.84472 0.96595 0.93877 0.88898 1.21358 1.01772 0.96950 0.92960 1.21540 1.03679 0.95982 0.94482 1.21009 0.76226 0.90407 0.80410 1.90637 1.55740 1.29255 1.72695 1.49760 1.65741 1.16299 1.06222 1.23323 1.03602 0.90048 0.83422 1.22461 0.97659 0.95855 0.95158 1.22965 0.99459 0.95497 0.82661 1.21245 1.00332 0.98043 0.92591 1.21911 0.96194 0.98180 1.00080 1.21110 0.92622 0.98136 0.86984 1.44282 1.59377 1.17656 1.11905 1.19392 1.07631 0.88249 1.23333 0.91894 1.25587 0.96927 0.98902 1.02681 1.70122 1.24585 1.26038 1.36754 0.85619 0.77146 0.81085 0.78417 1.19116 1.22185 1.21880 1.20097 0.89732 0.89235 0.92390 1.89209 1.27909 1.75149 1.39721 0.92630 0.88798 0.93329 0.88142 0.91126 0.88121 0.91789 0.93941 0.89446 0.85637 0.89331 0.85268 0.90235 0.95120 0.87571 0.88828 0.90745 0.89292 0.93255 0.96254 0.93484 0.94509 0.98096 0.93830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.53 71.98 0.69 -2.01 16 2 C 0.06 1.14 3.92 31.10 0.12 1.26 16 3 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 4 C -0.15 -2.27 6.63 31.61 0.21 -2.06 16 5 C -0.15 -2.64 6.63 31.61 0.21 -2.43 16 6 C 0.08 1.65 3.25 31.10 0.10 1.75 16 7 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 8 C -0.09 -2.56 4.13 30.60 0.13 -2.43 16 9 C -0.12 -3.36 5.46 29.85 0.16 -3.19 16 10 C 0.53 20.26 8.08 87.66 0.71 20.96 16 11 O -0.60 -28.52 16.76 -3.02 -0.05 -28.57 16 12 N -0.65 -22.95 3.48 -857.36 -2.99 -25.93 16 13 C 0.12 3.18 7.60 83.43 0.63 3.81 16 14 C -0.11 -3.68 0.96 -52.41 -0.05 -3.73 16 15 C 0.12 4.23 7.53 83.34 0.63 4.86 16 16 C -0.08 -2.17 5.11 30.50 0.16 -2.01 16 17 C -0.12 -3.67 6.03 30.71 0.19 -3.48 16 18 C 0.14 5.44 6.45 86.35 0.56 5.99 16 19 N -0.61 -30.70 3.01 -699.70 -2.10 -32.80 16 20 C -0.26 -14.64 9.60 84.03 0.81 -13.83 16 21 H 0.06 3.54 7.88 -2.91 -0.02 3.52 16 22 C -0.05 -2.69 4.93 84.86 0.42 -2.27 16 23 N -0.93 -57.68 11.16 21.65 0.24 -57.44 16 24 Si 0.95 48.85 29.59 68.60 2.03 50.88 16 25 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 27 H -0.29 -15.29 7.11 99.48 0.71 -14.58 16 28 C 0.21 10.06 4.43 86.15 0.38 10.45 16 29 O -0.40 -10.70 10.82 -148.98 -1.61 -12.31 16 30 H 0.05 1.09 8.14 -2.38 -0.02 1.08 16 31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.16 7.87 -2.39 -0.02 1.14 16 35 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.29 7.87 -2.39 -0.02 1.27 16 37 H 0.04 1.48 8.10 -2.39 -0.02 1.46 16 38 H 0.09 2.27 8.10 -2.38 -0.02 2.25 16 39 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.09 2.77 8.01 -2.39 -0.02 2.75 16 41 H 0.13 2.27 8.10 -2.39 -0.02 2.25 16 42 H 0.08 2.14 8.12 -2.39 -0.02 2.12 16 43 H 0.03 1.42 8.11 -2.39 -0.02 1.40 16 44 H 0.11 3.06 8.06 -2.39 -0.02 3.04 16 45 H 0.09 1.73 8.10 -2.39 -0.02 1.71 16 46 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.05 1.56 8.02 -2.39 -0.02 1.54 16 49 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 51 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 52 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 53 H 0.04 2.50 5.93 -2.39 -0.01 2.48 16 Total: -1.00 -79.89 412.60 2.41 -77.48 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.85 Total: 17.05 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 6.04 Total: 11.64 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -4.85 Total: -116.17 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -1.66 Total: -40.88 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 2.03 Total: 50.88 kcal Total: -79.89 2.41 -77.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982159539.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.934 kcal (2) G-P(sol) polarization free energy of solvation -79.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds