Wall clock time and date at job start Tue Mar 31 2020 21:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.48897 * 2 1 4 4 O 1.42906 * 109.48360 * 239.96806 * 2 1 3 5 5 C 1.42897 * 114.09654 * 178.85889 * 4 2 1 6 6 C 1.53099 * 109.42006 * 61.15926 * 5 4 2 7 7 C 1.53180 * 109.15923 * 302.39085 * 6 5 4 8 8 C 1.53093 * 109.48083 * 120.02268 * 2 1 3 9 9 H 1.09007 * 109.57364 * 57.65724 * 8 2 1 10 10 C 1.50702 * 109.52665 * 297.50280 * 8 2 1 11 11 O 1.21285 * 119.99379 * 0.31054 * 10 8 2 12 12 N 1.34776 * 120.00125 * 180.31198 * 10 8 2 13 13 C 1.48106 * 127.84259 * 179.97438 * 12 10 8 14 14 C 1.54319 * 104.71334 * 140.22115 * 13 12 10 15 15 C 1.52996 * 112.91712 * 146.34947 * 14 13 12 16 16 C 1.53757 * 109.08007 * 271.65123 * 14 13 12 17 17 N 1.47202 * 106.45330 * 130.81021 * 16 14 13 18 18 C 1.36932 * 126.70268 * 148.61296 * 17 16 14 19 19 H 1.08004 * 120.00371 * 359.97438 * 18 17 16 20 20 C 1.38817 * 120.00205 * 179.97438 * 18 17 16 21 21 N 1.31614 * 119.99806 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00022 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47346 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47225 * 119.99911 * 22 20 18 25 25 H 1.48495 * 109.47448 * 239.99897 * 22 20 18 26 26 C 1.47200 * 106.59476 * 328.64628 * 17 16 14 27 27 C 1.53756 * 106.40846 * 31.32899 * 26 17 16 28 28 C 1.53001 * 112.06681 * 103.41694 * 27 26 17 29 29 C 1.48263 * 127.77357 * 359.87905 * 12 10 8 30 30 H 1.08998 * 109.47559 * 299.97455 * 1 2 3 31 31 H 1.09006 * 109.46826 * 59.97541 * 1 2 3 32 32 H 1.09003 * 109.46847 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.48749 * 301.17813 * 5 4 2 34 34 H 1.08997 * 109.48306 * 181.13935 * 5 4 2 35 35 H 1.08995 * 109.52599 * 182.48078 * 6 5 4 36 36 H 1.08995 * 109.51755 * 62.28881 * 6 5 4 37 37 H 1.08998 * 109.54286 * 297.10819 * 7 6 5 38 38 H 1.09002 * 109.61138 * 176.88307 * 7 6 5 39 39 H 1.09004 * 110.39205 * 21.41672 * 13 12 10 40 40 H 1.08993 * 110.49285 * 259.07956 * 13 12 10 41 41 H 1.09008 * 109.47042 * 182.65622 * 15 14 13 42 42 H 1.09003 * 109.47472 * 302.64909 * 15 14 13 43 43 H 1.08997 * 109.47235 * 62.65937 * 15 14 13 44 44 H 1.09002 * 110.07039 * 11.54439 * 16 14 13 45 45 H 1.08997 * 110.06579 * 250.07461 * 16 14 13 46 46 H 0.97004 * 119.99987 * 179.97438 * 21 20 18 47 47 H 1.09005 * 110.06910 * 150.57003 * 26 17 16 48 48 H 1.09001 * 110.06769 * 272.09244 * 26 17 16 49 49 H 1.08996 * 109.47408 * 61.00714 * 28 27 26 50 50 H 1.08993 * 109.47139 * 181.01781 * 28 27 26 51 51 H 1.09007 * 109.47061 * 301.01716 * 28 27 26 52 52 H 1.09004 * 110.31221 * 101.02592 * 29 12 10 53 53 H 1.09000 * 110.47845 * 338.62904 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 8 2.0066 -0.6743 -1.1664 5 6 3.4307 -0.7093 -1.2789 6 6 4.0177 -1.4600 -0.0807 7 6 3.5711 -0.7707 1.2123 8 6 2.0405 -0.7221 1.2496 9 1 1.6443 -1.7374 1.2722 10 6 1.5901 0.0216 2.4805 11 8 0.9212 1.0273 2.3704 12 7 1.9307 -0.4308 3.7036 13 6 1.5865 0.1577 5.0184 14 6 1.2733 -1.0545 5.9205 15 6 1.6835 -0.8344 7.3779 16 6 -0.2170 -1.4085 5.7870 17 7 -0.2807 -2.8585 5.5412 18 6 -1.2794 -3.7113 5.9291 19 1 -2.1311 -3.3328 6.4749 20 6 -1.1971 -5.0623 5.6211 21 7 -0.1595 -5.5235 4.9556 22 14 -2.5591 -6.2257 6.1510 23 1 -3.6056 -5.4639 6.8790 24 1 -3.1576 -6.8660 4.9521 25 1 -1.9975 -7.2720 7.0425 26 6 0.9392 -3.2128 4.7976 27 6 2.0333 -2.2410 5.2696 28 6 3.0104 -2.9041 6.2424 29 6 2.7336 -1.6319 4.0365 30 1 -0.3634 0.5134 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 -0.3633 -1.0277 -0.0005 33 1 3.8193 0.3089 -1.2957 34 1 3.7101 -1.2204 -2.2003 35 1 5.1059 -1.4498 -0.1419 36 1 3.6613 -2.4901 -0.0862 37 1 3.9689 0.2436 1.2409 38 1 3.9392 -1.3312 2.0717 39 1 0.7110 0.8009 4.9291 40 1 2.4306 0.7200 5.4175 41 1 1.4813 -1.7383 7.9527 42 1 2.7480 -0.6045 7.4250 43 1 1.1135 -0.0039 7.7943 44 1 -0.6565 -0.8674 4.9490 45 1 -0.7440 -1.1619 6.7086 46 1 -0.1018 -6.4677 4.7407 47 1 1.2289 -4.2395 5.0215 48 1 0.7718 -3.0960 3.7268 49 1 3.5078 -3.7375 5.7463 50 1 3.7547 -2.1753 6.5630 51 1 2.4646 -3.2722 7.1112 52 1 3.7565 -1.3470 4.2827 53 1 2.7245 -2.3387 3.2068 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982265595.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:32 Heat of formation + Delta-G solvation = -72.797363 kcal Electronic energy + Delta-G solvation = -32387.607645 eV Core-core repulsion = 28451.944708 eV Total energy + Delta-G solvation = -3935.662938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.08946 -40.83601 -39.22290 -36.63703 -35.10008 -34.25290 -33.63178 -33.04347 -32.46661 -29.43402 -28.36960 -27.45959 -26.93749 -26.48009 -25.61690 -23.97423 -23.31333 -21.76786 -21.50409 -20.39008 -19.31789 -18.81479 -18.20752 -17.20369 -16.96943 -16.80940 -16.63306 -16.21970 -15.81151 -15.73005 -15.55223 -15.26981 -15.03193 -14.65123 -14.43100 -14.35676 -13.92316 -13.61631 -13.55039 -13.43618 -13.29559 -13.27818 -13.14217 -12.96328 -12.88501 -12.74941 -12.53181 -12.46840 -12.37115 -12.10620 -12.00769 -12.00161 -11.93336 -11.79460 -11.41591 -11.36055 -11.15936 -11.00070 -10.81646 -10.75432 -10.42681 -9.70402 -8.91124 -7.75953 -5.23355 1.44299 1.45353 1.51556 1.54989 1.90673 2.47041 2.78730 3.28836 3.34858 3.48387 3.52516 3.66004 3.68808 3.88844 3.91117 3.94972 4.09563 4.12266 4.16198 4.33146 4.34732 4.39232 4.41779 4.51431 4.56287 4.59044 4.70516 4.73667 4.75396 4.77613 4.83072 4.84650 4.87843 4.88848 4.95429 5.00963 5.03630 5.07676 5.11670 5.23718 5.26470 5.26586 5.29369 5.35329 5.42021 5.47499 5.57942 5.69581 5.87078 6.22836 6.38677 6.53536 7.07126 7.11097 7.76848 8.44693 9.22222 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011958 B = 0.004119 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.895595 B = 6796.477156 C = 7638.009081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.117 3.883 3 H 0.065 0.935 4 O -0.395 6.395 5 C 0.049 3.951 6 C -0.149 4.149 7 C -0.113 4.113 8 C -0.130 4.130 9 H 0.087 0.913 10 C 0.540 3.460 11 O -0.577 6.577 12 N -0.614 5.614 13 C 0.122 3.878 14 C -0.075 4.075 15 C -0.114 4.114 16 C 0.141 3.859 17 N -0.615 5.615 18 C -0.236 4.236 19 H 0.074 0.926 20 C -0.060 4.060 21 N -0.942 5.942 22 Si 0.975 3.025 23 H -0.272 1.272 24 H -0.295 1.295 25 H -0.286 1.286 26 C 0.157 3.843 27 C -0.086 4.086 28 C -0.110 4.110 29 C 0.118 3.882 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.103 0.897 41 H 0.048 0.952 42 H 0.087 0.913 43 H 0.062 0.938 44 H -0.009 1.009 45 H 0.040 0.960 46 H 0.248 0.752 47 H 0.096 0.904 48 H -0.033 1.033 49 H 0.055 0.945 50 H 0.087 0.913 51 H 0.042 0.958 52 H 0.110 0.890 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.891 10.409 -4.527 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.059 3.941 3 H 0.083 0.917 4 O -0.315 6.315 5 C -0.027 4.027 6 C -0.187 4.187 7 C -0.150 4.150 8 C -0.152 4.152 9 H 0.105 0.895 10 C 0.330 3.670 11 O -0.458 6.458 12 N -0.345 5.345 13 C -0.001 4.001 14 C -0.077 4.077 15 C -0.172 4.172 16 C 0.015 3.985 17 N -0.338 5.338 18 C -0.364 4.364 19 H 0.092 0.908 20 C -0.252 4.252 21 N -0.592 5.592 22 Si 0.804 3.196 23 H -0.196 1.196 24 H -0.223 1.223 25 H -0.213 1.213 26 C 0.031 3.969 27 C -0.088 4.088 28 C -0.167 4.167 29 C -0.005 4.005 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.121 0.879 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.081 0.919 44 H 0.009 0.991 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.114 0.886 48 H -0.015 1.015 49 H 0.074 0.926 50 H 0.105 0.895 51 H 0.061 0.939 52 H 0.128 0.872 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.286 10.675 -4.829 18.476 hybrid contribution -1.482 -0.909 0.180 1.748 sum 12.804 9.766 -4.649 16.761 Atomic orbital electron populations 1.21905 0.93683 1.01916 1.03318 1.21627 0.94867 0.94415 0.83160 0.91679 1.87946 1.23128 1.78239 1.42176 1.22881 0.79585 1.00692 0.99534 1.22193 1.02892 0.99942 0.93650 1.21738 0.90304 1.02641 1.00354 1.21917 1.00154 1.00414 0.92696 0.89530 1.20316 0.78582 0.84304 0.83771 1.90610 1.40821 1.27864 1.86475 1.48930 1.52638 1.27894 1.05060 1.22384 1.01336 0.94869 0.81506 1.22288 0.94419 0.94116 0.96889 1.21590 1.02424 1.01464 0.91695 1.21535 0.95419 0.85067 0.96472 1.44749 1.21799 1.02779 1.64482 1.19431 0.98823 0.89170 1.29023 0.90775 1.25489 1.00557 0.98135 1.01068 1.69853 1.30526 1.13122 1.45698 0.85052 0.78594 0.78852 0.77090 1.19619 1.22250 1.21253 1.21781 0.84572 1.00296 0.90236 1.22482 0.96040 0.95007 0.95314 1.21523 0.97403 1.00213 0.97552 1.22683 0.95087 0.85875 0.96810 0.90821 0.90955 0.93548 0.91995 0.86941 0.87463 0.91511 0.90534 0.89307 0.92038 0.87897 0.93279 0.89467 0.91875 0.99088 0.94121 0.94216 0.88624 1.01534 0.92610 0.89463 0.93887 0.87207 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 9.28 71.98 0.67 -4.06 16 2 C 0.12 3.33 2.40 30.62 0.07 3.40 16 3 H 0.07 1.81 8.04 -2.38 -0.02 1.79 16 4 O -0.40 -10.48 10.41 -148.98 -1.55 -12.03 16 5 C 0.05 0.88 6.84 72.02 0.49 1.37 16 6 C -0.15 -2.45 6.14 30.69 0.19 -2.26 16 7 C -0.11 -2.24 5.03 30.72 0.15 -2.08 16 8 C -0.13 -3.66 1.56 -11.45 -0.02 -3.68 16 9 H 0.09 2.80 7.96 -2.38 -0.02 2.78 16 10 C 0.54 17.82 6.99 87.66 0.61 18.43 16 11 O -0.58 -22.21 14.08 -3.04 -0.04 -22.25 16 12 N -0.61 -18.63 3.31 -807.98 -2.67 -21.30 16 13 C 0.12 3.49 5.93 86.52 0.51 4.01 16 14 C -0.08 -2.39 1.08 -50.72 -0.05 -2.44 16 15 C -0.11 -2.87 7.53 71.98 0.54 -2.33 16 16 C 0.14 6.07 6.37 86.50 0.55 6.62 16 17 N -0.61 -31.80 3.39 -695.48 -2.36 -34.16 16 18 C -0.24 -13.34 10.34 84.04 0.87 -12.47 16 19 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 20 C -0.06 -3.37 5.49 84.86 0.47 -2.91 16 21 N -0.94 -54.91 10.08 21.65 0.22 -54.70 16 22 Si 0.98 45.82 29.55 68.60 2.03 47.85 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 26 C 0.16 7.41 5.36 86.50 0.46 7.87 16 27 C -0.09 -2.85 1.08 -50.71 -0.05 -2.90 16 28 C -0.11 -3.04 7.54 71.98 0.54 -2.50 16 29 C 0.12 3.16 4.17 86.49 0.36 3.52 16 30 H 0.07 2.61 5.73 -2.39 -0.01 2.60 16 31 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.09 1.60 5.44 -2.39 -0.01 1.59 16 39 H 0.06 2.01 7.39 -2.38 -0.02 1.99 16 40 H 0.10 2.24 7.99 -2.39 -0.02 2.22 16 41 H 0.05 1.44 7.06 -2.38 -0.02 1.42 16 42 H 0.09 1.62 7.20 -2.39 -0.02 1.60 16 43 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 44 H -0.01 -0.41 7.45 -2.39 -0.02 -0.43 16 45 H 0.04 1.71 7.83 -2.39 -0.02 1.69 16 46 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 47 H 0.10 5.13 5.13 -2.38 -0.01 5.12 16 48 H -0.03 -1.76 7.46 -2.39 -0.02 -1.78 16 49 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.09 1.71 7.20 -2.39 -0.02 1.69 16 51 H 0.04 1.40 7.06 -2.38 -0.02 1.38 16 52 H 0.11 2.07 7.91 -2.38 -0.02 2.05 16 53 H 0.08 2.14 6.03 -2.39 -0.01 2.12 16 Total: -1.00 -71.36 387.56 2.88 -68.49 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.88 Total: 20.53 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 6.37 Total: 7.58 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -4.81 Total: -110.16 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -1.59 Total: -34.29 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -71.36 2.88 -68.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982265595.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.310 kcal (2) G-P(sol) polarization free energy of solvation -71.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds