Wall clock time and date at job start Tue Mar 31 2020 21:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.48933 * 2 1 4 4 O 1.43032 * 109.57132 * 239.93587 * 2 1 3 5 5 C 1.42902 * 114.13390 * 178.88896 * 4 2 1 6 6 C 1.53090 * 109.41415 * 61.16259 * 5 4 2 7 7 C 1.53175 * 109.16367 * 302.38636 * 6 5 4 8 8 C 1.53095 * 109.48008 * 120.02358 * 2 1 3 9 9 H 1.08991 * 109.52743 * 297.56430 * 8 2 1 10 10 C 1.50706 * 109.51864 * 57.69160 * 8 2 1 11 11 O 1.21281 * 119.99659 * 359.59266 * 10 8 2 12 12 N 1.34780 * 119.99943 * 179.87540 * 10 8 2 13 13 C 1.47197 * 126.70191 * 179.97438 * 12 10 8 14 14 C 1.53760 * 106.40804 * 211.32676 * 13 12 10 15 15 C 1.52999 * 112.06283 * 103.41946 * 14 13 12 16 16 C 1.54314 * 109.07840 * 229.21244 * 14 13 12 17 17 N 1.48111 * 104.71384 * 88.34415 * 16 14 13 18 18 C 1.36933 * 127.84656 * 219.74694 * 17 16 14 19 19 H 1.08002 * 120.00046 * 164.32035 * 18 17 16 20 20 C 1.38814 * 119.99851 * 344.32315 * 18 17 16 21 21 N 1.31614 * 119.99974 * 350.78030 * 20 18 17 22 22 Si 1.86798 * 119.99797 * 170.77607 * 20 18 17 23 23 H 1.48495 * 109.47174 * 94.81130 * 22 20 18 24 24 H 1.48501 * 109.47393 * 214.80834 * 22 20 18 25 25 H 1.48504 * 109.47276 * 334.81144 * 22 20 18 26 26 C 1.48114 * 104.30891 * 39.78346 * 17 16 14 27 27 C 1.54320 * 104.71174 * 320.21652 * 26 17 16 28 28 C 1.53005 * 112.07554 * 145.86989 * 27 26 17 29 29 C 1.47202 * 126.70094 * 359.68469 * 12 10 8 30 30 H 1.08996 * 109.47072 * 299.97470 * 1 2 3 31 31 H 1.08999 * 109.46594 * 59.97171 * 1 2 3 32 32 H 1.08998 * 109.47067 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.48423 * 301.17467 * 5 4 2 34 34 H 1.09007 * 109.47916 * 181.14368 * 5 4 2 35 35 H 1.08998 * 109.52137 * 182.48265 * 6 5 4 36 36 H 1.08994 * 109.52561 * 62.29835 * 6 5 4 37 37 H 1.09001 * 109.54369 * 297.11820 * 7 6 5 38 38 H 1.08997 * 109.54639 * 176.84544 * 7 6 5 39 39 H 1.08998 * 110.07084 * 330.57101 * 13 12 10 40 40 H 1.09002 * 110.06462 * 92.09111 * 13 12 10 41 41 H 1.08998 * 109.47207 * 61.01432 * 15 14 13 42 42 H 1.09004 * 109.47262 * 181.01502 * 15 14 13 43 43 H 1.09001 * 109.47427 * 301.01675 * 15 14 13 44 44 H 1.08997 * 110.38707 * 207.15791 * 16 14 13 45 45 H 1.09002 * 110.38747 * 329.53561 * 16 14 13 46 46 H 0.96999 * 119.99590 * 180.02562 * 21 20 18 47 47 H 1.08996 * 110.38899 * 201.40964 * 26 17 16 48 48 H 1.08998 * 110.38798 * 79.01887 * 26 17 16 49 49 H 1.08999 * 109.47137 * 302.41563 * 28 27 26 50 50 H 1.09002 * 109.46790 * 62.40868 * 28 27 26 51 51 H 1.09001 * 109.47073 * 182.41102 * 28 27 26 52 52 H 1.09005 * 110.06745 * 267.90758 * 29 12 10 53 53 H 1.09001 * 110.07072 * 29.43205 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 8 2.0091 -0.6751 -1.1664 5 6 3.4334 -0.7103 -1.2775 6 6 4.0190 -1.4605 -0.0784 7 6 3.5712 -0.7708 1.2139 8 6 2.0405 -0.7222 1.2496 9 1 1.7139 -0.1849 2.1399 10 6 1.4927 -2.1258 1.2792 11 8 0.7594 -2.5093 0.3925 12 7 1.8131 -2.9531 2.2938 13 6 1.3645 -4.3439 2.4701 14 6 1.2820 -4.5847 3.9865 15 6 -0.1610 -4.5608 4.4945 16 6 2.0183 -5.8968 4.3296 17 7 3.4246 -5.4909 4.5557 18 6 4.5615 -6.1502 4.1712 19 1 5.5107 -5.6348 4.1709 20 6 4.4941 -7.4808 3.7817 21 7 3.3802 -8.1608 3.9524 22 14 5.9842 -8.3063 3.0153 23 1 6.7523 -9.0177 4.0684 24 1 5.5367 -9.2793 1.9865 25 1 6.8484 -7.2782 2.3815 26 6 3.3221 -4.2103 5.2929 27 6 2.1463 -3.4667 4.6250 28 6 1.3539 -2.6256 5.6278 29 6 2.6848 -2.6441 3.4390 30 1 -0.3633 0.5134 0.8902 31 1 -0.3632 0.5143 -0.8897 32 1 -0.3633 -1.0277 -0.0005 33 1 3.8219 0.3079 -1.2943 34 1 3.7136 -1.2216 -2.1985 35 1 5.1073 -1.4503 -0.1385 36 1 3.6628 -2.4906 -0.0839 37 1 3.9689 0.2436 1.2425 38 1 3.9382 -1.3322 2.0730 39 1 0.3834 -4.4809 2.0156 40 1 2.0841 -5.0287 2.0212 41 1 -0.7306 -5.3527 4.0081 42 1 -0.1691 -4.7174 5.5732 43 1 -0.6114 -3.5953 4.2641 44 1 1.6012 -6.3410 5.2334 45 1 1.9543 -6.5971 3.4968 46 1 3.3332 -9.0907 3.6806 47 1 4.2429 -3.6368 5.1877 48 1 3.1062 -4.3943 6.3453 49 1 0.9846 -3.2667 6.4282 50 1 2.0014 -1.8561 6.0483 51 1 0.5114 -2.1546 5.1214 52 1 3.7120 -2.9329 3.2159 53 1 2.6368 -1.5798 3.6693 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982265602.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:36 Heat of formation + Delta-G solvation = -69.117089 kcal Electronic energy + Delta-G solvation = -32644.865359 eV Core-core repulsion = 28709.362010 eV Total energy + Delta-G solvation = -3935.503349 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.11966 -40.87789 -38.84608 -36.50001 -35.06008 -34.28328 -33.57511 -33.04400 -32.41263 -29.28651 -28.35347 -27.43466 -26.96715 -26.48575 -25.46847 -23.89151 -23.20405 -22.29867 -21.56503 -19.94779 -19.23000 -18.61593 -17.88732 -17.37547 -16.96820 -16.80848 -16.63056 -15.98568 -15.84830 -15.65390 -15.46056 -15.20651 -14.86703 -14.68904 -14.55471 -14.40794 -13.81964 -13.56001 -13.47582 -13.40849 -13.30862 -13.18143 -13.03628 -12.89367 -12.80346 -12.76580 -12.61453 -12.57366 -12.46263 -12.08701 -11.96547 -11.92222 -11.76076 -11.64242 -11.46782 -11.29142 -11.19294 -11.12489 -10.69853 -10.55189 -10.26431 -9.58411 -8.84505 -7.89891 -5.24053 1.42663 1.44454 1.52542 1.70536 2.04744 2.47075 2.92534 3.29360 3.36626 3.56606 3.61504 3.68372 3.74198 3.81476 3.95711 3.98295 4.06498 4.24303 4.26666 4.34187 4.38703 4.40523 4.43900 4.47033 4.62539 4.66029 4.69714 4.73405 4.78875 4.83026 4.87879 4.90932 4.93702 4.95452 4.96813 5.01128 5.08507 5.12418 5.15172 5.18174 5.23963 5.24384 5.34685 5.39627 5.46224 5.49920 5.55104 5.64047 5.77285 6.20896 6.42636 6.70267 7.03286 7.27630 7.72137 8.50285 9.23351 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.004379 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.975857 B = 6392.398572 C = 7517.474828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.106 3.894 3 H 0.094 0.906 4 O -0.397 6.397 5 C 0.058 3.942 6 C -0.160 4.160 7 C -0.117 4.117 8 C -0.131 4.131 9 H 0.134 0.866 10 C 0.531 3.469 11 O -0.568 6.568 12 N -0.610 5.610 13 C 0.134 3.866 14 C -0.083 4.083 15 C -0.115 4.115 16 C 0.180 3.820 17 N -0.615 5.615 18 C -0.228 4.228 19 H 0.080 0.920 20 C -0.061 4.061 21 N -0.946 5.946 22 Si 0.967 3.033 23 H -0.284 1.284 24 H -0.300 1.300 25 H -0.269 1.269 26 C 0.135 3.865 27 C -0.076 4.076 28 C -0.118 4.118 29 C 0.125 3.875 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.026 0.974 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.027 0.973 41 H 0.045 0.955 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.000 1.000 45 H 0.044 0.956 46 H 0.246 0.754 47 H 0.059 0.941 48 H 0.027 0.973 49 H 0.060 0.940 50 H 0.079 0.921 51 H 0.067 0.933 52 H 0.055 0.945 53 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.587 22.082 -0.825 22.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.048 3.952 3 H 0.112 0.888 4 O -0.316 6.316 5 C -0.018 4.018 6 C -0.198 4.198 7 C -0.154 4.154 8 C -0.152 4.152 9 H 0.152 0.848 10 C 0.322 3.678 11 O -0.447 6.447 12 N -0.342 5.342 13 C 0.011 3.989 14 C -0.086 4.086 15 C -0.173 4.173 16 C 0.054 3.946 17 N -0.338 5.338 18 C -0.357 4.357 19 H 0.098 0.902 20 C -0.254 4.254 21 N -0.594 5.594 22 Si 0.796 3.204 23 H -0.211 1.211 24 H -0.227 1.227 25 H -0.194 1.194 26 C 0.010 3.990 27 C -0.078 4.078 28 C -0.175 4.175 29 C 0.003 3.997 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.045 0.955 37 H 0.129 0.871 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.045 0.955 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.018 0.982 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.077 0.923 48 H 0.045 0.955 49 H 0.079 0.921 50 H 0.097 0.903 51 H 0.086 0.914 52 H 0.073 0.927 53 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.991 21.650 -1.592 21.914 hybrid contribution 0.968 -1.873 -0.389 2.144 sum -2.023 19.778 -1.981 19.979 Atomic orbital electron populations 1.22067 0.93325 1.03769 1.02692 1.22058 0.95469 0.94691 0.82977 0.88789 1.88050 1.21612 1.78643 1.43330 1.22668 0.80693 1.00530 0.97918 1.22192 1.02187 0.98735 0.96646 1.21780 0.91892 1.03599 0.98133 1.22131 0.98165 0.91977 1.02892 0.84842 1.20765 0.79898 0.87723 0.79391 1.90619 1.38908 1.77561 1.37656 1.48629 1.48708 1.12843 1.24028 1.21735 0.98072 0.82856 0.96264 1.22349 0.96537 0.96924 0.92772 1.21601 0.92688 1.01705 1.01295 1.21298 0.83518 0.92505 0.97294 1.45092 1.01545 1.23149 1.64020 1.19287 0.87241 0.92397 1.36734 0.90209 1.25586 0.99756 0.96804 1.03284 1.70079 1.27616 1.08735 1.52963 0.85242 0.79249 0.78218 0.77738 1.21136 1.22672 1.19378 1.21912 0.96314 0.86937 0.93881 1.22383 0.95473 0.94451 0.95493 1.21653 0.99586 0.99016 0.97290 1.22291 0.92896 1.00601 0.83924 0.89517 0.92039 0.92049 0.90324 0.89476 0.88944 0.95493 0.87062 0.90467 0.92348 0.95509 0.93544 0.91279 0.91128 0.98168 0.93756 0.94470 0.92290 0.95492 0.92115 0.90260 0.91433 0.92663 0.87347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 9.22 71.98 0.66 -2.98 16 2 C 0.11 2.27 2.85 30.63 0.09 2.36 16 3 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 4 O -0.40 -11.10 9.48 -133.16 -1.26 -12.37 16 5 C 0.06 1.26 6.84 72.01 0.49 1.75 16 6 C -0.16 -3.68 5.87 30.68 0.18 -3.50 16 7 C -0.12 -2.14 5.32 30.71 0.16 -1.98 16 8 C -0.13 -2.75 1.91 -11.45 -0.02 -2.77 16 9 H 0.13 1.94 7.87 -2.39 -0.02 1.92 16 10 C 0.53 16.77 5.72 87.66 0.50 17.28 16 11 O -0.57 -22.71 13.12 12.79 0.17 -22.54 16 12 N -0.61 -19.65 3.31 -814.70 -2.70 -22.35 16 13 C 0.13 5.24 6.13 86.50 0.53 5.77 16 14 C -0.08 -2.97 1.08 -50.77 -0.05 -3.02 16 15 C -0.12 -3.38 7.53 71.98 0.54 -2.84 16 16 C 0.18 8.55 4.77 86.52 0.41 8.96 16 17 N -0.61 -29.90 3.38 -688.61 -2.32 -32.22 16 18 C -0.23 -12.33 10.35 84.03 0.87 -11.46 16 19 H 0.08 4.13 7.85 -2.91 -0.02 4.10 16 20 C -0.06 -3.42 5.40 84.86 0.46 -2.96 16 21 N -0.95 -56.89 10.87 21.65 0.24 -56.65 16 22 Si 0.97 45.82 29.56 68.60 2.03 47.85 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 24 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 26 C 0.14 4.95 6.08 86.52 0.53 5.48 16 27 C -0.08 -2.22 1.09 -50.67 -0.06 -2.28 16 28 C -0.12 -2.44 7.55 71.98 0.54 -1.90 16 29 C 0.13 3.39 4.36 86.60 0.38 3.77 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.90 5.31 -2.39 -0.01 1.88 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 34 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.03 0.86 7.39 -2.39 -0.02 0.84 16 37 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.51 5.12 -2.39 -0.01 1.50 16 39 H 0.06 2.33 7.61 -2.39 -0.02 2.31 16 40 H 0.03 1.28 7.46 -2.39 -0.02 1.26 16 41 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 1.87 7.16 -2.38 -0.02 1.86 16 43 H 0.07 1.78 7.10 -2.39 -0.02 1.76 16 44 H 0.00 0.02 7.99 -2.39 -0.02 0.00 16 45 H 0.04 2.48 6.03 -2.39 -0.01 2.46 16 46 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 47 H 0.06 2.01 7.66 -2.39 -0.02 1.99 16 48 H 0.03 1.00 7.96 -2.39 -0.02 0.98 16 49 H 0.06 1.30 7.17 -2.39 -0.02 1.28 16 50 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.07 1.25 7.09 -2.39 -0.02 1.23 16 52 H 0.06 1.73 6.83 -2.38 -0.02 1.71 16 53 H 0.11 2.02 6.67 -2.39 -0.02 2.00 16 Total: -1.00 -74.03 384.93 3.25 -70.79 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.88 Total: 17.81 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 6.22 Total: 9.69 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -4.79 Total: -111.23 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -1.09 Total: -34.91 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -74.03 3.25 -70.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982265602.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.670 kcal (2) G-P(sol) polarization free energy of solvation -74.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds