Wall clock time and date at job start Tue Mar 31 2020 21:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.48274 * 2 1 4 4 O 1.42903 * 109.49074 * 120.03247 * 2 1 3 5 5 C 1.42899 * 114.10054 * 181.14575 * 4 2 1 6 6 C 1.53089 * 109.41152 * 298.83608 * 5 4 2 7 7 C 1.53180 * 109.16182 * 57.61312 * 6 5 4 8 8 C 1.53092 * 109.47724 * 239.97370 * 2 1 3 9 9 H 1.09000 * 109.53007 * 302.36772 * 8 2 1 10 10 C 1.50698 * 109.52102 * 62.49776 * 8 2 1 11 11 O 1.21281 * 120.00260 * 34.42371 * 10 8 2 12 12 N 1.34781 * 119.99787 * 214.42292 * 10 8 2 13 13 C 1.48116 * 127.84027 * 175.05172 * 12 10 8 14 14 C 1.54320 * 104.71059 * 219.76304 * 13 12 10 15 15 C 1.52998 * 112.92114 * 98.43791 * 14 13 12 16 16 C 1.53757 * 109.07834 * 223.73963 * 14 13 12 17 17 N 1.47206 * 106.40498 * 93.20177 * 16 14 13 18 18 C 1.36934 * 126.69828 * 211.06791 * 17 16 14 19 19 H 1.07995 * 120.00503 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99761 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00030 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00359 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46836 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47301 * 119.99813 * 22 20 18 25 25 H 1.48500 * 109.47335 * 240.00072 * 22 20 18 26 26 C 1.47203 * 106.59422 * 31.33386 * 17 16 14 27 27 C 1.53762 * 106.40703 * 328.66695 * 26 17 16 28 28 C 1.52999 * 112.06543 * 141.00071 * 27 26 17 29 29 C 1.48102 * 127.84681 * 355.03129 * 12 10 8 30 30 H 1.08994 * 109.47252 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47015 * 300.02561 * 1 2 3 32 32 H 1.09002 * 109.46823 * 60.02173 * 1 2 3 33 33 H 1.08994 * 109.48189 * 58.81905 * 5 4 2 34 34 H 1.09003 * 109.48186 * 178.85972 * 5 4 2 35 35 H 1.09010 * 109.52203 * 177.51283 * 6 5 4 36 36 H 1.09000 * 109.52639 * 297.70019 * 6 5 4 37 37 H 1.09002 * 109.53822 * 183.15083 * 7 6 5 38 38 H 1.08998 * 109.54730 * 62.88369 * 7 6 5 39 39 H 1.09000 * 110.38892 * 100.95727 * 13 12 10 40 40 H 1.08994 * 110.39465 * 338.57055 * 13 12 10 41 41 H 1.08995 * 109.47446 * 182.64695 * 15 14 13 42 42 H 1.09005 * 109.47313 * 302.65719 * 15 14 13 43 43 H 1.09005 * 109.46750 * 62.64620 * 15 14 13 44 44 H 1.08997 * 110.06879 * 333.96899 * 16 14 13 45 45 H 1.09004 * 110.11523 * 212.46456 * 16 14 13 46 46 H 0.96996 * 119.99906 * 180.02562 * 21 20 18 47 47 H 1.09003 * 110.06785 * 87.90544 * 26 17 16 48 48 H 1.09001 * 110.06884 * 209.43235 * 26 17 16 49 49 H 1.09007 * 109.47264 * 301.82450 * 28 27 26 50 50 H 1.08996 * 109.47244 * 61.82879 * 28 27 26 51 51 H 1.08994 * 109.46902 * 181.83110 * 28 27 26 52 52 H 1.09000 * 110.39181 * 21.42818 * 29 12 10 53 53 H 1.09004 * 110.48635 * 259.09847 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 8 2.0068 -0.6742 1.1663 5 6 3.4309 -0.7092 1.2788 6 6 4.0177 -1.4599 0.0806 7 6 3.5711 -0.7706 -1.2124 8 6 2.0405 -0.7222 -1.2496 9 1 1.6435 -1.7371 -1.2716 10 6 1.5900 0.0215 -2.4804 11 8 1.5069 1.2314 -2.4615 12 7 1.2795 -0.6578 -3.6023 13 6 0.7271 -0.1196 -4.8669 14 6 -0.3073 -1.1708 -5.3214 15 6 -1.7424 -0.7957 -4.9464 16 6 -0.1489 -1.4113 -6.8318 17 7 0.7647 -2.5563 -6.9770 18 6 1.6439 -2.7768 -8.0034 19 1 1.7139 -2.0688 -8.8159 20 6 2.4443 -3.9108 -8.0001 21 7 2.3579 -4.7745 -7.0106 22 14 3.6443 -4.2113 -9.3998 23 1 3.5488 -3.1004 -10.3807 24 1 5.0264 -4.2792 -8.8611 25 1 3.3111 -5.4935 -10.0709 26 6 0.5438 -3.4213 -5.8065 27 6 0.1479 -2.4914 -4.6478 28 6 -0.9481 -3.1004 -3.7709 29 6 1.4134 -2.1116 -3.8508 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5142 0.8897 32 1 -0.3633 0.5135 -0.8902 33 1 3.8193 0.3091 1.2955 34 1 3.7103 -1.2202 2.2002 35 1 5.1061 -1.4494 0.1417 36 1 3.6616 -2.4900 0.0861 37 1 3.9391 -1.3324 -2.0709 38 1 3.9688 0.2438 -1.2411 39 1 1.5158 -0.0159 -5.6121 40 1 0.2410 0.8400 -4.6911 41 1 -2.4182 -1.5949 -5.2506 42 1 -1.8106 -0.6528 -3.8679 43 1 -2.0207 0.1282 -5.4535 44 1 0.2785 -0.5290 -7.3082 45 1 -1.1158 -1.6452 -7.2775 46 1 2.9175 -5.5668 -7.0081 47 1 -0.2604 -4.1283 -6.0104 48 1 1.4602 -3.9575 -5.5595 49 1 -1.8244 -3.3165 -4.3823 50 1 -0.5825 -4.0233 -3.3209 51 1 -1.2185 -2.3951 -2.9851 52 1 1.4459 -2.6567 -2.9074 53 1 2.3083 -2.3174 -4.4382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982265604.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:44 Heat of formation + Delta-G solvation = -75.204303 kcal Electronic energy + Delta-G solvation = -32206.851449 eV Core-core repulsion = 28271.084139 eV Total energy + Delta-G solvation = -3935.767310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.03694 -40.86873 -39.24628 -36.56584 -34.93912 -34.40512 -33.74625 -33.05680 -32.40542 -29.36861 -28.44830 -27.51641 -26.96137 -26.55070 -25.56342 -23.94292 -23.27364 -21.74493 -21.59582 -20.30125 -19.25390 -18.74689 -18.25164 -17.33139 -17.03830 -16.81856 -16.49885 -16.13977 -15.85869 -15.65634 -15.60541 -15.18184 -14.90874 -14.61250 -14.58543 -14.43582 -14.11447 -13.58050 -13.52166 -13.43620 -13.33130 -13.22075 -13.14619 -13.02686 -12.90511 -12.74832 -12.61699 -12.44798 -12.39520 -12.11613 -12.05520 -11.96354 -11.89340 -11.76248 -11.39998 -11.35749 -11.21975 -11.08752 -10.88647 -10.72228 -10.44075 -9.76600 -8.87406 -7.73225 -5.19727 1.47149 1.48442 1.49725 1.57362 1.86692 2.49784 2.76904 3.30489 3.33882 3.49377 3.55878 3.67778 3.70516 3.77502 3.88831 3.97506 4.08657 4.10677 4.21794 4.25994 4.30355 4.35341 4.42760 4.45799 4.55828 4.62351 4.67762 4.71450 4.75123 4.81301 4.82078 4.82604 4.90219 4.91403 4.94598 4.99295 5.01144 5.03950 5.06058 5.15777 5.19939 5.23186 5.25636 5.34635 5.36817 5.46984 5.54837 5.67289 5.88687 6.20550 6.40461 6.54095 7.04540 7.14332 7.79680 8.46952 9.25302 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.003813 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.261689 B = 7341.434669 C = 8331.804346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.110 3.890 3 H 0.057 0.943 4 O -0.386 6.386 5 C 0.053 3.947 6 C -0.147 4.147 7 C -0.113 4.113 8 C -0.128 4.128 9 H 0.106 0.894 10 C 0.543 3.457 11 O -0.581 6.581 12 N -0.611 5.611 13 C 0.125 3.875 14 C -0.074 4.074 15 C -0.116 4.116 16 C 0.140 3.860 17 N -0.616 5.616 18 C -0.231 4.231 19 H 0.077 0.923 20 C -0.059 4.059 21 N -0.942 5.942 22 Si 0.972 3.028 23 H -0.272 1.272 24 H -0.292 1.292 25 H -0.293 1.293 26 C 0.153 3.847 27 C -0.083 4.083 28 C -0.116 4.116 29 C 0.127 3.873 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.041 0.959 45 H 0.024 0.976 46 H 0.248 0.752 47 H -0.014 1.014 48 H 0.098 0.902 49 H 0.060 0.940 50 H 0.060 0.940 51 H 0.068 0.932 52 H 0.094 0.906 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.659 6.041 15.950 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.051 3.949 3 H 0.075 0.925 4 O -0.305 6.305 5 C -0.023 4.023 6 C -0.184 4.184 7 C -0.151 4.151 8 C -0.149 4.149 9 H 0.124 0.876 10 C 0.334 3.666 11 O -0.462 6.462 12 N -0.342 5.342 13 C 0.003 3.997 14 C -0.077 4.077 15 C -0.174 4.174 16 C 0.014 3.986 17 N -0.340 5.340 18 C -0.359 4.359 19 H 0.095 0.905 20 C -0.252 4.252 21 N -0.592 5.592 22 Si 0.801 3.199 23 H -0.197 1.197 24 H -0.220 1.220 25 H -0.220 1.220 26 C 0.027 3.973 27 C -0.086 4.086 28 C -0.174 4.174 29 C 0.005 3.995 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.042 0.958 46 H 0.058 0.942 47 H 0.004 0.996 48 H 0.115 0.885 49 H 0.079 0.921 50 H 0.079 0.921 51 H 0.087 0.913 52 H 0.112 0.888 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.624 6.519 16.078 17.547 hybrid contribution 1.032 -0.291 -1.689 2.001 sum -1.592 6.228 14.389 15.760 Atomic orbital electron populations 1.21760 0.92186 1.03291 1.02733 1.21758 0.95770 0.94334 0.82998 0.92465 1.87928 1.22559 1.78030 1.41967 1.22825 0.79882 1.00338 0.99295 1.22174 1.02547 1.00387 0.93310 1.21554 0.91762 1.01791 0.99974 1.21970 0.98869 1.01506 0.92578 0.87600 1.20395 0.75921 0.86909 0.83388 1.90651 1.55848 1.15154 1.84508 1.49100 1.62470 1.09778 1.12892 1.22294 0.95440 0.97295 0.84696 1.22240 0.96013 0.94151 0.95253 1.21615 0.92551 1.01666 1.01519 1.21523 0.92956 0.90422 0.93729 1.44723 1.42969 1.22810 1.23463 1.19416 1.12365 1.04935 0.99231 0.90493 1.25435 1.01882 0.97060 1.00776 1.69825 1.43248 1.13282 1.32828 0.85096 0.78492 0.77402 0.78862 1.19661 1.21954 1.22027 1.21765 1.00086 0.91057 0.84346 1.22390 0.94818 0.95356 0.95996 1.21609 0.96807 1.00352 0.98587 1.22428 0.97694 0.79484 0.99895 0.91034 0.90619 0.92063 0.92720 0.86394 0.88483 0.90377 0.91409 0.91831 0.93098 0.90238 0.91534 0.91736 0.91769 0.94063 0.95797 0.94221 0.99568 0.88453 0.92075 0.92062 0.91277 0.88814 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.34 71.98 0.67 -2.42 16 2 C 0.11 2.59 2.48 30.63 0.08 2.67 16 3 H 0.06 1.50 7.77 -2.39 -0.02 1.48 16 4 O -0.39 -8.48 10.41 -148.98 -1.55 -10.03 16 5 C 0.05 0.87 6.84 72.01 0.49 1.36 16 6 C -0.15 -2.44 6.14 30.68 0.19 -2.25 16 7 C -0.11 -2.53 5.29 30.72 0.16 -2.37 16 8 C -0.13 -3.16 1.90 -11.45 -0.02 -3.18 16 9 H 0.11 2.47 6.44 -2.39 -0.02 2.45 16 10 C 0.54 16.87 5.93 87.66 0.52 17.39 16 11 O -0.58 -21.32 16.12 -3.03 -0.05 -21.37 16 12 N -0.61 -19.49 3.31 -808.44 -2.68 -22.17 16 13 C 0.13 4.22 6.11 86.52 0.53 4.74 16 14 C -0.07 -2.41 1.08 -50.77 -0.05 -2.46 16 15 C -0.12 -2.95 7.52 71.98 0.54 -2.41 16 16 C 0.14 5.51 6.17 86.50 0.53 6.04 16 17 N -0.62 -29.99 3.39 -695.47 -2.36 -32.35 16 18 C -0.23 -12.42 10.34 84.03 0.87 -11.55 16 19 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 20 C -0.06 -3.19 5.49 84.86 0.47 -2.72 16 21 N -0.94 -52.90 10.08 21.65 0.22 -52.68 16 22 Si 0.97 44.43 29.55 68.60 2.03 46.46 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 25 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 26 C 0.15 6.92 5.16 86.50 0.45 7.37 16 27 C -0.08 -2.80 1.08 -50.77 -0.05 -2.86 16 28 C -0.12 -3.10 7.52 71.98 0.54 -2.56 16 29 C 0.13 4.16 6.01 86.52 0.52 4.68 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.49 7.01 -2.39 -0.02 1.47 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.12 1.40 8.14 -2.39 -0.02 1.39 16 35 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.05 1.95 7.53 -2.39 -0.02 1.93 16 40 H 0.08 2.56 7.71 -2.39 -0.02 2.54 16 41 H 0.07 1.63 7.08 -2.39 -0.02 1.62 16 42 H 0.06 1.51 7.17 -2.38 -0.02 1.49 16 43 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.04 1.62 7.60 -2.39 -0.02 1.60 16 45 H 0.02 0.94 7.88 -2.39 -0.02 0.92 16 46 H 0.25 13.55 8.31 -92.71 -0.77 12.78 16 47 H -0.01 -0.66 7.88 -2.39 -0.02 -0.68 16 48 H 0.10 5.02 4.89 -2.39 -0.01 5.01 16 49 H 0.06 1.62 7.10 -2.38 -0.02 1.60 16 50 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 51 H 0.07 1.58 7.15 -2.39 -0.02 1.56 16 52 H 0.09 2.57 6.22 -2.39 -0.01 2.56 16 53 H 0.05 2.10 7.53 -2.39 -0.02 2.08 16 Total: -1.00 -64.04 393.12 2.91 -61.13 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.88 Total: 21.53 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 6.43 Total: 9.48 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -4.82 Total: -107.20 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -1.60 Total: -31.40 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -64.04 2.91 -61.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982265604.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.078 kcal (2) G-P(sol) polarization free energy of solvation -64.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds