Wall clock time and date at job start Tue Mar 31 2020 20:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.99313 * 2 1 4 4 O 1.43744 * 109.87576 * 238.91687 * 2 1 3 5 5 C 1.44377 * 106.97643 * 214.06271 * 4 2 1 6 6 C 1.54997 * 103.49210 * 40.06455 * 5 4 2 7 7 C 1.54101 * 109.87847 * 121.08926 * 2 1 3 8 8 C 1.53001 * 110.49059 * 2.77335 * 7 2 1 9 9 C 1.50696 * 110.48542 * 240.25967 * 7 2 1 10 10 O 1.21279 * 120.00280 * 0.02562 * 9 7 2 11 11 N 1.34779 * 120.00041 * 179.97438 * 9 7 2 12 12 C 1.47199 * 126.70517 * 179.97438 * 11 9 7 13 13 C 1.53755 * 106.41126 * 211.33805 * 12 11 9 14 14 C 1.53000 * 112.06628 * 103.40542 * 13 12 11 15 15 C 1.54314 * 109.07836 * 228.11215 * 13 12 11 16 16 N 1.50799 * 103.42504 * 88.72730 * 15 13 12 17 17 C 1.36939 * 127.62751 * 219.60428 * 16 15 13 18 18 H 1.07996 * 119.99910 * 165.03363 * 17 16 15 19 19 C 1.38816 * 119.99830 * 345.03495 * 17 16 15 20 20 N 1.31621 * 119.99790 * 350.64833 * 19 17 16 21 21 Si 1.86798 * 119.99972 * 170.64691 * 19 17 16 22 22 H 1.48502 * 109.46836 * 89.99769 * 21 19 17 23 23 H 1.48490 * 109.47267 * 209.99840 * 21 19 17 24 24 H 1.48504 * 109.46996 * 330.00324 * 21 19 17 25 25 C 1.48113 * 104.52593 * 39.78662 * 16 15 13 26 26 C 1.54308 * 104.71530 * 320.07286 * 25 16 15 27 27 C 1.53005 * 112.91866 * 146.34547 * 26 25 16 28 28 C 1.47200 * 126.70277 * 359.69266 * 11 9 7 29 29 H 1.08998 * 109.46968 * 179.63240 * 1 2 3 30 30 H 1.09002 * 109.46586 * 299.62402 * 1 2 3 31 31 H 1.08998 * 109.47197 * 59.62644 * 1 2 3 32 32 H 1.09003 * 110.61722 * 158.56322 * 5 4 2 33 33 H 1.08995 * 110.61959 * 281.55705 * 5 4 2 34 34 H 1.08998 * 110.90527 * 204.78265 * 6 5 4 35 35 H 1.08997 * 110.94337 * 81.18447 * 6 5 4 36 36 H 1.09001 * 109.47100 * 60.00270 * 8 7 2 37 37 H 1.08996 * 109.47262 * 179.97438 * 8 7 2 38 38 H 1.08996 * 109.47224 * 300.00564 * 8 7 2 39 39 H 1.09005 * 110.06927 * 330.57628 * 12 11 9 40 40 H 1.09006 * 110.07047 * 92.10034 * 12 11 9 41 41 H 1.09001 * 109.47212 * 61.02151 * 14 13 12 42 42 H 1.09005 * 109.47032 * 181.01438 * 14 13 12 43 43 H 1.09001 * 109.47181 * 301.01380 * 14 13 12 44 44 H 1.09006 * 110.38572 * 207.14135 * 15 13 12 45 45 H 1.08992 * 110.38953 * 329.52350 * 15 13 12 46 46 H 0.97006 * 119.99308 * 179.97438 * 20 19 17 47 47 H 1.09006 * 110.38571 * 201.26647 * 25 16 15 48 48 H 1.08991 * 110.38747 * 78.88456 * 25 16 15 49 49 H 1.08996 * 109.46856 * 301.84062 * 27 26 25 50 50 H 1.08995 * 109.47194 * 61.83969 * 27 26 25 51 51 H 1.09002 * 109.46859 * 181.83656 * 27 26 25 52 52 H 1.09007 * 110.06633 * 267.90613 * 28 11 9 53 53 H 1.08999 * 110.07290 * 29.43140 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6979 -1.1577 5 6 3.2379 -1.3642 -0.7649 6 6 2.9195 -1.8916 0.6574 7 6 2.0540 -0.7483 1.2410 8 6 0.8899 -1.3191 2.0534 9 6 2.8919 0.1682 2.0948 10 8 3.0657 1.3202 1.7580 11 7 3.4474 -0.2921 3.2332 12 6 4.2873 0.4688 4.1726 13 6 5.2732 -0.5382 4.7875 14 6 6.6734 -0.4139 4.1834 15 6 5.2849 -0.3609 6.3204 16 7 4.1848 -1.2804 6.7876 17 6 3.2710 -1.0531 7.7819 18 1 2.3925 -1.6762 7.8607 19 6 3.4741 -0.0217 8.6885 20 7 4.6241 0.6182 8.7106 21 14 2.1152 0.4581 9.8771 22 1 2.2483 -0.3334 11.1265 23 1 2.2226 1.9049 10.1938 24 1 0.7945 0.1840 9.2558 25 6 4.3182 -2.4832 5.9337 26 6 4.6460 -1.9329 4.5298 27 6 5.5790 -2.8479 3.7340 28 6 3.3280 -1.6523 3.7831 29 1 -0.3633 -1.0276 -0.0066 30 1 -0.3632 0.5080 0.8934 31 1 -0.3633 0.5196 -0.8866 32 1 3.4583 -2.1908 -1.4403 33 1 4.0684 -0.6590 -0.7358 34 1 3.8332 -2.0226 1.2372 35 1 2.3541 -2.8223 0.6103 36 1 0.3214 -2.0137 1.4349 37 1 1.2787 -1.8445 2.9256 38 1 0.2403 -0.5063 2.3780 39 1 4.8323 1.2483 3.6401 40 1 3.6687 0.9111 4.9536 41 1 7.0654 0.5845 4.3774 42 1 7.3312 -1.1565 4.6351 43 1 6.6211 -0.5811 3.1076 44 1 6.2458 -0.6709 6.7311 45 1 5.0746 0.6754 6.5844 46 1 4.7657 1.3392 9.3440 47 1 3.3817 -3.0407 5.9139 48 1 5.1300 -3.1156 6.2928 49 1 6.5067 -2.9910 4.2879 50 1 5.0961 -3.8126 3.5786 51 1 5.7986 -2.3919 2.7687 52 1 2.4858 -1.7041 4.4732 53 1 3.1950 -2.3720 2.9754 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982403007.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:58 Heat of formation + Delta-G solvation = -63.041422 kcal Electronic energy + Delta-G solvation = -32636.451735 eV Core-core repulsion = 28701.211847 eV Total energy + Delta-G solvation = -3935.239888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.35700 -40.99675 -39.14203 -36.48952 -35.24514 -34.43040 -33.19656 -32.42179 -32.36095 -28.84830 -28.43031 -27.67669 -26.95702 -26.47859 -26.26648 -24.07406 -23.33737 -22.08762 -21.57737 -19.95029 -19.29187 -18.74241 -17.80341 -17.41606 -17.04929 -16.75786 -16.59678 -16.23552 -15.76653 -15.57527 -15.44566 -15.10592 -14.84825 -14.80392 -14.60343 -14.51486 -13.91430 -13.66084 -13.52614 -13.43274 -13.35791 -13.07038 -13.04297 -12.90519 -12.75337 -12.62108 -12.58510 -12.49749 -12.35755 -12.19829 -12.01857 -11.92065 -11.89438 -11.74842 -11.71938 -11.38352 -11.19424 -11.13673 -10.90473 -10.66920 -10.56406 -9.73888 -8.83934 -7.88041 -5.20976 1.44446 1.46101 1.46902 1.53735 1.88348 2.48719 2.81498 3.28047 3.32801 3.34389 3.52966 3.59308 3.65159 3.70227 3.90698 3.95601 4.09778 4.22006 4.24193 4.25473 4.35930 4.38670 4.42028 4.54576 4.57886 4.59568 4.65689 4.72019 4.77064 4.83084 4.86465 4.89025 4.90592 4.94648 4.97693 4.99576 5.01966 5.05085 5.09177 5.14762 5.17644 5.23956 5.33351 5.33684 5.38700 5.45150 5.51699 5.63049 5.76820 5.87548 6.18739 6.53787 7.00585 7.01956 7.71767 8.50970 9.25556 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.004004 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.215667 B = 6990.657654 C = 7807.323269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.082 3.918 3 H 0.058 0.942 4 O -0.385 6.385 5 C 0.042 3.958 6 C -0.138 4.138 7 C -0.102 4.102 8 C -0.144 4.144 9 C 0.536 3.464 10 O -0.589 6.589 11 N -0.600 5.600 12 C 0.130 3.870 13 C -0.082 4.082 14 C -0.118 4.118 15 C 0.179 3.821 16 N -0.619 5.619 17 C -0.226 4.226 18 H 0.080 0.920 19 C -0.061 4.061 20 N -0.946 5.946 21 Si 0.965 3.035 22 H -0.285 1.285 23 H -0.300 1.300 24 H -0.271 1.271 25 C 0.139 3.861 26 C -0.074 4.074 27 C -0.121 4.121 28 C 0.118 3.882 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.125 0.875 33 H 0.046 0.954 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.035 0.965 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.007 0.993 45 H 0.047 0.953 46 H 0.246 0.754 47 H 0.060 0.940 48 H 0.028 0.972 49 H 0.062 0.938 50 H 0.080 0.920 51 H 0.067 0.933 52 H 0.060 0.940 53 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.541 -10.571 -18.068 21.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.024 3.976 3 H 0.075 0.925 4 O -0.304 6.304 5 C -0.034 4.034 6 C -0.176 4.176 7 C -0.105 4.105 8 C -0.201 4.201 9 C 0.326 3.674 10 O -0.470 6.470 11 N -0.331 5.331 12 C 0.007 3.993 13 C -0.085 4.085 14 C -0.175 4.175 15 C 0.054 3.946 16 N -0.343 5.343 17 C -0.355 4.355 18 H 0.098 0.902 19 C -0.254 4.254 20 N -0.594 5.594 21 Si 0.795 3.205 22 H -0.212 1.212 23 H -0.227 1.227 24 H -0.196 1.196 25 C 0.013 3.987 26 C -0.076 4.076 27 C -0.178 4.178 28 C -0.004 4.004 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.143 0.857 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.138 0.862 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.025 0.975 45 H 0.066 0.934 46 H 0.055 0.945 47 H 0.078 0.922 48 H 0.045 0.955 49 H 0.081 0.919 50 H 0.099 0.901 51 H 0.086 0.914 52 H 0.078 0.922 53 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.684 -9.813 -18.315 20.951 hybrid contribution -0.232 1.353 1.767 2.237 sum -2.916 -8.460 -16.549 18.813 Atomic orbital electron populations 1.22003 0.91765 1.03956 1.02524 1.22720 0.96488 0.95387 0.83014 0.92460 1.88844 1.40336 1.67960 1.33278 1.23704 0.86868 0.96798 0.96023 1.23407 1.00511 0.97746 0.95912 1.22052 0.96946 0.95887 0.95605 1.22160 0.95914 1.01742 1.00270 1.20582 0.79124 0.87765 0.79952 1.90645 1.63083 1.20818 1.72438 1.48481 1.49478 1.13899 1.21214 1.21859 0.92102 0.94748 0.90570 1.22329 0.95301 0.94450 0.96397 1.21645 0.93656 1.01728 1.00518 1.21793 0.89339 0.95206 0.88249 1.45747 1.34912 1.14792 1.38891 1.19295 0.99143 1.13314 1.03732 0.90207 1.25536 0.98675 1.00922 1.00309 1.70067 1.23776 1.26101 1.39498 0.85277 0.79440 0.76547 0.79278 1.21185 1.22702 1.19598 1.21827 0.98834 0.89061 0.88984 1.22379 0.94725 0.94751 0.95785 1.21686 0.98470 0.98565 0.99083 1.22530 0.97379 0.82660 0.97853 0.89690 0.91091 0.91822 0.85723 0.93599 0.88951 0.86182 0.88023 0.90949 0.92449 0.92098 0.94687 0.93436 0.91139 0.91252 0.97497 0.93423 0.94529 0.92182 0.95462 0.91933 0.90081 0.91439 0.92150 0.87047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 8.40 71.98 0.60 -2.21 16 2 C 0.08 2.02 3.67 30.97 0.11 2.13 16 3 H 0.06 1.82 6.44 -2.39 -0.02 1.80 16 4 O -0.38 -9.14 11.19 -148.98 -1.67 -10.81 16 5 C 0.04 0.76 7.72 72.67 0.56 1.33 16 6 C -0.14 -2.23 5.06 31.90 0.16 -2.07 16 7 C -0.10 -2.29 0.61 -51.94 -0.03 -2.32 16 8 C -0.14 -2.67 7.04 71.98 0.51 -2.16 16 9 C 0.54 16.95 6.57 87.66 0.58 17.53 16 10 O -0.59 -23.65 15.49 -3.03 -0.05 -23.70 16 11 N -0.60 -18.78 3.26 -814.70 -2.66 -21.43 16 12 C 0.13 4.89 6.11 86.50 0.53 5.42 16 13 C -0.08 -2.81 1.06 -50.77 -0.05 -2.87 16 14 C -0.12 -3.30 7.47 71.98 0.54 -2.76 16 15 C 0.18 8.23 4.89 85.98 0.42 8.65 16 16 N -0.62 -29.28 3.43 -681.43 -2.34 -31.62 16 17 C -0.23 -11.98 10.36 84.03 0.87 -11.11 16 18 H 0.08 4.05 7.85 -2.91 -0.02 4.02 16 19 C -0.06 -3.37 5.42 84.86 0.46 -2.91 16 20 N -0.95 -55.85 10.84 21.65 0.23 -55.62 16 21 Si 0.97 45.16 29.56 68.60 2.03 47.19 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 25 C 0.14 4.90 6.12 86.51 0.53 5.42 16 26 C -0.07 -2.07 1.09 -50.67 -0.06 -2.13 16 27 C -0.12 -2.33 7.55 71.98 0.54 -1.78 16 28 C 0.12 3.06 3.98 86.60 0.34 3.41 16 29 H 0.08 1.30 6.67 -2.39 -0.02 1.29 16 30 H 0.07 1.38 6.87 -2.39 -0.02 1.36 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 1.44 6.43 -2.39 -0.02 1.42 16 35 H 0.12 1.27 7.85 -2.39 -0.02 1.25 16 36 H 0.10 1.32 6.78 -2.39 -0.02 1.30 16 37 H 0.07 1.35 4.90 -2.39 -0.01 1.33 16 38 H 0.06 1.19 6.74 -2.39 -0.02 1.17 16 39 H 0.06 2.33 7.61 -2.38 -0.02 2.32 16 40 H 0.03 1.60 7.48 -2.38 -0.02 1.58 16 41 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.07 1.82 7.17 -2.38 -0.02 1.80 16 43 H 0.07 1.67 7.08 -2.39 -0.02 1.65 16 44 H 0.01 0.34 7.97 -2.38 -0.02 0.32 16 45 H 0.05 2.57 6.11 -2.39 -0.01 2.56 16 46 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 47 H 0.06 1.97 7.66 -2.38 -0.02 1.95 16 48 H 0.03 0.97 7.99 -2.39 -0.02 0.95 16 49 H 0.06 1.25 7.15 -2.39 -0.02 1.23 16 50 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.07 1.15 7.10 -2.39 -0.02 1.14 16 52 H 0.06 1.81 6.86 -2.38 -0.02 1.79 16 53 H 0.11 2.03 4.60 -2.39 -0.01 2.02 16 Total: -1.00 -71.03 382.54 3.08 -67.95 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.90 Total: 16.47 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 6.62 Total: 11.57 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -4.76 Total: -108.67 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -1.71 Total: -34.51 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -71.03 3.08 -67.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982403007.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.909 kcal (2) G-P(sol) polarization free energy of solvation -71.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds