Wall clock time and date at job start Tue Mar 31 2020 20:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.87034 * 2 1 4 4 O 1.43740 * 110.00279 * 121.08116 * 2 1 3 5 5 C 1.44386 * 106.97650 * 146.00642 * 4 2 1 6 6 C 1.54993 * 103.48820 * 319.94566 * 5 4 2 7 7 C 1.54096 * 109.87980 * 238.99017 * 2 1 3 8 8 C 1.53001 * 110.49180 * 357.20354 * 7 2 1 9 9 C 1.50697 * 110.49101 * 119.72230 * 7 2 1 10 10 O 1.21283 * 119.99553 * 359.97438 * 9 7 2 11 11 N 1.34779 * 120.00395 * 180.02562 * 9 7 2 12 12 C 1.49976 * 127.21604 * 359.39567 * 11 9 7 13 13 C 1.54306 * 103.81577 * 219.19311 * 12 11 9 14 14 C 1.53002 * 112.07969 * 99.66363 * 13 12 11 15 15 C 1.53759 * 109.07643 * 224.36038 * 13 12 11 16 16 N 1.47201 * 106.40831 * 94.29445 * 15 13 12 17 17 C 1.36937 * 126.70662 * 211.34835 * 16 15 13 18 18 H 1.07994 * 120.00158 * 179.97438 * 17 16 15 19 19 C 1.38817 * 119.99647 * 359.97438 * 17 16 15 20 20 N 1.31623 * 120.00089 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99997 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47340 * 59.99337 * 21 19 17 23 23 H 1.48505 * 109.47159 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47035 * 299.99225 * 21 19 17 25 25 C 1.47206 * 106.59531 * 31.32803 * 16 15 13 26 26 C 1.53759 * 106.40405 * 328.67533 * 25 16 15 27 27 C 1.53008 * 112.06709 * 140.99932 * 26 25 16 28 28 C 1.48109 * 127.84330 * 179.97438 * 11 9 7 29 29 H 1.09001 * 109.47361 * 181.00598 * 1 2 3 30 30 H 1.08999 * 109.47743 * 301.01168 * 1 2 3 31 31 H 1.09004 * 109.46772 * 61.01321 * 1 2 3 32 32 H 1.09003 * 110.61159 * 78.44586 * 5 4 2 33 33 H 1.08996 * 110.61619 * 201.43912 * 5 4 2 34 34 H 1.09002 * 110.90275 * 278.81956 * 6 5 4 35 35 H 1.09001 * 110.90772 * 155.22331 * 6 5 4 36 36 H 1.08998 * 109.47578 * 181.84489 * 8 7 2 37 37 H 1.09003 * 109.46801 * 301.84846 * 8 7 2 38 38 H 1.09002 * 109.46958 * 61.84261 * 8 7 2 39 39 H 1.08997 * 110.28595 * 100.93658 * 12 11 9 40 40 H 1.09000 * 111.34881 * 337.96660 * 12 11 9 41 41 H 1.08997 * 109.47191 * 182.01359 * 14 13 12 42 42 H 1.09003 * 109.46808 * 302.00966 * 14 13 12 43 43 H 1.08997 * 109.47088 * 62.00863 * 14 13 12 44 44 H 1.08997 * 110.07272 * 335.05277 * 15 13 12 45 45 H 1.09005 * 110.11317 * 213.55053 * 15 13 12 46 46 H 0.96997 * 120.00175 * 180.02562 * 20 19 17 47 47 H 1.08998 * 110.07082 * 87.91289 * 25 16 15 48 48 H 1.08997 * 110.07101 * 209.43880 * 25 16 15 49 49 H 1.08999 * 109.46951 * 61.01023 * 27 26 25 50 50 H 1.08996 * 109.47344 * 181.01115 * 27 26 25 51 51 H 1.09000 * 109.46636 * 301.01376 * 27 26 25 52 52 H 1.09005 * 110.38869 * 21.40771 * 28 11 9 53 53 H 1.09000 * 110.48788 * 259.07439 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0217 -0.6973 1.1568 5 6 3.2418 -1.3609 0.7620 6 6 2.9227 -1.8882 -0.6601 7 6 2.0540 -0.7466 -1.2420 8 6 0.8899 -1.3168 -2.0549 9 6 2.8915 0.1712 -2.0948 10 8 3.0650 1.3229 -1.7565 11 7 3.4470 -0.2876 -3.2339 12 6 3.3488 -1.6743 -3.7966 13 6 4.7608 -1.9454 -4.3569 14 6 5.6058 -2.7912 -3.4021 15 6 4.6345 -2.5940 -5.7452 16 7 4.7140 -1.4982 -6.7249 17 6 4.0956 -1.4452 -7.9456 18 1 4.2293 -0.5827 -8.5816 19 6 3.2970 -2.5002 -8.3654 20 7 3.1346 -3.5516 -7.5904 21 14 2.4541 -2.4283 -10.0308 22 1 3.4782 -2.3062 -11.0992 23 1 1.6659 -3.6692 -10.2407 24 1 1.5483 -1.2524 -10.0767 25 6 5.5876 -0.4702 -6.1359 26 6 5.3870 -0.5502 -4.6136 27 6 6.6986 -0.3561 -3.8499 28 6 4.2933 0.4557 -4.1956 29 1 -0.3634 -1.0275 0.0180 30 1 -0.3634 0.5294 0.8807 31 1 -0.3633 0.4980 -0.8990 32 1 4.0708 -0.6538 0.7323 33 1 3.4648 -2.1872 1.4369 34 1 2.3591 -2.8200 -0.6120 35 1 3.8359 -2.0171 -1.2411 36 1 1.2799 -1.8684 -2.9103 37 1 0.3025 -1.9871 -1.4274 38 1 0.2580 -0.5010 -2.4061 39 1 2.6100 -1.7058 -4.5974 40 1 3.1017 -2.4003 -3.0220 41 1 6.6026 -2.9264 -3.8218 42 1 5.6824 -2.2852 -2.4396 43 1 5.1343 -3.7642 -3.2645 44 1 3.6762 -3.1058 -5.8333 45 1 5.4506 -3.2987 -5.9054 46 1 2.5768 -4.2889 -7.8840 47 1 6.6282 -0.6749 -6.3873 48 1 5.3017 0.5167 -6.4995 49 1 7.1063 0.6299 -4.0728 50 1 6.5113 -0.4384 -2.7793 51 1 7.4125 -1.1216 -4.1538 52 1 4.7409 1.3254 -3.7145 53 1 3.7074 0.7617 -5.0623 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982403009.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:02 Heat of formation + Delta-G solvation = -60.558693 kcal Electronic energy + Delta-G solvation = -32702.095509 eV Core-core repulsion = 28766.963280 eV Total energy + Delta-G solvation = -3935.132229 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.28254 -41.01562 -39.12848 -36.57380 -35.28672 -34.33746 -33.14259 -32.60211 -32.25322 -28.87560 -28.48378 -27.65677 -26.87097 -26.55671 -26.28936 -24.11472 -23.32820 -21.98977 -21.57571 -19.89350 -19.37671 -18.68260 -17.90560 -17.35812 -17.02592 -16.76593 -16.49259 -16.23051 -15.83429 -15.58497 -15.44273 -15.06600 -14.89391 -14.72298 -14.62837 -14.56217 -13.92257 -13.68982 -13.54665 -13.36168 -13.25283 -13.12012 -13.03352 -12.98428 -12.70466 -12.65142 -12.60214 -12.47577 -12.33612 -12.15236 -12.06984 -11.91725 -11.89236 -11.77966 -11.71264 -11.36988 -11.19220 -11.08931 -10.88366 -10.71631 -10.55124 -9.78380 -8.86447 -7.72095 -5.18358 1.48753 1.49462 1.49990 1.56289 1.83339 2.50937 2.80805 3.23826 3.34417 3.35435 3.53621 3.65370 3.65898 3.74409 3.88082 3.96487 4.09546 4.19726 4.23311 4.26409 4.34451 4.38481 4.43978 4.52784 4.57630 4.60179 4.64448 4.71817 4.75150 4.79109 4.81328 4.83384 4.88626 4.93191 4.95659 5.00527 5.01532 5.02557 5.06805 5.14052 5.14634 5.23943 5.32868 5.35049 5.36865 5.47155 5.55031 5.67585 5.87493 5.89505 6.41647 6.50482 7.02200 7.15552 7.80681 8.47918 9.26014 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014944 B = 0.003963 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.271015 B = 7064.071310 C = 7771.736759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.084 3.916 3 H 0.063 0.937 4 O -0.385 6.385 5 C 0.045 3.955 6 C -0.142 4.142 7 C -0.103 4.103 8 C -0.143 4.143 9 C 0.541 3.459 10 O -0.585 6.585 11 N -0.609 5.609 12 C 0.126 3.874 13 C -0.085 4.085 14 C -0.119 4.119 15 C 0.153 3.847 16 N -0.615 5.615 17 C -0.234 4.234 18 H 0.076 0.924 19 C -0.056 4.056 20 N -0.940 5.940 21 Si 0.971 3.029 22 H -0.283 1.283 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.140 3.860 26 C -0.074 4.074 27 C -0.116 4.116 28 C 0.126 3.874 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.105 0.895 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.100 0.900 45 H -0.013 1.013 46 H 0.248 0.752 47 H 0.024 0.976 48 H 0.040 0.960 49 H 0.062 0.938 50 H 0.062 0.938 51 H 0.067 0.933 52 H 0.076 0.924 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.124 0.733 15.466 15.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.026 3.974 3 H 0.081 0.919 4 O -0.304 6.304 5 C -0.031 4.031 6 C -0.180 4.180 7 C -0.106 4.106 8 C -0.200 4.200 9 C 0.331 3.669 10 O -0.466 6.466 11 N -0.340 5.340 12 C 0.005 3.995 13 C -0.088 4.088 14 C -0.176 4.176 15 C 0.027 3.973 16 N -0.339 5.339 17 C -0.363 4.363 18 H 0.094 0.906 19 C -0.249 4.249 20 N -0.590 5.590 21 Si 0.800 3.200 22 H -0.210 1.210 23 H -0.218 1.218 24 H -0.209 1.209 25 C 0.014 3.986 26 C -0.076 4.076 27 C -0.173 4.173 28 C 0.004 3.996 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.141 0.859 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.123 0.877 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.117 0.883 45 H 0.005 0.995 46 H 0.059 0.941 47 H 0.041 0.959 48 H 0.058 0.942 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.086 0.914 52 H 0.094 0.906 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.086 1.266 15.753 15.804 hybrid contribution -0.191 0.289 -1.790 1.823 sum -0.277 1.555 13.964 14.053 Atomic orbital electron populations 1.22008 0.91844 1.03794 1.02673 1.22714 0.96416 0.95482 0.82810 0.91933 1.88840 1.40186 1.68107 1.33280 1.23679 0.86958 0.96841 0.95648 1.23410 1.00461 0.97823 0.96277 1.22042 0.96832 0.95934 0.95806 1.22132 0.96148 1.01667 1.00056 1.20402 0.78988 0.87631 0.79836 1.90634 1.63241 1.20475 1.72266 1.49423 1.49719 1.13607 1.21254 1.22979 0.96933 0.82081 0.97506 1.22418 0.94239 0.95110 0.96984 1.21667 0.99217 0.98949 0.97792 1.21784 1.01649 0.89369 0.84466 1.44692 1.54342 1.18086 1.16777 1.19329 1.21594 1.02461 0.92891 0.90647 1.25403 1.01475 0.96311 1.01700 1.69790 1.43693 1.08336 1.37159 0.85263 0.78185 0.76543 0.79974 1.20962 1.21777 1.20851 1.21515 0.93475 0.92393 0.91249 1.22225 0.95543 0.94335 0.95466 1.21612 0.94261 1.02148 0.99321 1.22280 0.91292 0.95017 0.91045 0.90110 0.91640 0.90878 0.93182 0.85950 0.86939 0.89215 0.91627 0.88407 0.92095 0.92647 0.87662 0.92157 0.91312 0.91617 0.88268 0.99536 0.94142 0.95864 0.94165 0.91948 0.91890 0.91419 0.90553 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.41 71.98 0.61 -2.31 16 2 C 0.08 2.10 3.66 30.96 0.11 2.21 16 3 H 0.06 1.93 6.44 -2.39 -0.02 1.92 16 4 O -0.38 -9.48 11.19 -148.98 -1.67 -11.15 16 5 C 0.04 0.88 7.72 72.66 0.56 1.44 16 6 C -0.14 -2.70 5.04 31.89 0.16 -2.54 16 7 C -0.10 -2.47 0.61 -51.94 -0.03 -2.50 16 8 C -0.14 -3.04 7.02 71.98 0.51 -2.54 16 9 C 0.54 16.90 6.59 87.66 0.58 17.48 16 10 O -0.58 -22.22 15.52 -3.04 -0.05 -22.27 16 11 N -0.61 -18.94 3.28 -803.42 -2.64 -21.57 16 12 C 0.13 3.88 3.87 86.14 0.33 4.22 16 13 C -0.09 -2.75 1.06 -50.77 -0.05 -2.80 16 14 C -0.12 -2.97 7.45 71.98 0.54 -2.43 16 15 C 0.15 6.72 5.17 86.50 0.45 7.16 16 16 N -0.62 -29.46 3.39 -695.48 -2.36 -31.82 16 17 C -0.23 -12.44 10.34 84.03 0.87 -11.58 16 18 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 19 C -0.06 -2.98 5.49 84.86 0.47 -2.52 16 20 N -0.94 -51.72 10.08 21.65 0.22 -51.50 16 21 Si 0.97 43.85 29.55 68.60 2.03 45.87 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 C 0.14 5.45 6.17 86.50 0.53 5.98 16 26 C -0.07 -2.33 1.08 -50.76 -0.05 -2.39 16 27 C -0.12 -2.92 7.53 71.98 0.54 -2.38 16 28 C 0.13 4.21 6.16 86.53 0.53 4.74 16 29 H 0.08 1.36 6.66 -2.39 -0.02 1.35 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.42 6.88 -2.38 -0.02 1.41 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16 33 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.11 1.68 7.87 -2.39 -0.02 1.66 16 35 H 0.09 1.72 5.85 -2.39 -0.01 1.71 16 36 H 0.06 1.51 5.12 -2.39 -0.01 1.50 16 37 H 0.10 1.60 6.72 -2.39 -0.02 1.59 16 38 H 0.06 1.35 6.84 -2.39 -0.02 1.34 16 39 H 0.06 2.10 7.36 -2.39 -0.02 2.08 16 40 H 0.11 2.62 4.64 -2.39 -0.01 2.61 16 41 H 0.06 1.51 7.06 -2.39 -0.02 1.50 16 42 H 0.07 1.44 6.51 -2.39 -0.02 1.43 16 43 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.10 4.95 4.87 -2.39 -0.01 4.94 16 45 H -0.01 -0.63 7.88 -2.38 -0.02 -0.65 16 46 H 0.25 13.38 8.31 -92.71 -0.77 12.61 16 47 H 0.02 0.91 7.88 -2.39 -0.02 0.89 16 48 H 0.04 1.57 7.59 -2.39 -0.02 1.55 16 49 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.06 1.47 7.19 -2.39 -0.02 1.45 16 51 H 0.07 1.63 7.06 -2.39 -0.02 1.61 16 52 H 0.08 2.49 7.66 -2.38 -0.02 2.47 16 53 H 0.05 1.99 7.53 -2.39 -0.02 1.97 16 Total: -1.00 -64.68 380.17 3.09 -61.59 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.91 Total: 21.58 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 6.64 Total: 9.26 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -4.77 Total: -104.89 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -1.71 Total: -33.41 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -64.68 3.09 -61.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982403009.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.034 kcal (2) G-P(sol) polarization free energy of solvation -64.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds