Wall clock time and date at job start Tue Mar 31 2020 20:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.32760 * 2 1 4 4 C 1.54480 * 110.37358 * 122.24839 * 2 1 3 5 5 C 1.54510 * 104.06296 * 142.81293 * 4 2 1 6 6 C 1.54489 * 104.06276 * 0.02562 * 5 4 2 7 7 H 1.09000 * 110.36820 * 94.96224 * 6 5 4 8 8 C 1.52992 * 110.37298 * 217.19147 * 6 5 4 9 9 C 1.50696 * 109.47436 * 185.00079 * 8 6 5 10 10 O 1.21288 * 119.99604 * 359.97438 * 9 8 6 11 11 N 1.34770 * 120.00402 * 179.97438 * 9 8 6 12 12 C 1.48115 * 127.84762 * 179.97438 * 11 9 8 13 13 C 1.54311 * 104.71728 * 140.25957 * 12 11 9 14 14 C 1.52999 * 112.91944 * 146.34967 * 13 12 11 15 15 C 1.53762 * 109.07853 * 271.64475 * 13 12 11 16 16 N 1.47199 * 106.41067 * 130.77693 * 15 13 12 17 17 C 1.36938 * 126.70555 * 148.93404 * 16 15 13 18 18 H 1.07993 * 120.00384 * 179.68872 * 17 16 15 19 19 C 1.38814 * 119.99498 * 359.68977 * 17 16 15 20 20 N 1.31619 * 120.00256 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99612 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47210 * 60.00214 * 21 19 17 23 23 H 1.48505 * 109.46871 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46918 * 299.99954 * 21 19 17 25 25 C 1.47206 * 106.59093 * 328.67496 * 16 15 13 26 26 C 1.53761 * 106.40685 * 31.33344 * 25 16 15 27 27 C 1.52997 * 112.06581 * 103.40594 * 26 25 16 28 28 C 1.48110 * 127.84820 * 0.04403 * 11 9 8 29 29 O 1.44426 * 110.37437 * 237.63292 * 2 1 3 30 30 H 1.08993 * 109.47384 * 297.74631 * 1 2 3 31 31 H 1.08996 * 109.47530 * 57.75276 * 1 2 3 32 32 H 1.09005 * 109.46994 * 177.74779 * 1 2 3 33 33 H 1.09005 * 110.51124 * 24.16844 * 4 2 1 34 34 H 1.08995 * 110.51562 * 261.45669 * 4 2 1 35 35 H 1.08997 * 110.51516 * 241.35842 * 5 4 2 36 36 H 1.08997 * 110.51033 * 118.64502 * 5 4 2 37 37 H 1.09000 * 109.47356 * 64.99966 * 8 6 5 38 38 H 1.09007 * 109.47408 * 305.00166 * 8 6 5 39 39 H 1.09002 * 110.38660 * 21.45057 * 12 11 9 40 40 H 1.08998 * 110.48690 * 259.12195 * 12 11 9 41 41 H 1.09001 * 109.46573 * 301.83449 * 14 13 12 42 42 H 1.08995 * 109.47620 * 61.83666 * 14 13 12 43 43 H 1.09000 * 109.46902 * 181.83877 * 14 13 12 44 44 H 1.09004 * 110.06776 * 11.53742 * 15 13 12 45 45 H 1.09004 * 110.07126 * 250.01862 * 15 13 12 46 46 H 0.96999 * 119.99641 * 180.02562 * 20 19 17 47 47 H 1.08998 * 110.06615 * 150.56916 * 25 16 15 48 48 H 1.09002 * 110.06933 * 272.09648 * 25 16 15 49 49 H 1.09003 * 109.47686 * 61.01099 * 27 26 25 50 50 H 1.09004 * 109.47125 * 181.01617 * 27 26 25 51 51 H 1.09002 * 109.47017 * 301.01054 * 27 26 25 52 52 H 1.09001 * 110.39179 * 100.93296 * 28 11 9 53 53 H 1.09007 * 110.38432 * 338.55930 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0678 -0.7727 1.2248 5 6 3.3178 -1.5049 0.6875 6 6 3.3878 -1.0873 -0.7983 7 1 4.0546 -0.2339 -0.9215 8 6 3.8606 -2.2602 -1.6594 9 6 4.0392 -1.7984 -3.0827 10 8 3.8104 -0.6448 -3.3792 11 7 4.4533 -2.6672 -4.0261 12 6 4.6846 -2.4040 -5.4652 13 6 5.9602 -3.2012 -5.8095 14 6 5.9502 -3.7546 -7.2358 15 6 7.1914 -2.3203 -5.5403 16 7 8.1179 -3.1347 -4.7372 17 6 9.4855 -3.0656 -4.7447 18 1 10.0626 -3.7154 -4.1037 19 6 10.1300 -2.1601 -5.5764 20 7 9.4267 -1.3677 -6.3573 21 14 11.9957 -2.0653 -5.5862 22 1 12.5561 -3.3812 -5.9857 23 1 12.4334 -1.0263 -6.5527 24 1 12.4805 -1.7126 -4.2275 25 6 7.2869 -4.0336 -3.9196 26 6 6.0231 -4.3270 -4.7448 27 6 6.0603 -5.7194 -5.3778 28 6 4.7789 -4.1025 -3.8597 29 8 2.0328 -0.7248 -1.1436 30 1 -0.3634 0.4784 0.9094 31 1 -0.3634 0.5483 -0.8691 32 1 -0.3633 -1.0269 -0.0404 33 1 1.3276 -1.4903 1.5788 34 1 2.3429 -0.0819 2.0216 35 1 3.1957 -2.5844 0.7758 36 1 4.2109 -1.1759 1.2187 37 1 3.1181 -3.0575 -1.6266 38 1 4.8107 -2.6325 -1.2763 39 1 4.8446 -1.3394 -5.6356 40 1 3.8424 -2.7603 -6.0584 41 1 5.0798 -4.3968 -7.3702 42 1 5.9056 -2.9288 -7.9457 43 1 6.8582 -4.3327 -7.4076 44 1 6.8993 -1.4289 -4.9851 45 1 7.6620 -2.0374 -6.4819 46 1 9.8772 -0.7353 -6.9387 47 1 7.8250 -4.9597 -3.7176 48 1 7.0172 -3.5452 -2.9832 49 1 6.1186 -6.4738 -4.5933 50 1 5.1558 -5.8756 -5.9657 51 1 6.9332 -5.8007 -6.0257 52 1 3.9509 -4.7222 -4.2038 53 1 5.0100 -4.3209 -2.8170 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982511720.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:11 Heat of formation + Delta-G solvation = -75.060357 kcal Electronic energy + Delta-G solvation = -31309.577726 eV Core-core repulsion = 27373.816657 eV Total energy + Delta-G solvation = -3935.761068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.84301 -40.69555 -39.45364 -36.55353 -34.53249 -33.88740 -33.17059 -33.05067 -32.41298 -30.38725 -28.43522 -27.49539 -26.93196 -26.45314 -25.17948 -23.87299 -22.52296 -21.72991 -21.58539 -20.37079 -19.25200 -18.79076 -18.01031 -17.32357 -17.14913 -16.82995 -16.52358 -16.43894 -15.72141 -15.60196 -15.52615 -14.96674 -14.87317 -14.65795 -14.51511 -14.19159 -13.90555 -13.55376 -13.42460 -13.29207 -13.23470 -13.04204 -12.98583 -12.89343 -12.80069 -12.68051 -12.53978 -12.53312 -12.49713 -12.15803 -12.05981 -11.96999 -11.76339 -11.73303 -11.49917 -11.38556 -11.17465 -10.99135 -10.83788 -10.76950 -10.68945 -9.66488 -8.90373 -7.73737 -5.22570 1.44243 1.47651 1.54012 1.66039 2.00220 2.48509 2.87142 3.31481 3.39258 3.54730 3.61719 3.63656 3.82087 3.92994 3.98242 4.00011 4.03898 4.17750 4.22313 4.35856 4.37919 4.42410 4.47886 4.49657 4.55212 4.57503 4.63763 4.74327 4.75563 4.79383 4.86413 4.90083 4.93226 4.94902 4.96460 5.05244 5.09747 5.15164 5.16357 5.21023 5.25440 5.27260 5.28538 5.34476 5.46703 5.48679 5.56162 5.70100 5.88183 6.00458 6.37501 6.64050 7.09856 7.19135 7.78775 8.46848 9.24200 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.003118 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.987582 B = 8977.807240 C = 9755.189918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.053 3.947 3 H 0.054 0.946 4 C -0.142 4.142 5 C -0.144 4.144 6 C 0.085 3.915 7 H 0.043 0.957 8 C -0.120 4.120 9 C 0.523 3.477 10 O -0.590 6.590 11 N -0.621 5.621 12 C 0.122 3.878 13 C -0.084 4.084 14 C -0.109 4.109 15 C 0.158 3.842 16 N -0.616 5.616 17 C -0.231 4.231 18 H 0.085 0.915 19 C -0.071 4.071 20 N -0.949 5.949 21 Si 0.980 3.020 22 H -0.272 1.272 23 H -0.297 1.297 24 H -0.281 1.281 25 C 0.140 3.860 26 C -0.077 4.077 27 C -0.115 4.115 28 C 0.117 3.883 29 O -0.387 6.387 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.039 0.961 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.042 0.958 43 H 0.048 0.952 44 H -0.046 1.046 45 H 0.089 0.911 46 H 0.245 0.755 47 H 0.052 0.948 48 H 0.009 0.991 49 H 0.076 0.924 50 H 0.080 0.920 51 H 0.044 0.956 52 H 0.107 0.893 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.182 -9.118 12.617 23.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.005 4.005 3 H 0.072 0.928 4 C -0.180 4.180 5 C -0.181 4.181 6 C 0.027 3.973 7 H 0.061 0.939 8 C -0.159 4.159 9 C 0.314 3.686 10 O -0.471 6.471 11 N -0.354 5.354 12 C -0.002 4.002 13 C -0.086 4.086 14 C -0.166 4.166 15 C 0.033 3.967 16 N -0.339 5.339 17 C -0.360 4.360 18 H 0.102 0.898 19 C -0.263 4.263 20 N -0.599 5.599 21 Si 0.808 3.192 22 H -0.197 1.197 23 H -0.224 1.224 24 H -0.208 1.208 25 C 0.014 3.986 26 C -0.079 4.079 27 C -0.172 4.172 28 C -0.005 4.005 29 O -0.308 6.308 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.106 0.894 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.058 0.942 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.067 0.933 44 H -0.028 1.028 45 H 0.107 0.893 46 H 0.054 0.946 47 H 0.070 0.930 48 H 0.026 0.974 49 H 0.094 0.906 50 H 0.099 0.901 51 H 0.063 0.937 52 H 0.125 0.875 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.255 -8.383 12.283 22.779 hybrid contribution 1.621 1.313 -0.290 2.106 sum -15.634 -7.070 11.993 20.934 Atomic orbital electron populations 1.21780 0.91987 1.03066 1.02876 1.23203 0.96418 0.95282 0.85570 0.92786 1.22985 0.97509 1.00012 0.97444 1.23001 0.99534 1.02868 0.92742 1.22708 0.84555 0.95454 0.94574 0.93937 1.21785 1.05258 0.99774 0.89084 1.20960 0.75427 0.84211 0.88026 1.90682 1.53183 1.20254 1.82957 1.49005 1.65515 1.12020 1.08831 1.22248 0.97058 0.99013 0.81845 1.22365 0.94002 0.95540 0.96718 1.21514 1.02107 1.00283 0.92740 1.21671 0.88310 0.89572 0.97192 1.44765 1.01332 1.41532 1.46280 1.19435 0.81574 1.16330 1.18676 0.89770 1.25638 1.02500 0.98623 0.99504 1.69921 1.34192 1.26234 1.29578 0.85123 0.79713 0.77314 0.77011 1.19735 1.22357 1.20772 1.21633 0.91277 0.93118 0.92533 1.22324 0.94411 0.96357 0.94778 1.21600 1.02350 0.92504 1.00765 1.22678 0.96617 0.79842 1.01391 1.89205 1.26909 1.74701 1.39937 0.88907 0.93271 0.91519 0.88913 0.89191 0.88334 0.89391 0.85417 0.85772 0.94229 0.89000 0.89457 0.93845 0.93316 1.02814 0.89346 0.94551 0.92972 0.97363 0.90555 0.90076 0.93727 0.87494 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.52 71.98 0.69 -1.64 16 2 C 0.05 1.12 3.92 31.10 0.12 1.24 16 3 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.14 -2.08 6.63 31.61 0.21 -1.87 16 5 C -0.14 -2.35 6.63 31.61 0.21 -2.14 16 6 C 0.09 2.21 2.74 31.10 0.09 2.30 16 7 H 0.04 1.36 7.91 -2.39 -0.02 1.34 16 8 C -0.12 -2.92 4.30 29.84 0.13 -2.79 16 9 C 0.52 18.62 7.84 87.66 0.69 19.31 16 10 O -0.59 -27.17 15.88 3.21 0.05 -27.12 16 11 N -0.62 -20.26 3.31 -808.38 -2.68 -22.94 16 12 C 0.12 4.33 5.92 86.51 0.51 4.84 16 13 C -0.08 -3.09 1.08 -50.77 -0.05 -3.15 16 14 C -0.11 -3.50 7.53 71.98 0.54 -2.96 16 15 C 0.16 8.15 5.36 86.50 0.46 8.61 16 16 N -0.62 -31.80 3.39 -695.46 -2.36 -34.16 16 17 C -0.23 -12.99 10.34 84.03 0.87 -12.12 16 18 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 19 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 20 N -0.95 -58.35 10.08 21.65 0.22 -58.13 16 21 Si 0.98 46.38 29.55 68.60 2.03 48.40 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 25 C 0.14 5.47 6.37 86.50 0.55 6.02 16 26 C -0.08 -2.31 1.08 -50.76 -0.05 -2.36 16 27 C -0.11 -2.66 7.53 71.98 0.54 -2.12 16 28 C 0.12 2.77 5.79 86.52 0.50 3.27 16 29 O -0.39 -11.41 10.61 -142.72 -1.51 -12.92 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.09 1.06 7.87 -2.38 -0.02 1.04 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.10 1.21 7.87 -2.39 -0.02 1.19 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.12 2.54 7.95 -2.38 -0.02 2.52 16 39 H 0.04 1.72 7.39 -2.39 -0.02 1.71 16 40 H 0.09 2.68 7.99 -2.39 -0.02 2.66 16 41 H 0.09 2.06 7.15 -2.39 -0.02 2.04 16 42 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.05 1.72 7.10 -2.39 -0.02 1.71 16 44 H -0.05 -2.77 7.45 -2.38 -0.02 -2.78 16 45 H 0.09 5.20 5.13 -2.38 -0.01 5.19 16 46 H 0.24 14.73 8.31 -92.71 -0.77 13.96 16 47 H 0.05 1.91 7.83 -2.39 -0.02 1.89 16 48 H 0.01 0.34 7.46 -2.39 -0.02 0.32 16 49 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.08 1.45 7.17 -2.39 -0.02 1.44 16 51 H 0.04 1.26 7.08 -2.39 -0.02 1.24 16 52 H 0.11 1.82 7.99 -2.39 -0.02 1.80 16 53 H 0.10 1.92 6.82 -2.38 -0.02 1.90 16 Total: -1.00 -81.16 399.82 3.08 -78.08 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.87 Total: 17.96 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 6.46 Total: 10.84 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -4.82 Total: -115.23 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -1.46 Total: -40.04 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -81.16 3.08 -78.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982511720.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.017 kcal (2) G-P(sol) polarization free energy of solvation -81.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds