Wall clock time and date at job start Tue Mar 31 2020 20:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 110.41651 * 2 1 4 4 C 1.54478 * 110.36937 * 237.69217 * 2 1 3 5 5 C 1.54685 * 104.07698 * 217.10092 * 4 2 1 6 6 C 1.54481 * 103.98158 * 0.13387 * 5 4 2 7 7 H 1.08993 * 110.37323 * 264.97037 * 6 5 4 8 8 C 1.52998 * 110.37269 * 142.73788 * 6 5 4 9 9 C 1.50701 * 109.47005 * 176.55090 * 8 6 5 10 10 O 1.21274 * 119.99768 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99606 * 180.02562 * 9 8 6 12 12 C 1.48114 * 127.84099 * 180.02562 * 11 9 8 13 13 C 1.54315 * 104.71741 * 140.22145 * 12 11 9 14 14 C 1.52992 * 112.07404 * 146.94115 * 13 12 11 15 15 C 1.53760 * 109.07863 * 271.63795 * 13 12 11 16 16 N 1.47205 * 106.40727 * 93.19624 * 15 13 12 17 17 C 1.36936 * 126.70311 * 211.29486 * 16 15 13 18 18 H 1.08006 * 119.99721 * 165.67704 * 17 16 15 19 19 C 1.38804 * 119.99977 * 345.67492 * 17 16 15 20 20 N 1.31622 * 120.00247 * 350.71804 * 19 17 16 21 21 Si 1.86810 * 119.99877 * 170.71758 * 19 17 16 22 22 H 1.48499 * 109.47137 * 59.99982 * 21 19 17 23 23 H 1.48496 * 109.47053 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46625 * 300.00079 * 21 19 17 25 25 C 1.47201 * 106.59140 * 31.55839 * 16 15 13 26 26 C 1.54044 * 106.26781 * 328.37076 * 25 16 15 27 27 C 1.52994 * 112.77199 * 141.67393 * 26 25 16 28 28 C 1.48109 * 127.84692 * 359.97438 * 11 9 8 29 29 O 1.44424 * 104.89620 * 23.85478 * 6 5 4 30 30 H 1.09004 * 109.47048 * 299.14377 * 1 2 3 31 31 H 1.08999 * 109.47135 * 59.13930 * 1 2 3 32 32 H 1.09004 * 109.46982 * 179.14262 * 1 2 3 33 33 H 1.09003 * 110.51206 * 335.83181 * 4 2 1 34 34 H 1.08993 * 110.51294 * 98.40858 * 4 2 1 35 35 H 1.09005 * 110.61187 * 241.48530 * 5 4 2 36 36 H 1.09001 * 110.49229 * 118.72742 * 5 4 2 37 37 H 1.09000 * 109.46913 * 56.55017 * 8 6 5 38 38 H 1.08998 * 109.46970 * 296.55426 * 8 6 5 39 39 H 1.09001 * 110.39063 * 21.40405 * 12 11 9 40 40 H 1.08999 * 110.47996 * 259.07727 * 12 11 9 41 41 H 1.09000 * 109.46929 * 182.01048 * 14 13 12 42 42 H 1.09002 * 109.47436 * 302.00660 * 14 13 12 43 43 H 1.08995 * 109.47508 * 62.01567 * 14 13 12 44 44 H 1.09007 * 110.06778 * 333.96540 * 15 13 12 45 45 H 1.08997 * 110.06663 * 212.43953 * 15 13 12 46 46 H 0.97001 * 120.00021 * 180.02562 * 20 19 17 47 47 H 1.09000 * 110.07074 * 87.68163 * 25 16 15 48 48 H 1.09001 * 110.06999 * 209.20888 * 25 16 15 49 49 H 1.09004 * 109.47277 * 301.38712 * 27 26 25 50 50 H 1.08998 * 109.47463 * 61.38087 * 27 26 25 51 51 H 1.09001 * 109.47710 * 181.38298 * 27 26 25 52 52 H 1.09001 * 110.39214 * 338.59906 * 28 11 9 53 53 H 1.09002 * 110.38465 * 100.86537 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0678 -0.7740 -1.2240 5 6 3.3206 -1.5048 -0.6863 6 6 3.3874 -1.0872 0.7995 7 1 4.0528 -0.2330 0.9239 8 6 3.8601 -2.2595 1.6615 9 6 3.9991 -1.8069 3.0922 10 8 3.7446 -0.6599 3.3928 11 7 4.4062 -2.6770 4.0376 12 6 4.6008 -2.4222 5.4836 13 6 4.0659 -3.6909 6.1807 14 6 4.8402 -4.0136 7.4601 15 6 2.5603 -3.5231 6.4434 16 7 1.8678 -4.1207 5.2900 17 6 0.6647 -3.7302 4.7654 18 1 0.3616 -4.0812 3.7900 19 6 -0.1651 -2.8835 5.4872 20 7 0.1133 -2.6018 6.7425 21 14 -1.6771 -2.1436 4.6771 22 1 -2.5803 -3.2329 4.2266 23 1 -2.3897 -1.2811 5.6535 24 1 -1.2628 -1.3284 3.5071 25 6 2.7183 -5.2242 4.8147 26 6 4.1716 -4.8063 5.1085 27 6 5.0412 -5.9754 5.5750 28 6 4.7596 -4.1051 3.8667 29 8 2.0328 -0.7238 1.1442 30 1 -0.3633 0.5005 0.8976 31 1 -0.3633 0.5271 -0.8822 32 1 -0.3633 -1.0276 -0.0154 33 1 1.3275 -1.4919 -1.5772 34 1 2.3406 -0.0841 -2.0224 35 1 4.2142 -1.1751 -1.2163 36 1 3.1997 -2.5845 -0.7745 37 1 4.8246 -2.6129 1.2968 38 1 3.1319 -3.0686 1.6054 39 1 4.0294 -1.5479 5.7955 40 1 5.6585 -2.2832 5.7075 41 1 4.4522 -4.9337 7.8972 42 1 5.8965 -4.1412 7.2233 43 1 4.7234 -3.1961 8.1715 44 1 2.3100 -2.4651 6.5227 45 1 2.2801 -4.0439 7.3589 46 1 -0.4669 -2.0104 7.2470 47 1 2.4749 -6.1416 5.3506 48 1 2.5799 -5.3684 3.7432 49 1 4.6104 -6.4118 6.4762 50 1 5.0851 -6.7312 4.7908 51 1 6.0476 -5.6165 5.7904 52 1 4.3081 -4.5018 2.9573 53 1 5.8423 -4.2274 3.8368 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982511722.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:16 Heat of formation + Delta-G solvation = -78.518189 kcal Electronic energy + Delta-G solvation = -32357.279439 eV Core-core repulsion = 28421.368428 eV Total energy + Delta-G solvation = -3935.911011 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.78595 -40.66885 -39.37485 -36.38719 -34.57383 -33.86734 -33.17691 -33.06084 -32.49444 -30.39072 -28.22393 -27.50299 -26.87145 -26.52276 -25.15445 -23.90054 -22.53648 -21.72696 -21.58308 -20.35474 -19.20530 -18.77044 -17.94896 -17.23287 -17.19214 -16.84469 -16.67327 -16.42264 -15.66301 -15.57950 -15.32050 -14.84895 -14.77751 -14.64088 -14.41188 -14.26608 -14.02387 -13.77908 -13.54816 -13.37026 -13.25260 -13.00786 -12.92946 -12.87439 -12.80237 -12.72169 -12.54990 -12.50558 -12.45459 -12.16908 -12.02909 -11.96895 -11.79069 -11.76059 -11.50572 -11.45201 -11.13131 -11.08058 -10.76248 -10.69367 -10.65753 -9.56379 -8.80351 -7.93173 -5.24242 1.30611 1.39113 1.43498 1.75050 2.15431 2.43526 2.92939 3.27882 3.42154 3.58884 3.61983 3.71076 3.73845 3.91209 3.91864 4.02138 4.03027 4.20944 4.23973 4.34171 4.39772 4.44039 4.46996 4.52199 4.55854 4.63130 4.64909 4.74501 4.78395 4.83996 4.86284 4.89627 4.92469 4.92920 4.98806 5.00887 5.11276 5.12291 5.18968 5.19448 5.23716 5.25745 5.34120 5.35595 5.45536 5.47126 5.53286 5.66045 5.82666 6.09356 6.20630 6.75316 7.05571 7.32159 7.76096 8.46121 9.19613 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009713 B = 0.005588 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.098504 B = 5009.565956 C = 6922.512732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 H 0.064 0.936 4 C -0.141 4.141 5 C -0.138 4.138 6 C 0.083 3.917 7 H 0.059 0.941 8 C -0.119 4.119 9 C 0.526 3.474 10 O -0.594 6.594 11 N -0.615 5.615 12 C 0.125 3.875 13 C -0.088 4.088 14 C -0.115 4.115 15 C 0.193 3.807 16 N -0.609 5.609 17 C -0.222 4.222 18 H 0.070 0.930 19 C -0.061 4.061 20 N -0.945 5.945 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.295 1.295 24 H -0.292 1.292 25 C 0.139 3.861 26 C -0.075 4.075 27 C -0.116 4.116 28 C 0.117 3.883 29 O -0.400 6.400 30 H 0.033 0.967 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.147 0.853 38 H 0.095 0.905 39 H 0.026 0.974 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.045 0.955 44 H 0.018 0.982 45 H -0.012 1.012 46 H 0.243 0.757 47 H 0.016 0.984 48 H 0.044 0.956 49 H 0.055 0.945 50 H 0.076 0.924 51 H 0.085 0.915 52 H 0.086 0.914 53 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.558 -4.854 -14.325 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.004 4.004 3 H 0.082 0.918 4 C -0.178 4.178 5 C -0.176 4.176 6 C 0.025 3.975 7 H 0.077 0.923 8 C -0.158 4.158 9 C 0.317 3.683 10 O -0.475 6.475 11 N -0.347 5.347 12 C 0.002 3.998 13 C -0.091 4.091 14 C -0.172 4.172 15 C 0.067 3.933 16 N -0.332 5.332 17 C -0.352 4.352 18 H 0.088 0.912 19 C -0.254 4.254 20 N -0.594 5.594 21 Si 0.788 3.212 22 H -0.192 1.192 23 H -0.221 1.221 24 H -0.219 1.219 25 C 0.014 3.986 26 C -0.077 4.077 27 C -0.174 4.174 28 C -0.005 4.005 29 O -0.320 6.320 30 H 0.052 0.948 31 H 0.120 0.880 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.108 0.892 37 H 0.164 0.836 38 H 0.114 0.886 39 H 0.044 0.956 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.111 0.889 43 H 0.064 0.936 44 H 0.036 0.964 45 H 0.006 0.994 46 H 0.053 0.947 47 H 0.034 0.966 48 H 0.063 0.937 49 H 0.074 0.926 50 H 0.095 0.905 51 H 0.104 0.896 52 H 0.104 0.896 53 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.062 -4.114 -14.035 20.994 hybrid contribution -1.872 1.134 0.430 2.231 sum 13.189 -2.980 -13.604 19.181 Atomic orbital electron populations 1.21824 0.93673 1.02424 1.02345 1.23197 0.95396 0.95808 0.86031 0.91828 1.23004 0.97679 0.99949 0.97181 1.23022 0.99588 1.02334 0.92647 1.22834 0.84359 0.95751 0.94581 0.92299 1.21774 1.05269 0.99242 0.89514 1.20824 0.74809 0.84293 0.88374 1.90659 1.51840 1.21562 1.83402 1.48833 1.65667 1.12252 1.07932 1.22273 0.99997 0.96815 0.80753 1.22451 0.95692 0.94338 0.96573 1.21576 1.00307 1.01309 0.94022 1.20923 0.88254 0.95814 0.88335 1.44510 1.19766 1.34299 1.34652 1.19104 0.93494 1.24084 0.98493 0.91198 1.25493 1.01294 1.02533 0.96097 1.70105 1.40126 1.40617 1.08586 0.85434 0.80108 0.78516 0.77158 1.19158 1.22093 1.21876 1.21664 0.89880 0.89959 0.97145 1.22359 0.95242 0.95780 0.94285 1.21618 0.98918 0.95288 1.01532 1.22701 1.01112 0.78453 0.98195 1.89370 1.27950 1.74827 1.39862 0.94791 0.87994 0.92752 0.90035 0.88072 0.87572 0.89228 0.83555 0.88642 0.95552 0.88726 0.91947 0.88887 0.93566 0.96376 0.99388 0.94747 0.96602 0.93723 0.92638 0.90548 0.89603 0.89569 0.87117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 9.52 71.98 0.69 -3.50 16 2 C 0.05 1.56 3.92 31.10 0.12 1.68 16 3 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 4 C -0.14 -2.78 6.64 31.67 0.21 -2.57 16 5 C -0.14 -2.63 6.65 31.67 0.21 -2.42 16 6 C 0.08 2.48 2.75 31.10 0.09 2.56 16 7 H 0.06 1.86 7.96 -2.39 -0.02 1.84 16 8 C -0.12 -3.44 4.31 29.85 0.13 -3.31 16 9 C 0.53 21.16 7.83 87.66 0.69 21.84 16 10 O -0.59 -30.47 15.84 6.02 0.10 -30.38 16 11 N -0.61 -21.88 3.31 -808.53 -2.68 -24.56 16 12 C 0.12 4.62 6.05 86.52 0.52 5.15 16 13 C -0.09 -3.14 1.08 -50.77 -0.05 -3.19 16 14 C -0.11 -3.10 7.54 71.98 0.54 -2.56 16 15 C 0.19 9.90 4.68 86.50 0.41 10.31 16 16 N -0.61 -32.23 3.38 -694.92 -2.35 -34.58 16 17 C -0.22 -13.35 10.28 84.03 0.86 -12.48 16 18 H 0.07 4.09 7.85 -2.91 -0.02 4.07 16 19 C -0.06 -3.80 5.38 84.86 0.46 -3.34 16 20 N -0.95 -62.05 10.87 21.65 0.24 -61.81 16 21 Si 0.96 51.40 29.56 68.60 2.03 53.42 16 22 H -0.27 -13.24 7.11 99.48 0.71 -12.54 16 23 H -0.29 -15.79 7.11 99.48 0.71 -15.09 16 24 H -0.29 -16.06 7.11 99.48 0.71 -15.35 16 25 C 0.14 5.49 6.34 86.60 0.55 6.04 16 26 C -0.07 -2.17 1.08 -50.69 -0.05 -2.23 16 27 C -0.12 -2.21 7.59 71.98 0.55 -1.67 16 28 C 0.12 2.94 5.93 86.50 0.51 3.46 16 29 O -0.40 -16.08 10.51 -139.95 -1.47 -17.55 16 30 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.05 1.63 8.12 -2.39 -0.02 1.61 16 33 H 0.08 1.52 7.86 -2.39 -0.02 1.50 16 34 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.09 1.49 7.87 -2.39 -0.02 1.47 16 37 H 0.15 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.10 2.90 7.95 -2.39 -0.02 2.88 16 39 H 0.03 1.24 7.16 -2.39 -0.02 1.23 16 40 H 0.09 2.75 7.97 -2.39 -0.02 2.73 16 41 H 0.06 1.67 7.20 -2.39 -0.02 1.65 16 42 H 0.09 1.77 7.21 -2.39 -0.02 1.75 16 43 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.02 1.11 6.04 -2.38 -0.01 1.10 16 45 H -0.01 -0.66 7.89 -2.39 -0.02 -0.68 16 46 H 0.24 15.71 8.31 -92.71 -0.77 14.94 16 47 H 0.02 0.64 7.93 -2.39 -0.02 0.63 16 48 H 0.04 1.69 7.40 -2.39 -0.02 1.67 16 49 H 0.05 1.17 7.18 -2.39 -0.02 1.15 16 50 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.09 1.19 7.21 -2.39 -0.02 1.17 16 52 H 0.09 1.97 6.60 -2.39 -0.02 1.96 16 53 H 0.11 1.85 7.96 -2.39 -0.02 1.83 16 Total: -1.00 -90.48 401.19 3.14 -87.33 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.87 Total: 14.35 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 6.42 Total: 13.76 kcal Atomic # 7 Polarization: -116.16 SS G_CDS: -4.80 Total: -120.95 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -1.38 Total: -47.92 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 2.03 Total: 53.42 kcal Total: -90.48 3.14 -87.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982511722.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.817 kcal (2) G-P(sol) polarization free energy of solvation -90.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds