Wall clock time and date at job start Tue Mar 31 2020 21:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.48276 * 2 1 4 4 C 1.53092 * 109.47864 * 120.03009 * 2 1 3 5 5 C 1.53176 * 109.16396 * 177.59134 * 4 2 1 6 6 H 1.08996 * 109.62077 * 183.11011 * 5 4 2 7 7 C 1.50704 * 109.54394 * 62.88891 * 5 4 2 8 8 O 1.21281 * 119.99864 * 0.43920 * 7 5 4 9 9 N 1.34770 * 120.00360 * 180.44666 * 7 5 4 10 10 C 1.48108 * 127.84965 * 179.97438 * 9 7 5 11 11 C 1.54319 * 104.71494 * 140.23946 * 10 9 7 12 12 C 1.53002 * 112.07442 * 145.86688 * 11 10 9 13 13 C 1.53762 * 109.07955 * 271.64699 * 11 10 9 14 14 N 1.47199 * 106.41067 * 130.77906 * 13 11 10 15 15 C 1.36938 * 126.70555 * 148.93404 * 14 13 11 16 16 H 1.07993 * 120.00384 * 179.68872 * 15 14 13 17 17 C 1.38814 * 119.99498 * 359.68977 * 15 14 13 18 18 N 1.31610 * 120.00434 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99612 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46943 * 90.00089 * 19 17 15 21 21 H 1.48500 * 109.47253 * 209.99903 * 19 17 15 22 22 H 1.48495 * 109.47334 * 330.00324 * 19 17 15 23 23 C 1.47206 * 106.59093 * 328.67496 * 14 13 11 24 24 C 1.53761 * 106.40685 * 31.33344 * 23 14 13 25 25 C 1.52997 * 112.06581 * 103.40594 * 24 23 14 26 26 C 1.50799 * 127.62615 * 0.20075 * 9 7 5 27 27 C 1.53179 * 109.03595 * 303.02069 * 5 4 2 28 28 C 1.53095 * 109.16405 * 56.98127 * 27 5 4 29 29 O 1.42897 * 109.48108 * 239.97402 * 2 1 3 30 30 H 1.08999 * 109.47562 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47459 * 300.02673 * 1 2 3 32 32 H 1.09000 * 109.46847 * 60.02717 * 1 2 3 33 33 H 1.08997 * 109.52067 * 57.68667 * 4 2 1 34 34 H 1.08999 * 109.52455 * 297.49847 * 4 2 1 35 35 H 1.09002 * 110.38447 * 21.43269 * 10 9 7 36 36 H 1.08991 * 110.48891 * 259.10013 * 10 9 7 37 37 H 1.08994 * 109.46734 * 302.41107 * 12 11 10 38 38 H 1.08997 * 109.47149 * 62.41557 * 12 11 10 39 39 H 1.09000 * 109.46799 * 182.41046 * 12 11 10 40 40 H 1.09004 * 110.06776 * 11.53954 * 13 11 10 41 41 H 1.09004 * 110.07126 * 250.02075 * 13 11 10 42 42 H 0.97000 * 120.00406 * 180.02562 * 18 17 15 43 43 H 1.08998 * 110.06615 * 150.56916 * 23 14 13 44 44 H 1.09002 * 110.06933 * 272.09648 * 23 14 13 45 45 H 1.08997 * 109.47161 * 61.01565 * 25 24 23 46 46 H 1.09004 * 109.47125 * 181.01617 * 25 24 23 47 47 H 1.09002 * 109.47017 * 301.01054 * 25 24 23 48 48 H 1.09003 * 110.67456 * 101.39970 * 26 9 7 49 49 H 1.09004 * 111.34412 * 338.16690 * 26 9 7 50 50 H 1.09006 * 109.52026 * 176.88446 * 27 5 4 51 51 H 1.08998 * 109.52443 * 297.01011 * 27 5 4 52 52 H 1.08994 * 109.47909 * 62.37173 * 28 27 5 53 53 H 1.09000 * 109.47823 * 182.39553 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7223 1.2496 5 6 3.5710 -0.7710 1.2122 6 1 3.9404 -1.3319 2.0706 7 6 4.1211 0.6315 1.2519 8 8 3.3651 1.5779 1.3130 9 7 5.4531 0.8342 1.2195 10 6 6.1768 2.1261 1.2490 11 6 7.3978 1.8708 2.1575 12 6 8.6269 2.6614 1.7045 13 6 7.0069 2.1565 3.6169 14 7 7.4529 0.9941 4.4021 15 6 7.8690 0.9986 5.7067 16 1 8.1699 0.0761 6.1808 17 6 7.9039 2.1890 6.4199 18 7 7.5366 3.3132 5.8424 19 14 8.4708 2.1951 8.1999 20 1 9.9392 2.4101 8.2509 21 1 7.7847 3.2884 8.9342 22 1 8.1392 0.8918 8.8294 23 6 7.3584 -0.1752 3.5128 24 6 7.6289 0.3389 2.0892 25 6 9.0388 -0.0118 1.6097 26 6 6.5410 -0.2070 1.1402 27 6 4.0175 -1.4601 -0.0809 28 6 3.4307 -0.7093 -1.2791 29 8 2.0065 -0.6741 -1.1664 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5142 0.8897 32 1 -0.3633 0.5134 -0.8902 33 1 1.6442 -1.7375 1.2709 34 1 1.7147 -0.1844 2.1399 35 1 5.5443 2.9060 1.6731 36 1 6.5010 2.4046 0.2464 37 1 8.8668 2.4008 0.6737 38 1 8.4166 3.7289 1.7699 39 1 9.4728 2.4177 2.3472 40 1 5.9260 2.2709 3.6990 41 1 7.5067 3.0593 3.9681 42 1 7.5614 4.1451 6.3407 43 1 8.1062 -0.9178 3.7908 44 1 6.3601 -0.6091 3.5704 45 1 9.1576 -1.0952 1.5921 46 1 9.1912 0.3867 0.6066 47 1 9.7722 0.4232 2.2887 48 1 6.9272 -0.2835 0.1237 49 1 6.1870 -1.1780 1.4868 50 1 5.1058 -1.4498 -0.1420 51 1 3.6622 -2.4905 -0.0859 52 1 3.8193 0.3089 -1.2957 53 1 3.7102 -1.2201 -2.2005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982683805.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:21 Heat of formation + Delta-G solvation = -72.441619 kcal Electronic energy + Delta-G solvation = -32308.211855 eV Core-core repulsion = 28372.564343 eV Total energy + Delta-G solvation = -3935.647511 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.07471 -40.87190 -38.94894 -36.55085 -34.99804 -34.33942 -33.63649 -32.99433 -32.44908 -28.93115 -28.50969 -27.76382 -26.97438 -26.49714 -25.25597 -24.17675 -23.30090 -22.21645 -21.54779 -19.92681 -19.26043 -18.73872 -17.69417 -17.28441 -17.14975 -16.84172 -16.70132 -16.35615 -15.79043 -15.60262 -15.53403 -15.02495 -14.94346 -14.81560 -14.52089 -14.28215 -13.68548 -13.60336 -13.47879 -13.39206 -13.35064 -13.21811 -13.09658 -12.91303 -12.85673 -12.77165 -12.72723 -12.52512 -12.49713 -12.09560 -12.05725 -11.97037 -11.78793 -11.70858 -11.47107 -11.38509 -11.19515 -10.99286 -10.81117 -10.77252 -10.26578 -9.69294 -8.91837 -7.75545 -5.24204 1.43695 1.45644 1.53954 1.59376 1.93050 2.47121 2.83672 3.27429 3.30539 3.53199 3.56210 3.66086 3.77400 3.89398 3.91444 3.94776 4.07467 4.16930 4.28263 4.34819 4.38380 4.40199 4.47994 4.53254 4.56469 4.65040 4.70337 4.72999 4.76163 4.79010 4.79681 4.84988 4.90673 4.93935 4.95112 5.01729 5.03369 5.08636 5.15151 5.20343 5.24773 5.27129 5.27199 5.33320 5.45259 5.47378 5.55015 5.69128 5.86790 6.28325 6.36275 6.57052 7.08717 7.13921 7.77366 8.44962 9.22494 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015858 B = 0.003604 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.299641 B = 7767.723984 C = 8499.381700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.075 3.925 3 H 0.050 0.950 4 C -0.126 4.126 5 C -0.106 4.106 6 H 0.108 0.892 7 C 0.528 3.472 8 O -0.589 6.589 9 N -0.619 5.619 10 C 0.123 3.877 11 C -0.082 4.082 12 C -0.110 4.110 13 C 0.159 3.841 14 N -0.616 5.616 15 C -0.232 4.232 16 H 0.083 0.917 17 C -0.068 4.068 18 N -0.948 5.948 19 Si 0.979 3.021 20 H -0.281 1.281 21 H -0.299 1.299 22 H -0.271 1.271 23 C 0.140 3.860 24 C -0.077 4.077 25 C -0.117 4.117 26 C 0.116 3.884 27 C -0.141 4.141 28 C 0.056 3.944 29 O -0.392 6.392 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.047 0.953 40 H -0.045 1.045 41 H 0.088 0.912 42 H 0.245 0.755 43 H 0.051 0.949 44 H 0.006 0.994 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.042 0.958 48 H 0.116 0.884 49 H 0.100 0.900 50 H 0.102 0.898 51 H 0.105 0.895 52 H 0.027 0.973 53 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.784 -12.193 -17.315 21.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.018 3.982 3 H 0.068 0.932 4 C -0.163 4.163 5 C -0.127 4.127 6 H 0.126 0.874 7 C 0.319 3.681 8 O -0.471 6.471 9 N -0.351 5.351 10 C 0.000 4.000 11 C -0.084 4.084 12 C -0.167 4.167 13 C 0.034 3.966 14 N -0.339 5.339 15 C -0.361 4.361 16 H 0.101 0.899 17 C -0.260 4.260 18 N -0.598 5.598 19 Si 0.807 3.193 20 H -0.208 1.208 21 H -0.226 1.226 22 H -0.196 1.196 23 C 0.014 3.986 24 C -0.079 4.079 25 C -0.174 4.174 26 C -0.005 4.005 27 C -0.178 4.178 28 C -0.020 4.020 29 O -0.312 6.312 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.062 0.938 39 H 0.066 0.934 40 H -0.027 1.027 41 H 0.106 0.894 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.023 0.977 45 H 0.094 0.906 46 H 0.102 0.898 47 H 0.061 0.939 48 H 0.134 0.866 49 H 0.118 0.882 50 H 0.120 0.880 51 H 0.123 0.877 52 H 0.046 0.954 53 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.389 -11.688 -17.202 21.071 hybrid contribution 0.049 1.045 2.060 2.310 sum -3.340 -10.643 -15.142 18.807 Atomic orbital electron populations 1.21722 0.91961 1.03300 1.02561 1.22268 0.96018 0.95327 0.84599 0.93197 1.21989 0.93133 1.02481 0.98747 1.21429 0.97205 0.91826 1.02244 0.87440 1.20861 0.80332 0.92185 0.74745 1.90625 1.57694 1.46014 1.52725 1.49604 1.04755 1.09385 1.71347 1.22276 0.91972 0.86127 0.99669 1.22348 0.95053 0.95828 0.95179 1.21525 0.95318 0.98429 1.01450 1.21638 0.92897 0.93938 0.88171 1.44756 1.75811 1.04162 1.09165 1.19466 1.35407 0.94181 0.87083 0.89891 1.25601 1.02623 0.95243 1.02535 1.69914 1.55267 0.98371 1.36279 0.85069 0.77697 0.77020 0.79503 1.20816 1.22554 1.19581 1.21628 0.96990 0.90126 0.89854 1.22314 0.97192 0.93778 0.94627 1.21637 0.92251 1.02130 1.01415 1.23295 0.85034 0.91384 1.00758 1.22325 1.03074 1.00897 0.91526 1.22705 0.80579 0.98992 0.99736 1.87853 1.21833 1.77983 1.43510 0.90784 0.90953 0.91939 0.88299 0.92148 0.94092 0.88720 0.89259 0.93805 0.93426 1.02742 0.89396 0.94522 0.93113 0.97670 0.90586 0.89817 0.93853 0.86648 0.88211 0.87983 0.87690 0.95445 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.56 71.98 0.69 -2.27 16 2 C 0.08 1.98 2.97 30.62 0.09 2.07 16 3 H 0.05 1.67 5.82 -2.38 -0.01 1.65 16 4 C -0.13 -3.09 4.56 30.68 0.14 -2.95 16 5 C -0.11 -2.55 2.39 -11.42 -0.03 -2.58 16 6 H 0.11 2.44 8.01 -2.39 -0.02 2.42 16 7 C 0.53 17.37 5.93 87.66 0.52 17.89 16 8 O -0.59 -24.55 14.12 -3.03 -0.04 -24.59 16 9 N -0.62 -18.65 3.35 -801.18 -2.69 -21.33 16 10 C 0.12 4.07 5.91 86.52 0.51 4.58 16 11 C -0.08 -2.88 1.08 -50.77 -0.05 -2.94 16 12 C -0.11 -3.35 7.53 71.98 0.54 -2.80 16 13 C 0.16 8.02 5.39 86.50 0.47 8.49 16 14 N -0.62 -31.42 3.39 -695.46 -2.36 -33.78 16 15 C -0.23 -12.99 10.34 84.03 0.87 -12.12 16 16 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 17 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16 18 N -0.95 -57.67 10.08 21.65 0.22 -57.46 16 19 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 21 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 C 0.14 5.39 6.36 86.50 0.55 5.94 16 24 C -0.08 -2.22 1.06 -50.76 -0.05 -2.27 16 25 C -0.12 -2.56 7.47 71.98 0.54 -2.02 16 26 C 0.12 2.52 4.17 85.99 0.36 2.88 16 27 C -0.14 -2.33 5.41 30.69 0.17 -2.16 16 28 C 0.06 1.11 6.62 72.01 0.48 1.58 16 29 O -0.39 -9.67 10.41 -148.98 -1.55 -11.22 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.10 1.93 8.14 -2.39 -0.02 1.92 16 34 H 0.06 1.71 8.02 -2.39 -0.02 1.69 16 35 H 0.04 1.68 7.39 -2.39 -0.02 1.67 16 36 H 0.09 2.50 7.96 -2.39 -0.02 2.48 16 37 H 0.09 1.94 7.16 -2.39 -0.02 1.92 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.05 1.62 7.09 -2.39 -0.02 1.60 16 40 H -0.05 -2.67 7.45 -2.38 -0.02 -2.68 16 41 H 0.09 5.09 5.16 -2.38 -0.01 5.08 16 42 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 43 H 0.05 1.85 7.83 -2.39 -0.02 1.83 16 44 H 0.01 0.22 7.48 -2.39 -0.02 0.20 16 45 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.08 1.36 7.16 -2.39 -0.02 1.34 16 47 H 0.04 1.18 7.10 -2.39 -0.02 1.17 16 48 H 0.12 1.62 7.84 -2.39 -0.02 1.60 16 49 H 0.10 1.83 6.30 -2.38 -0.02 1.82 16 50 H 0.10 1.30 5.30 -2.38 -0.01 1.29 16 51 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 52 H 0.03 0.65 7.38 -2.39 -0.02 0.63 16 53 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -76.76 386.17 2.74 -74.02 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.88 Total: 18.34 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 6.25 Total: 7.90 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -4.83 Total: -112.57 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -1.59 Total: -35.81 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -76.76 2.74 -74.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982683805.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.580 kcal (2) G-P(sol) polarization free energy of solvation -76.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds