Wall clock time and date at job start Tue Mar 31 2020 21:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47620 * 2 1 4 4 C 1.53096 * 109.47832 * 120.02044 * 2 1 3 5 5 C 1.53179 * 109.15802 * 177.59386 * 4 2 1 6 6 H 1.08995 * 109.54573 * 62.97914 * 5 4 2 7 7 C 1.50708 * 109.54274 * 183.15585 * 5 4 2 8 8 O 1.21281 * 119.99668 * 29.89235 * 7 5 4 9 9 N 1.34773 * 120.00102 * 209.89825 * 7 5 4 10 10 C 1.48110 * 127.84303 * 355.23682 * 9 7 5 11 11 C 1.54317 * 104.71441 * 140.21515 * 10 9 7 12 12 C 1.52998 * 112.07714 * 145.86830 * 11 10 9 13 13 C 1.54083 * 108.89675 * 271.76296 * 11 10 9 14 14 N 1.47206 * 106.24218 * 131.03302 * 13 11 10 15 15 C 1.36935 * 126.70496 * 148.58223 * 14 13 11 16 16 H 1.07995 * 120.00194 * 193.32765 * 15 14 13 17 17 C 1.38812 * 119.99898 * 13.32764 * 15 14 13 18 18 N 1.31625 * 119.99858 * 9.34469 * 17 15 14 19 19 Si 1.86796 * 120.00018 * 189.35169 * 17 15 14 20 20 H 1.48504 * 109.47199 * 94.64484 * 19 17 15 21 21 H 1.48501 * 109.47060 * 214.64254 * 19 17 15 22 22 H 1.48497 * 109.47226 * 334.64309 * 19 17 15 23 23 C 1.47205 * 106.59213 * 328.31965 * 14 13 11 24 24 C 1.53762 * 106.40766 * 31.59186 * 23 14 13 25 25 C 1.53000 * 112.06787 * 103.41716 * 24 23 14 26 26 C 1.50798 * 127.63072 * 175.40809 * 9 7 5 27 27 C 1.53177 * 109.03847 * 303.01920 * 5 4 2 28 28 C 1.53091 * 109.16372 * 56.97997 * 27 5 4 29 29 O 1.42894 * 109.48145 * 239.96477 * 2 1 3 30 30 H 1.09004 * 109.47423 * 299.97294 * 1 2 3 31 31 H 1.08998 * 109.47170 * 59.97753 * 1 2 3 32 32 H 1.09007 * 109.47102 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.52225 * 57.69315 * 4 2 1 34 34 H 1.08998 * 109.52545 * 297.49815 * 4 2 1 35 35 H 1.09000 * 110.39122 * 21.40472 * 10 9 7 36 36 H 1.09006 * 110.38552 * 259.01499 * 10 9 7 37 37 H 1.09000 * 109.47138 * 302.40557 * 12 11 10 38 38 H 1.08995 * 109.47233 * 62.41098 * 12 11 10 39 39 H 1.09000 * 109.46684 * 182.41000 * 12 11 10 40 40 H 1.09003 * 110.22501 * 11.81019 * 13 11 10 41 41 H 1.08992 * 110.07514 * 250.17530 * 13 11 10 42 42 H 0.97003 * 119.99705 * 179.97438 * 18 17 15 43 43 H 1.08998 * 110.06725 * 150.82395 * 23 14 13 44 44 H 1.09002 * 110.07066 * 272.35243 * 23 14 13 45 45 H 1.08998 * 109.47044 * 61.01133 * 25 24 23 46 46 H 1.08999 * 109.47104 * 181.01549 * 25 24 23 47 47 H 1.09007 * 109.46692 * 301.01202 * 25 24 23 48 48 H 1.09000 * 110.66774 * 101.41873 * 26 9 7 49 49 H 1.08998 * 111.33993 * 338.19101 * 26 9 7 50 50 H 1.08996 * 109.52573 * 176.88884 * 27 5 4 51 51 H 1.09005 * 109.52276 * 297.07575 * 27 5 4 52 52 H 1.08998 * 109.48175 * 182.40668 * 28 27 5 53 53 H 1.09006 * 109.48769 * 62.38032 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0405 -0.7221 1.2497 5 6 3.5711 -0.7706 1.2123 6 1 3.9689 0.2437 1.2424 7 6 4.0800 -1.5473 2.3993 8 8 3.4076 -2.4375 2.8750 9 7 5.2823 -1.2525 2.9323 10 6 6.2809 -0.2769 2.4377 11 6 6.8367 0.3947 3.7111 12 6 8.3175 0.7536 3.5724 13 6 5.9516 1.6057 4.0635 14 7 5.6321 1.4795 5.4949 15 6 5.4204 2.5031 6.3796 16 1 5.4058 2.3050 7.4411 17 6 5.2246 3.7953 5.9119 18 7 5.0586 4.0110 4.6241 19 14 5.1969 5.2281 7.1101 20 1 6.5506 5.8333 7.1895 21 1 4.2255 6.2481 6.6397 22 1 4.7924 4.7420 8.4537 23 6 5.5783 0.0380 5.7881 24 6 6.5873 -0.6354 4.8433 25 6 7.8790 -1.0249 5.5648 26 6 5.9132 -1.8470 4.1662 27 6 4.0176 -1.4600 -0.0807 28 6 3.4307 -0.7094 -1.2789 29 8 2.0066 -0.6743 -1.1662 30 1 -0.3634 0.5134 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6443 -1.7374 1.2711 34 1 1.7148 -0.1841 2.1399 35 1 5.8032 0.4632 1.7957 36 1 7.0785 -0.7894 1.8998 37 1 8.8895 -0.1457 3.3440 38 1 8.4419 1.4777 2.7672 39 1 8.6759 1.1846 4.5072 40 1 5.0357 1.5876 3.4728 41 1 6.4960 2.5324 3.8821 42 1 4.9214 4.9140 4.2974 43 1 5.8589 -0.1434 6.8257 44 1 4.5755 -0.3451 5.5990 45 1 7.6515 -1.7368 6.3582 46 1 8.5688 -1.4806 4.8544 47 1 8.3370 -0.1346 5.9959 48 1 6.6591 -2.5941 3.8950 49 1 5.1620 -2.2814 4.8258 50 1 5.1058 -1.4497 -0.1419 51 1 3.6614 -2.4902 -0.0860 52 1 3.7100 -1.2205 -2.2003 53 1 3.8192 0.3089 -1.2960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982683806.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:25 Heat of formation + Delta-G solvation = -80.727487 kcal Electronic energy + Delta-G solvation = -32009.831559 eV Core-core repulsion = 28073.824745 eV Total energy + Delta-G solvation = -3936.006814 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.92307 -40.76022 -39.32977 -36.51023 -34.93631 -34.31872 -33.72483 -33.05775 -32.52150 -29.06525 -28.49343 -27.73459 -26.93659 -26.55279 -25.45881 -24.05936 -23.42893 -21.66841 -21.59632 -20.22790 -19.21849 -18.75972 -18.00261 -17.34568 -17.10039 -16.84893 -16.58818 -16.23975 -15.77475 -15.69237 -15.60802 -15.19519 -15.08381 -14.76575 -14.54050 -14.31156 -13.98460 -13.57623 -13.53825 -13.44654 -13.28123 -13.26983 -13.08212 -12.98456 -12.88957 -12.74682 -12.56450 -12.52053 -12.38906 -12.14566 -12.12618 -11.96268 -11.81793 -11.78755 -11.55042 -11.38992 -11.23173 -11.11993 -10.94023 -10.69212 -10.41208 -9.72720 -8.87932 -7.91500 -5.26088 1.44189 1.44621 1.52631 1.53860 1.88832 2.46637 2.79887 3.26701 3.29949 3.45451 3.57239 3.61139 3.70268 3.87215 3.87736 3.89865 4.09498 4.15514 4.16242 4.32094 4.37359 4.38471 4.40759 4.46704 4.47938 4.58840 4.63336 4.70236 4.71020 4.75159 4.78613 4.81901 4.87350 4.92430 4.94316 4.98145 5.00634 5.03215 5.08960 5.18117 5.22205 5.25663 5.26222 5.31557 5.40489 5.48106 5.51110 5.67147 5.78133 6.20506 6.24597 6.53914 7.06215 7.07467 7.72586 8.45222 9.20769 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010722 B = 0.004216 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.793238 B = 6640.047985 C = 8105.667557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.090 3.910 3 H 0.062 0.938 4 C -0.128 4.128 5 C -0.103 4.103 6 H 0.092 0.908 7 C 0.537 3.463 8 O -0.589 6.589 9 N -0.621 5.621 10 C 0.117 3.883 11 C -0.086 4.086 12 C -0.113 4.113 13 C 0.194 3.806 14 N -0.613 5.613 15 C -0.244 4.244 16 H 0.073 0.927 17 C -0.055 4.055 18 N -0.942 5.942 19 Si 0.973 3.027 20 H -0.282 1.282 21 H -0.295 1.295 22 H -0.273 1.273 23 C 0.141 3.859 24 C -0.074 4.074 25 C -0.116 4.116 26 C 0.122 3.878 27 C -0.132 4.132 28 C 0.062 3.938 29 O -0.392 6.392 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.046 0.954 40 H -0.018 1.018 41 H 0.045 0.955 42 H 0.249 0.751 43 H 0.042 0.958 44 H -0.013 1.013 45 H 0.062 0.938 46 H 0.087 0.913 47 H 0.051 0.949 48 H 0.106 0.894 49 H 0.061 0.939 50 H 0.099 0.901 51 H 0.067 0.933 52 H 0.122 0.878 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.699 -10.492 -11.663 16.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.033 3.967 3 H 0.080 0.920 4 C -0.167 4.167 5 C -0.124 4.124 6 H 0.110 0.890 7 C 0.327 3.673 8 O -0.470 6.470 9 N -0.353 5.353 10 C -0.005 4.005 11 C -0.089 4.089 12 C -0.170 4.170 13 C 0.068 3.932 14 N -0.337 5.337 15 C -0.373 4.373 16 H 0.091 0.909 17 C -0.249 4.249 18 N -0.590 5.590 19 Si 0.802 3.198 20 H -0.209 1.209 21 H -0.221 1.221 22 H -0.198 1.198 23 C 0.015 3.985 24 C -0.076 4.076 25 C -0.174 4.174 26 C 0.000 4.000 27 C -0.170 4.170 28 C -0.015 4.015 29 O -0.312 6.312 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.129 0.871 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.000 1.000 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.004 0.996 45 H 0.081 0.919 46 H 0.106 0.894 47 H 0.070 0.930 48 H 0.124 0.876 49 H 0.079 0.921 50 H 0.118 0.882 51 H 0.086 0.914 52 H 0.140 0.860 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.064 -10.831 -11.564 16.357 hybrid contribution -0.584 1.318 1.370 1.989 sum 3.480 -9.514 -10.194 14.372 Atomic orbital electron populations 1.21761 0.91824 1.03114 1.03254 1.22092 0.96183 0.94693 0.83756 0.91957 1.22039 0.93529 1.02119 0.98988 1.21351 0.97196 1.00096 0.93788 0.88994 1.20574 0.79107 0.83003 0.84654 1.90630 1.57513 1.34212 1.64693 1.49641 1.16661 1.40922 1.28048 1.22642 0.91084 0.91041 0.95755 1.22510 0.97391 0.95067 0.93883 1.21567 0.91745 1.02141 1.01574 1.21052 0.93353 0.95160 0.83589 1.44729 1.81524 1.00375 1.07073 1.19338 1.41978 0.87209 0.88789 0.90949 1.25585 1.01459 1.00016 0.97839 1.70113 1.55495 1.20049 1.13340 0.85145 0.77270 0.79066 0.78347 1.20897 1.22147 1.19770 1.21522 0.94690 0.84952 0.97362 1.22225 0.96364 0.93879 0.95102 1.21632 0.94316 1.01199 1.00205 1.22914 0.96405 0.95208 0.85467 1.22107 1.02718 0.99959 0.92260 1.22756 0.79998 1.00483 0.98231 1.87897 1.22309 1.78131 1.42842 0.90607 0.90615 0.91914 0.91238 0.92545 0.90458 0.87120 0.89233 0.92328 0.93534 0.99969 0.93674 0.94199 0.93966 0.99571 0.91918 0.89376 0.92987 0.87634 0.92066 0.88236 0.91427 0.85972 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.56 71.98 0.69 -2.37 16 2 C 0.09 2.25 3.26 30.63 0.10 2.35 16 3 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.13 -3.80 4.36 30.69 0.13 -3.67 16 5 C -0.10 -2.92 2.20 -11.42 -0.03 -2.95 16 6 H 0.09 2.64 6.63 -2.39 -0.02 2.63 16 7 C 0.54 18.47 6.98 87.66 0.61 19.08 16 8 O -0.59 -24.51 16.48 -3.03 -0.05 -24.56 16 9 N -0.62 -19.25 3.37 -801.22 -2.70 -21.94 16 10 C 0.12 3.08 5.79 86.52 0.50 3.58 16 11 C -0.09 -2.75 1.09 -50.66 -0.06 -2.81 16 12 C -0.11 -2.90 7.55 71.98 0.54 -2.35 16 13 C 0.19 8.98 4.81 86.61 0.42 9.40 16 14 N -0.61 -31.39 3.38 -694.84 -2.35 -33.74 16 15 C -0.24 -13.74 10.28 84.03 0.86 -12.87 16 16 H 0.07 3.99 7.85 -2.91 -0.02 3.96 16 17 C -0.05 -3.09 5.39 84.86 0.46 -2.63 16 18 N -0.94 -55.33 10.81 21.65 0.23 -55.09 16 19 Si 0.97 45.37 29.56 68.60 2.03 47.40 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 23 C 0.14 6.03 6.36 86.50 0.55 6.58 16 24 C -0.07 -2.30 1.06 -50.77 -0.05 -2.36 16 25 C -0.12 -2.80 7.47 71.98 0.54 -2.26 16 26 C 0.12 3.54 6.05 85.98 0.52 4.06 16 27 C -0.13 -2.80 5.40 30.68 0.17 -2.63 16 28 C 0.06 1.14 6.84 72.01 0.49 1.64 16 29 O -0.39 -9.50 10.41 -148.98 -1.55 -11.05 16 30 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.07 2.22 7.75 -2.39 -0.02 2.21 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.08 2.09 6.05 -2.39 -0.01 2.08 16 36 H 0.11 2.02 7.96 -2.38 -0.02 2.00 16 37 H 0.09 1.60 7.17 -2.39 -0.02 1.58 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.05 1.38 7.09 -2.39 -0.02 1.36 16 40 H -0.02 -0.92 7.47 -2.39 -0.02 -0.94 16 41 H 0.04 2.36 6.46 -2.39 -0.02 2.34 16 42 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 43 H 0.04 1.76 7.83 -2.39 -0.02 1.74 16 44 H -0.01 -0.65 7.48 -2.39 -0.02 -0.66 16 45 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.09 1.54 7.16 -2.39 -0.02 1.53 16 47 H 0.05 1.43 7.10 -2.38 -0.02 1.42 16 48 H 0.11 2.32 7.97 -2.39 -0.02 2.30 16 49 H 0.06 2.04 7.54 -2.39 -0.02 2.03 16 50 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 52 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 53 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -73.63 397.14 2.93 -70.69 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.87 Total: 18.51 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 6.45 Total: 9.78 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -4.81 Total: -110.77 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -1.60 Total: -35.62 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -73.63 2.93 -70.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982683806.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.036 kcal (2) G-P(sol) polarization free energy of solvation -73.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds