Wall clock time and date at job start Tue Mar 31 2020 21:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.48919 * 2 1 4 4 C 1.53092 * 109.48599 * 239.96758 * 2 1 3 5 5 C 1.53173 * 109.16402 * 182.41027 * 4 2 1 6 6 H 1.09003 * 109.54359 * 176.93646 * 5 4 2 7 7 C 1.50696 * 109.54520 * 297.11106 * 5 4 2 8 8 O 1.21277 * 119.99997 * 5.15170 * 7 5 4 9 9 N 1.34777 * 120.00096 * 185.14677 * 7 5 4 10 10 C 1.48106 * 127.84567 * 355.27632 * 9 7 5 11 11 C 1.54318 * 104.71675 * 140.19860 * 10 9 7 12 12 C 1.53001 * 112.07465 * 146.94850 * 11 10 9 13 13 C 1.53757 * 109.07681 * 271.63955 * 11 10 9 14 14 N 1.47206 * 106.40526 * 93.20143 * 13 11 10 15 15 C 1.36939 * 126.70405 * 211.36152 * 14 13 11 16 16 H 1.08001 * 119.99501 * 179.97438 * 15 14 13 17 17 C 1.38806 * 119.99635 * 359.96022 * 15 14 13 18 18 N 1.31617 * 120.00569 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99684 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47358 * 89.99716 * 19 17 15 21 21 H 1.48496 * 109.46846 * 209.99925 * 19 17 15 22 22 H 1.48500 * 109.47028 * 329.99739 * 19 17 15 23 23 C 1.47208 * 106.59231 * 31.32877 * 14 13 11 24 24 C 1.53760 * 106.40630 * 328.67440 * 23 14 13 25 25 C 1.53005 * 112.06260 * 140.99177 * 24 23 14 26 26 C 1.48110 * 127.84571 * 175.24263 * 9 7 5 27 27 C 1.53177 * 109.03840 * 56.98228 * 5 4 2 28 28 C 1.53091 * 109.16334 * 303.01612 * 27 5 4 29 29 O 1.42907 * 109.47849 * 120.02634 * 2 1 3 30 30 H 1.08996 * 109.46794 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47067 * 300.03311 * 1 2 3 32 32 H 1.09001 * 109.46680 * 60.03159 * 1 2 3 33 33 H 1.09000 * 109.52041 * 62.49995 * 4 2 1 34 34 H 1.09004 * 109.52206 * 302.31914 * 4 2 1 35 35 H 1.09005 * 110.39166 * 21.38626 * 10 9 7 36 36 H 1.09003 * 110.39181 * 259.00956 * 10 9 7 37 37 H 1.08998 * 109.46707 * 182.01589 * 12 11 10 38 38 H 1.09007 * 109.46629 * 302.01151 * 12 11 10 39 39 H 1.08999 * 109.47443 * 62.00953 * 12 11 10 40 40 H 1.09003 * 110.07482 * 333.96816 * 13 11 10 41 41 H 1.08996 * 110.11361 * 212.46159 * 13 11 10 42 42 H 0.97006 * 120.00181 * 179.97438 * 18 17 15 43 43 H 1.08991 * 110.06754 * 87.91493 * 23 14 13 44 44 H 1.08996 * 110.06792 * 209.44264 * 23 14 13 45 45 H 1.09003 * 109.46990 * 61.01745 * 25 24 23 46 46 H 1.09000 * 109.47155 * 181.01492 * 25 24 23 47 47 H 1.08995 * 109.46986 * 301.01437 * 25 24 23 48 48 H 1.09006 * 110.39087 * 338.62090 * 26 9 7 49 49 H 1.09003 * 110.38634 * 100.88084 * 26 9 7 50 50 H 1.09004 * 109.52049 * 62.92563 * 27 5 4 51 51 H 1.09001 * 109.52302 * 183.10771 * 27 5 4 52 52 H 1.09000 * 109.48243 * 297.62889 * 28 27 5 53 53 H 1.09000 * 109.48886 * 177.59369 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0407 -0.7223 -1.2495 5 6 3.5712 -0.7709 -1.2119 6 1 3.9394 -1.3314 -2.0712 7 6 4.1212 0.6315 -1.2516 8 8 3.3668 1.5802 -1.2104 9 7 5.4516 0.8316 -1.3329 10 6 6.5274 -0.1858 -1.2967 11 6 7.5526 0.2903 -2.3472 12 6 8.9876 -0.0643 -1.9521 13 6 7.1716 -0.2888 -3.7196 14 7 6.3375 0.7270 -4.3825 15 6 5.3201 0.4984 -5.2701 16 1 4.7757 1.3298 -5.6931 17 6 4.9888 -0.8016 -5.6262 18 7 5.6528 -1.8146 -5.1113 19 14 3.6013 -1.1134 -6.8376 20 1 4.1463 -1.1380 -8.2188 21 1 2.9632 -2.4193 -6.5338 22 1 2.5916 -0.0305 -6.7231 23 6 6.8103 2.0364 -3.9041 24 6 7.3153 1.8179 -2.4684 25 6 8.5822 2.6244 -2.1758 26 6 6.1697 2.1186 -1.4794 27 6 4.0177 -1.4601 0.0811 28 6 3.4307 -0.7093 1.2793 29 8 2.0065 -0.6742 1.1665 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5143 0.8897 32 1 -0.3633 0.5134 -0.8903 33 1 1.7150 -0.1844 -2.1398 34 1 1.6444 -1.7375 -1.2708 35 1 6.1331 -1.1653 -1.5674 36 1 6.9848 -0.2198 -0.3078 37 1 9.6770 0.3215 -2.7030 38 1 9.2184 0.3807 -0.9841 39 1 9.0896 -1.1476 -1.8875 40 1 6.6062 -1.2120 -3.5923 41 1 8.0689 -0.4784 -4.3086 42 1 5.4210 -2.7232 -5.3600 43 1 7.6229 2.3943 -4.5361 44 1 5.9899 2.7540 -3.9068 45 1 8.3699 3.6877 -2.2873 46 1 8.9127 2.4248 -1.1564 47 1 9.3666 2.3351 -2.8751 48 1 5.5052 2.8799 -1.8881 49 1 6.5702 2.4415 -0.5184 50 1 3.6614 -2.4902 0.0866 51 1 5.1059 -1.4498 0.1424 52 1 3.8192 0.3090 1.2960 53 1 3.7099 -1.2201 2.2008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982684033.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:34 Heat of formation + Delta-G solvation = -71.896362 kcal Electronic energy + Delta-G solvation = -33141.829710 eV Core-core repulsion = 29206.205843 eV Total energy + Delta-G solvation = -3935.623867 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.09516 -40.89202 -38.89407 -36.45042 -35.06778 -34.35670 -33.61247 -33.07203 -32.43794 -28.93546 -28.31313 -27.79907 -26.95477 -26.48530 -25.24512 -24.12923 -23.33446 -22.24415 -21.45014 -20.01651 -19.14647 -18.78250 -17.72918 -17.28668 -17.14602 -16.98103 -16.69192 -16.31210 -15.79489 -15.58909 -15.20988 -15.03930 -14.82698 -14.75193 -14.41214 -14.36943 -13.89319 -13.77124 -13.52252 -13.38467 -13.30309 -13.22185 -13.01453 -12.91793 -12.84023 -12.79310 -12.74011 -12.52455 -12.45223 -12.07283 -12.06696 -11.98241 -11.78100 -11.72556 -11.48756 -11.40630 -11.14300 -10.96932 -10.85277 -10.71672 -10.22679 -9.59007 -8.83915 -7.75823 -5.20355 1.38935 1.40103 1.47657 1.63780 2.09093 2.44474 2.82253 3.28410 3.36643 3.58202 3.63334 3.70856 3.75274 3.79854 3.92280 3.92699 4.07188 4.20725 4.26375 4.37997 4.38736 4.43657 4.51112 4.59620 4.63465 4.66181 4.72639 4.74920 4.77255 4.78704 4.82724 4.83565 4.87261 4.94654 4.98594 5.01791 5.02949 5.09318 5.16071 5.18716 5.26637 5.28717 5.30728 5.36831 5.39518 5.50193 5.55645 5.72060 5.90143 6.26554 6.39589 6.66098 7.13112 7.20646 7.78385 8.45476 9.21140 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009492 B = 0.006120 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.070504 B = 4573.724359 C = 6337.222994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.078 3.922 3 H 0.063 0.937 4 C -0.124 4.124 5 C -0.105 4.105 6 H 0.082 0.918 7 C 0.545 3.455 8 O -0.586 6.586 9 N -0.606 5.606 10 C 0.119 3.881 11 C -0.087 4.087 12 C -0.115 4.115 13 C 0.153 3.847 14 N -0.610 5.610 15 C -0.226 4.226 16 H 0.060 0.940 17 C -0.051 4.051 18 N -0.933 5.933 19 Si 0.959 3.041 20 H -0.287 1.287 21 H -0.286 1.286 22 H -0.284 1.284 23 C 0.139 3.861 24 C -0.075 4.075 25 C -0.116 4.116 26 C 0.123 3.877 27 C -0.138 4.138 28 C 0.062 3.938 29 O -0.390 6.390 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.096 0.904 41 H -0.020 1.020 42 H 0.248 0.752 43 H 0.018 0.982 44 H 0.020 0.980 45 H 0.061 0.939 46 H 0.086 0.914 47 H 0.062 0.938 48 H 0.048 0.952 49 H 0.096 0.904 50 H 0.093 0.907 51 H 0.094 0.906 52 H 0.033 0.967 53 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.627 1.448 14.866 15.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.021 3.979 3 H 0.081 0.919 4 C -0.162 4.162 5 C -0.127 4.127 6 H 0.100 0.900 7 C 0.335 3.665 8 O -0.468 6.468 9 N -0.337 5.337 10 C -0.004 4.004 11 C -0.090 4.090 12 C -0.173 4.173 13 C 0.028 3.972 14 N -0.334 5.334 15 C -0.356 4.356 16 H 0.078 0.922 17 C -0.244 4.244 18 N -0.583 5.583 19 Si 0.788 3.212 20 H -0.214 1.214 21 H -0.212 1.212 22 H -0.210 1.210 23 C 0.013 3.987 24 C -0.077 4.077 25 C -0.173 4.173 26 C 0.001 3.999 27 C -0.176 4.176 28 C -0.014 4.014 29 O -0.310 6.310 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.114 0.886 41 H -0.003 1.003 42 H 0.058 0.942 43 H 0.035 0.965 44 H 0.038 0.962 45 H 0.080 0.920 46 H 0.105 0.895 47 H 0.081 0.919 48 H 0.067 0.933 49 H 0.114 0.886 50 H 0.112 0.888 51 H 0.113 0.887 52 H 0.051 0.949 53 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.854 1.677 14.895 15.259 hybrid contribution -0.710 0.021 -2.076 2.194 sum 2.144 1.698 12.820 13.108 Atomic orbital electron populations 1.21723 0.91849 1.03138 1.02735 1.22323 0.96000 0.95725 0.83901 0.91930 1.21957 0.93255 1.01900 0.99084 1.21279 0.97144 0.93021 1.01207 0.90010 1.20340 0.80423 0.91378 0.74341 1.90543 1.57482 1.45389 1.53417 1.48705 1.04566 1.09920 1.70486 1.22663 0.86689 0.91653 0.99347 1.22483 0.96475 0.94034 0.95968 1.21584 0.91869 1.01747 1.02105 1.21830 0.91840 0.94992 0.88547 1.44575 1.36974 1.01866 1.49942 1.19162 1.07766 0.92076 1.16571 0.92244 1.25246 1.01614 0.95267 1.02260 1.69795 1.43185 0.97760 1.47532 0.85371 0.79562 0.77003 0.79223 1.21423 1.21245 1.20997 1.21577 0.95349 0.88201 0.93615 1.22282 0.95768 0.95812 0.93871 1.21605 0.93945 0.98790 1.03000 1.22360 0.92351 0.85986 0.99241 1.22246 1.02606 1.00659 0.92092 1.22665 0.80650 0.99023 0.99073 1.87834 1.21664 1.78157 1.43325 0.91242 0.91266 0.91017 0.92809 0.89608 0.91342 0.87894 0.92459 0.89503 0.92158 0.88643 1.00255 0.94220 0.96472 0.96180 0.92013 0.89499 0.91917 0.93336 0.88634 0.88826 0.88730 0.94873 0.85702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.57 71.98 0.69 -2.86 16 2 C 0.08 2.47 2.98 30.63 0.09 2.56 16 3 H 0.06 2.34 5.62 -2.39 -0.01 2.33 16 4 C -0.12 -4.21 4.57 30.68 0.14 -4.07 16 5 C -0.11 -3.67 2.33 -11.42 -0.03 -3.70 16 6 H 0.08 3.33 7.86 -2.39 -0.02 3.31 16 7 C 0.54 21.28 5.95 87.66 0.52 21.80 16 8 O -0.59 -26.28 13.98 -3.02 -0.04 -26.32 16 9 N -0.61 -21.07 3.31 -808.44 -2.68 -23.75 16 10 C 0.12 3.50 4.42 86.52 0.38 3.88 16 11 C -0.09 -2.76 1.08 -50.77 -0.05 -2.81 16 12 C -0.12 -2.65 7.55 71.98 0.54 -2.10 16 13 C 0.15 6.92 5.29 86.50 0.46 7.38 16 14 N -0.61 -30.76 3.39 -695.48 -2.36 -33.11 16 15 C -0.23 -12.87 10.34 84.03 0.87 -12.00 16 16 H 0.06 3.45 7.83 -2.91 -0.02 3.42 16 17 C -0.05 -2.83 5.49 84.86 0.47 -2.37 16 18 N -0.93 -52.60 10.08 21.65 0.22 -52.38 16 19 Si 0.96 46.40 29.55 68.60 2.03 48.42 16 20 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 22 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 23 C 0.14 5.78 6.31 86.50 0.55 6.33 16 24 C -0.08 -2.33 1.08 -50.77 -0.05 -2.38 16 25 C -0.12 -2.50 7.59 71.98 0.55 -1.96 16 26 C 0.12 3.90 6.07 86.51 0.52 4.43 16 27 C -0.14 -3.58 5.42 30.68 0.17 -3.41 16 28 C 0.06 1.57 6.62 72.01 0.48 2.05 16 29 O -0.39 -11.59 10.41 -148.98 -1.55 -13.14 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.05 2.06 8.09 -2.39 -0.02 2.04 16 34 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.07 2.26 5.78 -2.38 -0.01 2.24 16 36 H 0.10 2.18 7.95 -2.39 -0.02 2.16 16 37 H 0.06 1.35 7.16 -2.39 -0.02 1.34 16 38 H 0.09 1.40 7.25 -2.38 -0.02 1.39 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.10 4.90 4.68 -2.39 -0.01 4.89 16 41 H -0.02 -1.01 7.89 -2.39 -0.02 -1.03 16 42 H 0.25 13.63 8.31 -92.70 -0.77 12.86 16 43 H 0.02 0.72 7.88 -2.39 -0.02 0.70 16 44 H 0.02 0.89 7.38 -2.39 -0.02 0.87 16 45 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.09 1.38 7.24 -2.39 -0.02 1.37 16 47 H 0.06 1.38 7.15 -2.39 -0.02 1.36 16 48 H 0.05 1.81 7.21 -2.38 -0.02 1.79 16 49 H 0.10 2.36 8.00 -2.39 -0.02 2.34 16 50 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 51 H 0.09 2.14 5.74 -2.39 -0.01 2.13 16 52 H 0.03 0.93 7.38 -2.39 -0.02 0.91 16 53 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -70.21 386.22 2.78 -67.42 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.88 Total: 22.10 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 6.28 Total: 10.76 kcal Atomic # 7 Polarization: -104.42 SS G_CDS: -4.82 Total: -109.24 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -1.59 Total: -39.46 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -70.21 2.78 -67.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982684033.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.476 kcal (2) G-P(sol) polarization free energy of solvation -70.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds