Wall clock time and date at job start Tue Mar 31 2020 21:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.58409 * 2 1 4 4 C 1.53191 * 109.58783 * 120.28786 * 2 1 3 5 5 H 1.08997 * 109.52288 * 54.45366 * 4 2 1 6 6 N 1.46500 * 109.49653 * 294.36943 * 4 2 1 7 7 C 1.34776 * 119.99806 * 155.16256 * 6 4 2 8 8 O 1.21281 * 120.00148 * 355.36246 * 7 6 4 9 9 C 1.50698 * 119.99907 * 175.36522 * 7 6 4 10 10 C 1.53006 * 109.54316 * 293.40246 * 9 7 6 11 11 C 1.53001 * 117.49668 * 2.39260 * 10 9 7 12 12 C 1.52999 * 117.49518 * 293.73077 * 10 9 7 13 13 C 1.53184 * 109.54434 * 173.22705 * 9 7 6 14 14 C 1.53284 * 109.06085 * 297.02888 * 13 9 7 15 15 O 1.42904 * 109.45778 * 302.44214 * 14 13 9 16 16 C 1.42904 * 114.09671 * 61.16408 * 15 14 13 17 17 C 1.53087 * 109.41443 * 298.83515 * 16 15 14 18 18 C 1.53041 * 109.31070 * 174.42282 * 4 2 1 19 19 C 1.53038 * 109.53605 * 298.63297 * 18 4 2 20 20 C 1.53192 * 109.31537 * 61.36639 * 19 18 4 21 21 N 1.46923 * 109.58237 * 239.57848 * 2 1 3 22 22 C 1.36938 * 120.63539 * 6.59934 * 21 2 1 23 23 H 1.07995 * 119.99746 * 324.04565 * 22 21 2 24 24 C 1.38814 * 119.99982 * 144.04087 * 22 21 2 25 25 N 1.31612 * 119.99940 * 348.86467 * 24 22 21 26 26 Si 1.86802 * 119.99650 * 168.86293 * 24 22 21 27 27 H 1.48496 * 109.47262 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.46842 * 120.00289 * 26 24 22 29 29 H 1.48501 * 109.47013 * 239.99954 * 26 24 22 30 30 H 1.09012 * 109.46831 * 299.71233 * 1 2 3 31 31 H 1.09002 * 109.47540 * 59.71001 * 1 2 3 32 32 H 1.09001 * 109.46879 * 179.71730 * 1 2 3 33 33 H 0.97000 * 119.99943 * 335.16585 * 6 4 2 34 34 H 1.08997 * 115.55161 * 148.06374 * 10 9 7 35 35 H 1.09003 * 117.49646 * 359.97438 * 11 10 9 36 36 H 1.08995 * 117.49923 * 145.02054 * 11 10 9 37 37 H 1.09000 * 117.49279 * 214.97461 * 12 10 9 38 38 H 1.08999 * 117.50079 * 359.97438 * 12 10 9 39 39 H 1.09005 * 109.52125 * 57.01542 * 13 9 7 40 40 H 1.08999 * 109.52378 * 177.20657 * 13 9 7 41 41 H 1.09002 * 109.45550 * 182.44711 * 14 13 9 42 42 H 1.08995 * 109.47015 * 62.44348 * 14 13 9 43 43 H 1.09006 * 109.47593 * 178.85761 * 16 15 14 44 44 H 1.08998 * 109.48987 * 58.82553 * 16 15 14 45 45 H 1.09000 * 109.52250 * 297.70961 * 17 16 15 46 46 H 1.09002 * 109.52540 * 177.51698 * 17 16 15 47 47 H 1.08999 * 109.45792 * 178.61525 * 18 4 2 48 48 H 1.08992 * 109.46260 * 58.65607 * 18 4 2 49 49 H 1.09000 * 109.49586 * 301.41250 * 19 18 4 50 50 H 1.09004 * 109.49798 * 181.32183 * 19 18 4 51 51 H 1.09000 * 109.58170 * 65.14964 * 20 19 18 52 52 H 1.09000 * 109.58805 * 185.57404 * 20 19 18 53 53 H 0.97001 * 119.99768 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7279 1.2463 5 1 1.6030 -1.7237 1.2939 6 7 1.6707 0.0297 2.4434 7 6 1.5506 -0.5999 3.6290 8 8 1.6683 -1.8055 3.6901 9 6 1.2699 0.1940 4.8788 10 6 2.4720 1.0843 5.2004 11 6 3.6508 1.0588 4.2254 12 6 3.7774 0.3921 5.5976 13 6 1.0138 -0.7629 6.0472 14 6 -0.2386 -1.5945 5.7479 15 8 -1.3484 -0.7214 5.5279 16 6 -1.1830 0.1642 4.4186 17 6 0.0292 1.0663 4.6639 18 6 3.5675 -0.8465 1.1711 19 6 3.9569 -1.6657 -0.0616 20 6 3.4650 -0.9485 -1.3227 21 7 2.0225 -0.7009 -1.1937 22 6 1.1536 -1.1157 -2.1674 23 1 0.1721 -1.4764 -1.8974 24 6 1.5343 -1.0724 -3.5016 25 7 2.6317 -0.4361 -3.8525 26 14 0.4892 -1.9175 -4.7990 27 1 -0.6837 -2.5569 -4.1504 28 1 0.0211 -0.9138 -5.7883 29 1 1.2991 -2.9530 -5.4897 30 1 -0.3633 0.5094 0.8927 31 1 -0.3634 0.5183 -0.8874 32 1 -0.3633 -1.0277 -0.0051 33 1 1.5101 0.9844 2.3828 34 1 2.2385 2.0333 5.6830 35 1 3.5701 0.4075 3.3551 36 1 4.1931 1.9909 4.0669 37 1 4.4028 0.8861 6.3412 38 1 3.7796 -0.6974 5.6302 39 1 1.8715 -1.4241 6.1712 40 1 0.8598 -0.1891 6.9610 41 1 -0.4519 -2.2472 6.5944 42 1 -0.0692 -2.1986 4.8567 43 1 -2.0767 0.7783 4.3075 44 1 -1.0259 -0.4168 3.5098 45 1 -0.1446 1.6770 5.5499 46 1 0.1834 1.7123 3.7996 47 1 3.9379 -1.3423 2.0684 48 1 4.0062 0.1486 1.0991 49 1 3.4983 -2.6528 -0.0021 50 1 5.0412 -1.7697 -0.1017 51 1 3.9902 0.0003 -1.4317 52 1 3.6517 -1.5744 -2.1954 53 1 2.8979 -0.4062 -4.7848 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993628559.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:58 Heat of formation + Delta-G solvation = -59.429687 kcal Electronic energy + Delta-G solvation = -32353.121441 eV Core-core repulsion = 28418.038169 eV Total energy + Delta-G solvation = -3935.083272 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.31929 -40.01195 -38.80196 -37.92819 -35.93138 -34.39933 -33.91292 -33.38954 -32.02648 -30.88202 -27.98400 -27.02801 -26.71795 -24.77291 -24.48066 -23.03731 -22.66369 -22.31613 -22.00486 -21.19575 -20.12040 -18.26749 -17.86081 -17.47840 -17.34585 -16.95810 -16.73944 -16.34057 -15.75375 -15.68712 -15.62350 -15.35621 -15.33437 -14.83900 -14.61192 -14.52322 -14.32378 -14.14844 -13.38843 -13.36595 -13.30128 -13.18482 -12.87843 -12.82366 -12.71491 -12.53562 -12.45998 -12.39964 -12.16636 -12.04469 -11.96189 -11.82104 -11.76712 -11.61292 -11.47230 -11.32136 -11.17668 -10.93186 -10.58240 -10.54937 -10.37226 -9.89409 -8.56018 -7.87112 -5.40836 1.44050 1.47179 1.56193 1.64516 2.13560 2.51666 2.79038 2.94090 3.29554 3.43060 3.61358 3.67666 3.71489 3.85407 3.96056 3.99912 4.06353 4.10120 4.18842 4.19920 4.27634 4.34807 4.35977 4.50880 4.57886 4.61143 4.66668 4.68843 4.75593 4.78400 4.80757 4.86189 4.90515 4.92189 5.00272 5.06090 5.07842 5.08529 5.11787 5.17708 5.22025 5.27583 5.28865 5.31364 5.45963 5.48845 5.58181 5.70715 5.73705 6.22248 6.44538 6.60447 7.16912 7.29382 7.84397 8.39664 9.19169 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016769 B = 0.003611 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.336272 B = 7752.155202 C = 8669.690030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.167 3.833 3 H 0.033 0.967 4 C 0.148 3.852 5 H 0.053 0.947 6 N -0.704 5.704 7 C 0.525 3.475 8 O -0.578 6.578 9 C -0.045 4.045 10 C -0.131 4.131 11 C -0.202 4.202 12 C -0.176 4.176 13 C -0.120 4.120 14 C 0.049 3.951 15 O -0.395 6.395 16 C 0.050 3.950 17 C -0.136 4.136 18 C -0.105 4.105 19 C -0.131 4.131 20 C 0.181 3.819 21 N -0.599 5.599 22 C -0.256 4.256 23 H 0.064 0.936 24 C -0.039 4.039 25 N -0.930 5.930 26 Si 0.958 3.042 27 H -0.269 1.269 28 H -0.289 1.289 29 H -0.292 1.292 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.410 0.590 34 H 0.143 0.857 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.039 0.961 43 H 0.118 0.882 44 H 0.028 0.972 45 H 0.108 0.892 46 H 0.096 0.904 47 H 0.052 0.948 48 H 0.068 0.932 49 H 0.042 0.958 50 H 0.072 0.928 51 H 0.006 0.994 52 H 0.044 0.956 53 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.428 6.854 21.503 22.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.060 3.940 3 H 0.050 0.950 4 C 0.041 3.959 5 H 0.071 0.929 6 N -0.355 5.355 7 C 0.313 3.687 8 O -0.458 6.458 9 C -0.048 4.048 10 C -0.149 4.149 11 C -0.239 4.239 12 C -0.213 4.213 13 C -0.158 4.158 14 C -0.027 4.027 15 O -0.314 6.314 16 C -0.027 4.027 17 C -0.174 4.174 18 C -0.144 4.144 19 C -0.170 4.170 20 C 0.056 3.944 21 N -0.323 5.323 22 C -0.387 4.387 23 H 0.081 0.919 24 C -0.235 4.235 25 N -0.575 5.575 26 Si 0.787 3.213 27 H -0.194 1.194 28 H -0.216 1.216 29 H -0.219 1.219 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.247 0.753 34 H 0.161 0.839 35 H 0.108 0.892 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.058 0.942 43 H 0.136 0.864 44 H 0.046 0.954 45 H 0.126 0.874 46 H 0.114 0.886 47 H 0.071 0.929 48 H 0.087 0.913 49 H 0.060 0.940 50 H 0.090 0.910 51 H 0.024 0.976 52 H 0.063 0.937 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.457 6.020 21.477 22.352 hybrid contribution 0.084 -0.473 -1.657 1.725 sum -1.374 5.547 19.820 20.627 Atomic orbital electron populations 1.21702 0.94657 1.00767 1.01144 1.20702 0.94109 0.93404 0.85777 0.94967 1.21252 0.94707 0.95391 0.84504 0.92894 1.46026 1.69666 1.12632 1.07211 1.20891 0.74728 0.87717 0.85353 1.90659 1.51963 1.16332 1.86813 1.20505 0.96879 0.95540 0.91905 1.22272 0.87101 1.00802 1.04690 1.23519 1.02181 1.03949 0.94279 1.22994 1.00077 0.99435 0.98826 1.22010 0.98313 0.98026 0.97471 1.22799 0.86133 0.92192 1.01581 1.87878 1.41293 1.51689 1.50536 1.22766 1.00013 0.91835 0.88069 1.22308 0.91811 0.97764 1.05509 1.21669 0.95361 1.00256 0.97081 1.22032 1.00271 0.98692 0.96034 1.20540 0.83538 0.95879 0.94482 1.44175 1.02914 1.65777 1.19390 1.19326 0.98085 1.35397 0.85874 0.91858 1.25893 0.98877 0.99485 0.99245 1.70130 1.26391 1.44678 1.16288 0.85349 0.78692 0.77813 0.79457 1.19363 1.21621 1.21913 0.90771 0.93298 0.94519 0.75342 0.83947 0.89163 0.87067 0.86694 0.90620 0.91054 0.88369 0.87810 0.94232 0.86435 0.95375 0.87385 0.88595 0.92890 0.91348 0.93958 0.90973 0.97551 0.93711 0.94144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 7.90 71.98 0.57 -3.90 16 2 C 0.17 6.44 3.03 44.98 0.14 6.58 16 3 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 4 C 0.15 5.07 2.03 45.07 0.09 5.16 16 5 H 0.05 2.20 7.52 -2.39 -0.02 2.18 16 6 N -0.70 -18.21 2.87 -442.17 -1.27 -19.48 16 7 C 0.53 14.00 3.56 87.66 0.31 14.31 16 8 O -0.58 -20.46 13.75 -3.03 -0.04 -20.51 16 9 C -0.05 -0.85 0.52 -52.80 -0.03 -0.87 16 10 C -0.13 -1.94 5.25 -10.79 -0.06 -1.99 16 11 C -0.20 -3.63 9.36 30.62 0.29 -3.34 16 12 C -0.18 -2.96 9.61 30.62 0.29 -2.67 16 13 C -0.12 -2.36 4.28 30.75 0.13 -2.23 16 14 C 0.05 1.16 6.56 72.08 0.47 1.63 16 15 O -0.39 -9.37 10.77 -148.98 -1.60 -10.97 16 16 C 0.05 0.98 6.62 72.01 0.48 1.46 16 17 C -0.14 -2.01 4.76 30.68 0.15 -1.87 16 18 C -0.11 -3.54 4.29 30.62 0.13 -3.41 16 19 C -0.13 -5.05 6.08 30.67 0.19 -4.86 16 20 C 0.18 8.59 5.23 86.36 0.45 9.04 16 21 N -0.60 -29.02 2.95 -675.22 -1.99 -31.02 16 22 C -0.26 -13.70 8.39 84.03 0.70 -13.00 16 23 H 0.06 3.36 6.42 -2.91 -0.02 3.34 16 24 C -0.04 -2.12 5.01 84.86 0.42 -1.69 16 25 N -0.93 -53.88 11.44 21.65 0.25 -53.63 16 26 Si 0.96 44.56 29.57 68.60 2.03 46.58 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 28 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 29 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 30 H 0.07 2.04 7.79 -2.38 -0.02 2.03 16 31 H 0.05 1.89 7.71 -2.39 -0.02 1.87 16 32 H 0.04 1.42 7.37 -2.39 -0.02 1.40 16 33 H 0.41 8.49 7.44 -92.71 -0.69 7.80 16 34 H 0.14 1.38 8.07 -2.39 -0.02 1.36 16 35 H 0.09 2.10 3.75 -2.39 -0.01 2.09 16 36 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.60 7.27 -2.39 -0.02 1.58 16 39 H 0.07 1.56 6.87 -2.38 -0.02 1.54 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.04 1.18 6.06 -2.39 -0.01 1.17 16 43 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 44 H 0.03 0.69 7.38 -2.39 -0.02 0.67 16 45 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.10 1.13 7.07 -2.39 -0.02 1.11 16 47 H 0.05 1.76 7.82 -2.39 -0.02 1.74 16 48 H 0.07 2.15 8.08 -2.39 -0.02 2.13 16 49 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 51 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 52 H 0.04 2.41 6.49 -2.39 -0.02 2.40 16 53 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -67.01 387.98 2.31 -64.70 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.21 Total: 25.96 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 4.73 Total: -1.65 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -3.02 Total: -104.12 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -1.65 Total: -31.48 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -67.01 2.31 -64.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993628559.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.267 kcal (2) G-P(sol) polarization free energy of solvation -67.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds