Wall clock time and date at job start Tue Mar 31 2020 21:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.70547 * 2 1 4 4 C 1.53197 * 109.58391 * 239.64113 * 2 1 3 5 5 H 1.08999 * 109.52321 * 305.54997 * 4 2 1 6 6 N 1.46497 * 109.49459 * 65.63301 * 4 2 1 7 7 C 1.34780 * 119.99397 * 204.83918 * 6 4 2 8 8 O 1.21277 * 120.00465 * 3.65997 * 7 6 4 9 9 C 1.50707 * 119.99657 * 183.66108 * 7 6 4 10 10 C 1.53001 * 109.61349 * 68.81731 * 9 7 6 11 11 C 1.52994 * 117.50024 * 10.30201 * 10 9 7 12 12 C 1.52996 * 117.50039 * 301.67418 * 10 9 7 13 13 C 1.53177 * 109.54304 * 189.04110 * 9 7 6 14 14 C 1.53095 * 109.21341 * 62.91567 * 13 9 7 15 15 O 1.42904 * 109.41186 * 57.57836 * 14 13 9 16 16 C 1.42901 * 114.09764 * 298.83960 * 15 14 13 17 17 C 1.53082 * 109.41697 * 61.16174 * 16 15 14 18 18 C 1.53040 * 109.31162 * 185.58045 * 4 2 1 19 19 C 1.53040 * 109.53850 * 61.36784 * 18 4 2 20 20 C 1.53204 * 109.31157 * 298.63309 * 19 18 4 21 21 N 1.46922 * 108.77238 * 54.63661 * 20 19 18 22 22 C 1.36939 * 120.62980 * 126.41425 * 21 20 19 23 23 H 1.08005 * 119.99893 * 212.15062 * 22 21 20 24 24 C 1.38807 * 120.00053 * 32.15237 * 22 21 20 25 25 N 1.31622 * 120.00142 * 11.55357 * 24 22 21 26 26 Si 1.86806 * 120.00011 * 191.55527 * 24 22 21 27 27 H 1.48499 * 109.47183 * 89.99730 * 26 24 22 28 28 H 1.48499 * 109.47045 * 210.00346 * 26 24 22 29 29 H 1.48506 * 109.46875 * 329.99831 * 26 24 22 30 30 H 1.08998 * 109.47347 * 180.35852 * 1 2 3 31 31 H 1.08999 * 109.47057 * 300.35858 * 1 2 3 32 32 H 1.08996 * 109.46993 * 60.35306 * 1 2 3 33 33 H 0.96996 * 120.00670 * 24.83357 * 6 4 2 34 34 H 1.09004 * 115.54625 * 156.00854 * 10 9 7 35 35 H 1.09003 * 117.50321 * 359.97438 * 11 10 9 36 36 H 1.08998 * 117.50055 * 145.02008 * 11 10 9 37 37 H 1.09001 * 117.49889 * 214.97652 * 12 10 9 38 38 H 1.09000 * 117.50328 * 0.02562 * 12 10 9 39 39 H 1.09003 * 109.51930 * 302.97860 * 13 9 7 40 40 H 1.09002 * 109.52116 * 182.85891 * 13 9 7 41 41 H 1.09001 * 109.47291 * 177.55977 * 14 13 9 42 42 H 1.08996 * 109.47759 * 297.58234 * 14 13 9 43 43 H 1.09003 * 109.47313 * 181.14543 * 16 15 14 44 44 H 1.09001 * 109.47744 * 301.17129 * 16 15 14 45 45 H 1.09000 * 109.52813 * 62.29275 * 17 16 15 46 46 H 1.09005 * 109.52623 * 182.42088 * 17 16 15 47 47 H 1.08995 * 109.45877 * 181.38783 * 18 4 2 48 48 H 1.08996 * 109.46166 * 301.34976 * 18 4 2 49 49 H 1.09003 * 109.49990 * 58.58076 * 19 18 4 50 50 H 1.09002 * 109.50091 * 178.68850 * 19 18 4 51 51 H 1.09000 * 109.58504 * 174.41758 * 20 19 18 52 52 H 1.08993 * 109.58886 * 294.84664 * 20 19 18 53 53 H 0.96999 * 119.99615 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7295 -1.2454 5 1 1.6029 -1.7254 -1.2919 6 7 1.6706 0.0267 -2.4435 7 6 1.5503 -0.6045 -3.6283 8 8 1.6856 -1.8080 -3.6908 9 6 1.2478 0.1856 -4.8755 10 6 2.4545 1.0532 -5.2392 11 6 3.7601 0.8002 -4.4829 12 6 2.9410 2.0600 -4.1949 13 6 0.9411 -0.7749 -6.0287 14 6 -0.3141 -1.5835 -5.6906 15 8 -1.4027 -0.6906 -5.4460 16 6 -1.1923 0.1987 -4.3473 17 6 0.0275 1.0788 -4.6314 18 6 3.5674 -0.8482 -1.1702 19 6 3.9568 -1.6659 0.0635 20 6 3.4650 -0.9470 1.3238 21 7 2.0225 -0.6996 1.1945 22 6 1.1537 -1.1127 2.1690 23 1 0.1510 -1.4156 1.9055 24 6 1.5616 -1.1421 3.4955 25 7 2.6906 -0.5657 3.8498 26 14 0.5082 -1.9997 4.7778 27 1 0.9147 -3.4242 4.8802 28 1 0.6923 -1.3365 6.0937 29 1 -0.9201 -1.9200 4.3789 30 1 -0.3634 -1.0276 0.0064 31 1 -0.3633 0.5194 0.8867 32 1 -0.3633 0.5083 -0.8931 33 1 1.5101 0.9814 -2.3841 34 1 2.5276 1.3409 -6.2880 35 1 3.7595 0.0158 -3.7260 36 1 4.6926 0.9212 -5.0341 37 1 3.3347 3.0098 -4.5567 38 1 2.4019 2.1040 -3.2486 39 1 1.7831 -1.4522 -6.1723 40 1 0.7723 -0.2049 -6.9423 41 1 -0.5612 -2.2375 -6.5268 42 1 -0.1301 -2.1851 -4.8005 43 1 -2.0723 0.8284 -4.2159 44 1 -1.0200 -0.3795 -3.4395 45 1 -0.1602 1.6871 -5.5162 46 1 0.2154 1.7281 -3.7762 47 1 3.9377 -1.3450 -2.0668 48 1 4.0061 0.1471 -1.0993 49 1 3.4981 -2.6530 0.0053 50 1 5.0411 -1.7698 0.1038 51 1 3.6517 -1.5719 2.1972 52 1 3.9903 0.0018 1.4318 53 1 2.9758 -0.5866 4.7767 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993628562.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:02 Heat of formation + Delta-G solvation = -57.032278 kcal Electronic energy + Delta-G solvation = -32455.648422 eV Core-core repulsion = 28520.669109 eV Total energy + Delta-G solvation = -3934.979312 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.36517 -40.00679 -38.82351 -38.00260 -35.92536 -34.31929 -33.93846 -33.41116 -32.06082 -30.86345 -27.98170 -27.05378 -26.76988 -24.76418 -24.49940 -23.15730 -22.63070 -22.22892 -22.03882 -21.26200 -20.18588 -18.28774 -17.91546 -17.47882 -17.20998 -16.97579 -16.73369 -16.38579 -15.78833 -15.66672 -15.61597 -15.44412 -15.38381 -14.85176 -14.71001 -14.43411 -14.35296 -14.07907 -13.38483 -13.36286 -13.31454 -13.21296 -12.86887 -12.78802 -12.71411 -12.56069 -12.45104 -12.30242 -12.23576 -12.08192 -11.99972 -11.83125 -11.77760 -11.62928 -11.47145 -11.36099 -11.16421 -10.91967 -10.59542 -10.53880 -10.38272 -9.96800 -8.61819 -7.86330 -5.36546 1.45515 1.47647 1.55044 1.64096 2.10548 2.52009 2.81715 2.93580 3.29885 3.39392 3.59380 3.62599 3.73704 3.81184 3.93922 3.99214 4.03674 4.07784 4.15778 4.19075 4.30286 4.33317 4.33954 4.48809 4.56837 4.59517 4.64507 4.66706 4.74338 4.78568 4.79878 4.86985 4.90173 4.90398 5.00033 5.05194 5.06156 5.08841 5.11261 5.16362 5.19346 5.23798 5.26595 5.30312 5.43437 5.49464 5.59063 5.69406 5.75315 6.21477 6.42519 6.57085 7.16216 7.27135 7.85079 8.37843 9.20094 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016496 B = 0.003667 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.996118 B = 7633.973449 C = 8447.639410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.166 3.834 3 H 0.032 0.968 4 C 0.147 3.853 5 H 0.053 0.947 6 N -0.707 5.707 7 C 0.525 3.475 8 O -0.577 6.577 9 C -0.045 4.045 10 C -0.133 4.133 11 C -0.200 4.200 12 C -0.165 4.165 13 C -0.122 4.122 14 C 0.050 3.950 15 O -0.394 6.394 16 C 0.050 3.950 17 C -0.136 4.136 18 C -0.104 4.104 19 C -0.131 4.131 20 C 0.179 3.821 21 N -0.599 5.599 22 C -0.255 4.255 23 H 0.068 0.932 24 C -0.043 4.043 25 N -0.932 5.932 26 Si 0.960 3.040 27 H -0.289 1.289 28 H -0.294 1.294 29 H -0.269 1.269 30 H 0.037 0.963 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.406 0.594 34 H 0.138 0.862 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.120 0.880 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.037 0.963 43 H 0.118 0.882 44 H 0.028 0.972 45 H 0.107 0.893 46 H 0.091 0.909 47 H 0.053 0.947 48 H 0.066 0.934 49 H 0.041 0.959 50 H 0.071 0.929 51 H 0.052 0.948 52 H 0.005 0.995 53 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.869 7.424 -21.451 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.060 3.940 3 H 0.050 0.950 4 C 0.041 3.959 5 H 0.071 0.929 6 N -0.360 5.360 7 C 0.313 3.687 8 O -0.457 6.457 9 C -0.048 4.048 10 C -0.151 4.151 11 C -0.237 4.237 12 C -0.202 4.202 13 C -0.160 4.160 14 C -0.026 4.026 15 O -0.313 6.313 16 C -0.027 4.027 17 C -0.174 4.174 18 C -0.143 4.143 19 C -0.171 4.171 20 C 0.053 3.947 21 N -0.323 5.323 22 C -0.385 4.385 23 H 0.086 0.914 24 C -0.239 4.239 25 N -0.578 5.578 26 Si 0.789 3.211 27 H -0.216 1.216 28 H -0.220 1.220 29 H -0.194 1.194 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.245 0.755 34 H 0.156 0.844 35 H 0.093 0.907 36 H 0.125 0.875 37 H 0.138 0.862 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.056 0.944 43 H 0.136 0.864 44 H 0.046 0.954 45 H 0.126 0.874 46 H 0.109 0.891 47 H 0.071 0.929 48 H 0.084 0.916 49 H 0.060 0.940 50 H 0.090 0.910 51 H 0.071 0.929 52 H 0.023 0.977 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.896 6.600 -21.414 22.488 hybrid contribution 0.124 -0.513 1.655 1.737 sum -1.772 6.087 -19.759 20.751 Atomic orbital electron populations 1.21715 0.94595 1.00889 1.01195 1.20700 0.94135 0.93392 0.85810 0.95019 1.21263 0.94746 0.95416 0.84499 0.92860 1.46211 1.69957 1.12457 1.07396 1.20906 0.74800 0.87765 0.85244 1.90661 1.51979 1.16391 1.86655 1.20516 0.96724 0.95472 0.92098 1.22219 0.92406 1.01158 0.99354 1.23190 0.95991 1.00843 1.03646 1.23136 1.02921 0.94563 0.99570 1.21977 0.98323 0.98226 0.97425 1.22745 0.86584 0.91901 1.01372 1.87881 1.41449 1.50475 1.51511 1.22769 0.99759 0.91904 0.88251 1.22284 0.92190 0.97717 1.05213 1.21650 0.95351 1.00180 0.97094 1.22041 1.00237 0.98689 0.96095 1.20599 0.83290 0.96027 0.94780 1.44215 1.03041 1.65822 1.19217 1.19387 0.96332 1.36486 0.86270 0.91434 1.25811 0.98847 1.00313 0.98944 1.70134 1.24419 1.46637 1.16616 0.85381 0.79134 0.77895 0.78722 1.21644 1.22025 1.19369 0.94363 0.93153 0.90836 0.75523 0.84403 0.90695 0.87529 0.86164 0.89172 0.90938 0.88032 0.87567 0.94438 0.86450 0.95368 0.87448 0.89056 0.92879 0.91553 0.94012 0.91037 0.92934 0.97708 0.94192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 7.86 71.98 0.57 -3.95 16 2 C 0.17 6.46 3.03 44.98 0.14 6.59 16 3 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 4 C 0.15 5.11 2.02 45.07 0.09 5.20 16 5 H 0.05 2.23 7.53 -2.39 -0.02 2.22 16 6 N -0.71 -18.61 3.32 -442.15 -1.47 -20.07 16 7 C 0.53 14.21 3.11 87.66 0.27 14.48 16 8 O -0.58 -20.67 13.87 -3.02 -0.04 -20.71 16 9 C -0.04 -0.85 0.54 -52.80 -0.03 -0.88 16 10 C -0.13 -1.99 5.13 -10.80 -0.06 -2.05 16 11 C -0.20 -3.70 9.61 30.59 0.29 -3.41 16 12 C -0.17 -2.32 9.36 30.59 0.29 -2.04 16 13 C -0.12 -2.35 4.54 30.69 0.14 -2.22 16 14 C 0.05 1.17 6.56 72.01 0.47 1.64 16 15 O -0.39 -9.31 10.77 -148.98 -1.60 -10.91 16 16 C 0.05 0.99 6.62 72.01 0.48 1.47 16 17 C -0.14 -2.08 4.60 30.68 0.14 -1.94 16 18 C -0.10 -3.57 4.88 30.62 0.15 -3.42 16 19 C -0.13 -5.13 6.08 30.68 0.19 -4.95 16 20 C 0.18 8.55 5.25 86.37 0.45 9.00 16 21 N -0.60 -29.15 2.98 -675.21 -2.01 -31.16 16 22 C -0.25 -13.61 8.52 84.03 0.72 -12.89 16 23 H 0.07 3.55 6.29 -2.91 -0.02 3.54 16 24 C -0.04 -2.39 5.02 84.86 0.43 -1.96 16 25 N -0.93 -54.12 11.17 21.65 0.24 -53.88 16 26 Si 0.96 44.69 29.57 68.60 2.03 46.72 16 27 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 28 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 29 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 30 H 0.04 1.47 7.39 -2.39 -0.02 1.46 16 31 H 0.05 1.93 7.69 -2.39 -0.02 1.91 16 32 H 0.07 2.03 7.78 -2.39 -0.02 2.01 16 33 H 0.41 8.67 4.95 -92.71 -0.46 8.21 16 34 H 0.14 1.49 8.12 -2.38 -0.02 1.47 16 35 H 0.07 1.87 4.83 -2.39 -0.01 1.85 16 36 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.09 1.34 5.16 -2.39 -0.01 1.33 16 39 H 0.07 1.57 7.91 -2.39 -0.02 1.55 16 40 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.04 1.12 6.15 -2.39 -0.01 1.10 16 43 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.03 0.69 7.38 -2.39 -0.02 0.68 16 45 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.09 1.16 6.42 -2.38 -0.02 1.14 16 47 H 0.05 1.79 7.41 -2.39 -0.02 1.78 16 48 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 51 H 0.05 2.87 6.20 -2.39 -0.01 2.85 16 52 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 53 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -67.11 384.81 2.31 -64.79 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.44 Total: 26.53 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 4.72 Total: -1.31 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -3.24 Total: -105.11 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -1.65 Total: -31.62 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -67.11 2.31 -64.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993628562.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.762 kcal (2) G-P(sol) polarization free energy of solvation -67.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds