Wall clock time and date at job start Tue Mar 31 2020 21:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.70528 * 2 1 4 4 C 1.52760 * 109.50898 * 239.88531 * 2 1 3 5 5 H 1.08999 * 109.57014 * 65.66851 * 4 2 1 6 6 N 1.46506 * 109.38626 * 305.62901 * 4 2 1 7 7 C 1.34776 * 120.00062 * 157.23031 * 6 4 2 8 8 O 1.21276 * 120.00029 * 4.94602 * 7 6 4 9 9 C 1.50698 * 119.99940 * 184.94346 * 7 6 4 10 10 C 1.52999 * 109.54276 * 67.64658 * 9 7 6 11 11 C 1.53002 * 117.49987 * 3.84530 * 10 9 7 12 12 C 1.52994 * 117.49961 * 295.22190 * 10 9 7 13 13 C 1.53185 * 109.54511 * 307.38195 * 9 7 6 14 14 C 1.53087 * 109.16332 * 297.11518 * 13 9 7 15 15 O 1.42909 * 109.41326 * 302.38973 * 14 13 9 16 16 C 1.42907 * 114.09506 * 61.15982 * 15 14 13 17 17 C 1.53090 * 109.41481 * 298.83748 * 16 15 14 18 18 C 1.53044 * 109.38635 * 185.70597 * 4 2 1 19 19 C 1.53043 * 109.53870 * 61.23407 * 18 4 2 20 20 C 1.53195 * 109.31413 * 298.64165 * 19 18 4 21 21 N 1.46923 * 108.77702 * 54.63307 * 20 19 18 22 22 C 1.36932 * 120.62975 * 126.37163 * 21 20 19 23 23 H 1.08007 * 119.99829 * 210.80252 * 22 21 20 24 24 C 1.38808 * 120.00350 * 31.07556 * 22 21 20 25 25 N 1.31622 * 119.99758 * 11.49021 * 24 22 21 26 26 Si 1.86800 * 120.00248 * 191.48631 * 24 22 21 27 27 H 1.48501 * 109.47098 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46568 * 120.00200 * 26 24 22 29 29 H 1.48493 * 109.47382 * 239.99926 * 26 24 22 30 30 H 1.09004 * 109.46673 * 297.30551 * 1 2 3 31 31 H 1.08993 * 109.47181 * 57.30950 * 1 2 3 32 32 H 1.08992 * 109.47027 * 177.31478 * 1 2 3 33 33 H 0.96999 * 119.99313 * 337.23486 * 6 4 2 34 34 H 1.09000 * 115.54870 * 149.54931 * 10 9 7 35 35 H 1.09006 * 117.49430 * 359.97438 * 11 10 9 36 36 H 1.08999 * 117.50345 * 145.01712 * 11 10 9 37 37 H 1.09007 * 117.50102 * 214.97818 * 12 10 9 38 38 H 1.09003 * 117.50214 * 359.97438 * 12 10 9 39 39 H 1.09000 * 109.51592 * 57.01730 * 13 9 7 40 40 H 1.08999 * 109.52119 * 177.20324 * 13 9 7 41 41 H 1.09000 * 109.48053 * 182.40586 * 14 13 9 42 42 H 1.09002 * 109.48067 * 62.36972 * 14 13 9 43 43 H 1.08999 * 109.47703 * 178.85963 * 16 15 14 44 44 H 1.08994 * 109.48175 * 58.82660 * 16 15 14 45 45 H 1.08994 * 109.52623 * 297.71157 * 17 16 15 46 46 H 1.08996 * 109.57096 * 177.54365 * 17 16 15 47 47 H 1.09006 * 109.45509 * 301.21826 * 18 4 2 48 48 H 1.08990 * 109.46079 * 181.25756 * 18 4 2 49 49 H 1.08992 * 109.49950 * 178.68424 * 19 18 4 50 50 H 1.09002 * 109.49511 * 58.59321 * 19 18 4 51 51 H 1.09000 * 109.58039 * 294.84462 * 20 19 18 52 52 H 1.08999 * 109.58686 * 174.42217 * 20 19 18 53 53 H 0.96998 * 120.00154 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0401 -0.7224 -1.2455 5 1 1.7632 -0.1565 -2.1350 6 7 1.4437 -2.0590 -1.3110 7 6 1.3584 -2.7017 -2.4926 8 8 1.8551 -2.2138 -3.4855 9 6 0.6459 -4.0268 -2.5798 10 6 -0.8501 -3.8206 -2.3342 11 6 -1.3444 -2.3844 -2.1497 12 6 -1.2777 -3.3308 -0.9493 13 6 1.2128 -4.9838 -1.5266 14 6 2.6911 -5.2437 -1.8276 15 8 2.8206 -5.7771 -3.1471 16 6 2.3503 -4.9056 -4.1774 17 6 0.8582 -4.6322 -3.9708 18 6 3.5638 -0.8462 -1.1728 19 6 3.9524 -1.6686 0.0580 20 6 3.4645 -0.9519 1.3210 21 7 2.0226 -0.6996 1.1945 22 6 1.1538 -1.1135 2.1686 23 1 0.1432 -1.3916 1.9081 24 6 1.5701 -1.1703 3.4915 25 7 2.7115 -0.6191 3.8465 26 14 0.5105 -2.0287 4.7682 27 1 -0.7134 -2.5621 4.1180 28 1 1.2757 -3.1474 5.3751 29 1 0.1274 -1.0597 5.8261 30 1 -0.3633 0.4715 0.9132 31 1 -0.3633 0.5550 -0.8648 32 1 -0.3633 -1.0265 -0.0481 33 1 1.1101 -2.4812 -0.5040 34 1 -1.5113 -4.5187 -2.8476 35 1 -0.6036 -1.5865 -2.2028 36 1 -2.3310 -2.1374 -2.5417 37 1 -2.2206 -3.7064 -0.5516 38 1 -0.4933 -3.1558 -0.2129 39 1 1.1157 -4.5358 -0.5377 40 1 0.6639 -5.9250 -1.5567 41 1 3.0889 -5.9576 -1.1063 42 1 3.2463 -4.3083 -1.7576 43 1 2.5025 -5.3760 -5.1488 44 1 2.9010 -3.9659 -4.1381 45 1 0.3022 -5.5663 -4.0502 46 1 0.5066 -3.9333 -4.7297 47 1 4.0057 0.1476 -1.0997 48 1 3.9312 -1.3416 -2.0713 49 1 5.0363 -1.7761 0.0964 50 1 3.4906 -2.6541 -0.0024 51 1 3.9929 -0.0049 1.4309 52 1 3.6505 -1.5797 2.1924 53 1 3.0023 -0.6585 4.7710 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993628579.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:06 Heat of formation + Delta-G solvation = -51.445050 kcal Electronic energy + Delta-G solvation = -33530.210273 eV Core-core repulsion = 29595.473242 eV Total energy + Delta-G solvation = -3934.737032 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.37898 -40.08057 -38.72638 -38.01778 -35.62061 -34.02381 -33.95090 -33.35174 -32.03487 -30.97731 -27.95060 -26.96628 -26.85362 -24.78550 -24.26732 -23.34322 -22.66449 -22.37933 -21.98746 -20.51223 -20.23660 -18.31774 -17.88239 -17.49939 -17.01538 -16.96242 -16.49711 -16.39510 -15.82540 -15.76834 -15.66705 -15.36793 -15.12980 -14.82647 -14.55712 -14.42287 -14.27333 -14.10191 -13.51642 -13.35278 -13.28442 -12.93936 -12.86371 -12.79061 -12.76304 -12.43891 -12.33905 -12.27769 -12.21595 -12.13475 -12.02657 -11.87161 -11.69705 -11.43720 -11.34900 -11.31409 -11.05516 -10.89875 -10.55319 -10.49051 -10.32918 -9.84298 -8.57126 -7.79374 -5.28524 1.49104 1.52977 1.60447 1.70359 2.28185 2.54607 2.85054 2.93698 3.37963 3.45111 3.59438 3.62982 3.76428 3.88234 3.99302 4.05945 4.07779 4.09162 4.15359 4.19472 4.31052 4.33892 4.38861 4.56492 4.59165 4.63757 4.66106 4.70303 4.76112 4.78346 4.84893 4.89391 4.95354 4.98467 5.03520 5.06841 5.07816 5.09565 5.12598 5.17755 5.22555 5.26009 5.29059 5.36091 5.50624 5.56527 5.68398 5.75944 5.82028 6.21330 6.47041 6.70590 7.21746 7.33442 7.90767 8.45159 9.27235 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013016 B = 0.004894 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.722008 B = 5719.719029 C = 5990.130048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.157 3.843 3 H 0.026 0.974 4 C 0.143 3.857 5 H 0.075 0.925 6 N -0.696 5.696 7 C 0.524 3.476 8 O -0.576 6.576 9 C -0.046 4.046 10 C -0.135 4.135 11 C -0.189 4.189 12 C -0.174 4.174 13 C -0.138 4.138 14 C 0.056 3.944 15 O -0.393 6.393 16 C 0.050 3.950 17 C -0.119 4.119 18 C -0.115 4.115 19 C -0.125 4.125 20 C 0.180 3.820 21 N -0.593 5.593 22 C -0.241 4.241 23 H 0.081 0.919 24 C -0.048 4.048 25 N -0.937 5.937 26 Si 0.955 3.045 27 H -0.258 1.258 28 H -0.297 1.297 29 H -0.302 1.302 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.406 0.594 34 H 0.137 0.863 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.030 0.970 43 H 0.109 0.891 44 H 0.043 0.957 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.062 0.938 48 H 0.052 0.948 49 H 0.057 0.943 50 H 0.052 0.948 51 H -0.008 1.008 52 H 0.058 0.942 53 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.606 -8.477 -13.406 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.050 3.950 3 H 0.044 0.956 4 C 0.037 3.963 5 H 0.093 0.907 6 N -0.348 5.348 7 C 0.311 3.689 8 O -0.456 6.456 9 C -0.050 4.050 10 C -0.153 4.153 11 C -0.226 4.226 12 C -0.211 4.211 13 C -0.176 4.176 14 C -0.021 4.021 15 O -0.312 6.312 16 C -0.026 4.026 17 C -0.157 4.157 18 C -0.153 4.153 19 C -0.164 4.164 20 C 0.055 3.945 21 N -0.317 5.317 22 C -0.371 4.371 23 H 0.098 0.902 24 C -0.243 4.243 25 N -0.583 5.583 26 Si 0.784 3.216 27 H -0.182 1.182 28 H -0.224 1.224 29 H -0.230 1.230 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.245 0.755 34 H 0.154 0.846 35 H 0.102 0.898 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.048 0.952 43 H 0.127 0.873 44 H 0.062 0.938 45 H 0.116 0.884 46 H 0.097 0.903 47 H 0.081 0.919 48 H 0.070 0.930 49 H 0.076 0.924 50 H 0.071 0.929 51 H 0.010 0.990 52 H 0.076 0.924 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.147 -8.272 -13.968 17.358 hybrid contribution -0.084 0.387 1.692 1.738 sum -6.230 -7.885 -12.275 15.864 Atomic orbital electron populations 1.21832 0.93999 1.02444 1.00767 1.20741 0.94708 0.93261 0.86264 0.95635 1.21219 0.92693 0.83979 0.98436 0.90681 1.46203 1.60663 1.17960 1.10005 1.20740 0.78738 0.86698 0.82703 1.90610 1.49183 1.68864 1.36957 1.20490 0.94434 0.91731 0.98298 1.22253 0.93112 0.98784 1.01183 1.23272 1.03375 0.92938 1.02988 1.23079 1.03627 1.03660 0.90737 1.22255 0.96585 1.00707 0.98031 1.22652 0.95660 0.99021 0.84747 1.87876 1.84067 1.44083 1.15200 1.22795 0.94096 0.94229 0.91520 1.21969 0.97375 1.01748 0.94582 1.21697 0.95915 1.00235 0.97480 1.21953 0.99480 0.99002 0.95961 1.20567 0.83487 0.95662 0.94816 1.44261 1.02830 1.65252 1.19341 1.19483 0.95702 1.35850 0.86075 0.90169 1.25801 0.98587 1.00869 0.99030 1.70156 1.23870 1.47874 1.16446 0.85382 0.79104 0.77507 0.79563 1.18221 1.22442 1.22986 0.93452 0.92051 0.91377 0.75535 0.84550 0.89764 0.87246 0.86710 0.90025 0.90645 0.87917 0.87274 0.95206 0.87290 0.93839 0.88438 0.90287 0.91904 0.92974 0.92430 0.92934 0.99010 0.92381 0.94564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 7.37 71.98 0.53 -3.88 16 2 C 0.16 5.88 3.17 44.83 0.14 6.02 16 3 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 4 C 0.14 4.80 2.26 44.93 0.10 4.90 16 5 H 0.08 2.52 7.72 -2.39 -0.02 2.50 16 6 N -0.70 -21.08 1.88 -442.84 -0.83 -21.91 16 7 C 0.52 15.32 3.34 87.66 0.29 15.62 16 8 O -0.58 -20.05 13.65 -3.02 -0.04 -20.09 16 9 C -0.05 -1.07 0.54 -52.81 -0.03 -1.09 16 10 C -0.14 -2.63 5.23 -10.79 -0.06 -2.68 16 11 C -0.19 -4.08 8.95 30.59 0.27 -3.80 16 12 C -0.17 -3.63 8.62 30.59 0.26 -3.37 16 13 C -0.14 -3.07 4.53 30.69 0.14 -2.93 16 14 C 0.06 1.41 6.62 72.01 0.48 1.88 16 15 O -0.39 -10.40 10.77 -148.98 -1.60 -12.00 16 16 C 0.05 1.22 6.56 72.01 0.47 1.69 16 17 C -0.12 -2.53 4.51 30.68 0.14 -2.39 16 18 C -0.11 -3.95 5.53 30.62 0.17 -3.78 16 19 C -0.12 -4.62 5.93 30.67 0.18 -4.44 16 20 C 0.18 8.22 5.26 86.36 0.45 8.67 16 21 N -0.59 -26.27 2.67 -676.02 -1.80 -28.07 16 22 C -0.24 -11.53 8.52 84.03 0.72 -10.81 16 23 H 0.08 3.62 6.28 -2.91 -0.02 3.61 16 24 C -0.05 -2.45 5.03 84.86 0.43 -2.03 16 25 N -0.94 -52.62 11.08 21.65 0.24 -52.38 16 26 Si 0.95 41.87 29.57 68.60 2.03 43.90 16 27 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 28 H -0.30 -13.28 7.11 99.48 0.71 -12.58 16 29 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 30 H 0.05 1.73 7.50 -2.39 -0.02 1.71 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 2.14 3.95 -2.39 -0.01 2.13 16 33 H 0.41 12.74 4.23 -92.71 -0.39 12.35 16 34 H 0.14 2.04 8.08 -2.39 -0.02 2.02 16 35 H 0.08 2.22 5.06 -2.38 -0.01 2.21 16 36 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.08 2.06 4.59 -2.39 -0.01 2.05 16 39 H 0.07 1.79 6.11 -2.39 -0.01 1.78 16 40 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.11 2.41 8.14 -2.39 -0.02 2.40 16 42 H 0.03 0.88 7.38 -2.39 -0.02 0.86 16 43 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.04 1.30 6.09 -2.39 -0.01 1.29 16 45 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.08 1.74 7.92 -2.39 -0.02 1.72 16 47 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 48 H 0.05 1.81 7.89 -2.39 -0.02 1.79 16 49 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.05 1.94 7.53 -2.39 -0.02 1.92 16 51 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 52 H 0.06 3.01 6.11 -2.39 -0.01 3.00 16 53 H 0.25 13.59 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -59.28 377.20 3.21 -56.07 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: 0.52 Total: 36.90 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 4.70 Total: -2.42 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -2.39 Total: -102.36 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -1.65 Total: -32.10 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -59.28 3.21 -56.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993628579.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.628 kcal (2) G-P(sol) polarization free energy of solvation -59.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds