Wall clock time and date at job start Tue Mar 31 2020 21:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.57972 * 2 1 4 4 C 1.53196 * 109.70186 * 120.35403 * 2 1 3 5 5 H 1.08996 * 109.49832 * 294.45006 * 4 2 1 6 6 N 1.46503 * 109.49576 * 54.54465 * 4 2 1 7 7 C 1.34770 * 119.99950 * 207.40739 * 6 4 2 8 8 O 1.21280 * 119.99963 * 355.36926 * 7 6 4 9 9 C 1.50700 * 120.00353 * 175.37178 * 7 6 4 10 10 C 1.52999 * 109.54389 * 68.44072 * 9 7 6 11 11 C 1.53006 * 117.49737 * 4.39572 * 10 9 7 12 12 C 1.52995 * 117.50089 * 295.73298 * 10 9 7 13 13 C 1.53179 * 109.54189 * 308.26779 * 9 7 6 14 14 C 1.53281 * 109.06215 * 297.02832 * 13 9 7 15 15 O 1.42905 * 109.45924 * 302.44153 * 14 13 9 16 16 C 1.42905 * 114.09295 * 61.16305 * 15 14 13 17 17 C 1.53085 * 109.41663 * 298.83514 * 16 15 14 18 18 C 1.53037 * 109.31159 * 174.49308 * 4 2 1 19 19 C 1.53038 * 109.53735 * 298.63743 * 18 4 2 20 20 C 1.53191 * 109.31513 * 61.36452 * 19 18 4 21 21 N 1.46922 * 108.77708 * 305.36297 * 20 19 18 22 22 C 1.36936 * 120.63451 * 233.88110 * 21 20 19 23 23 H 1.08002 * 119.99826 * 148.70618 * 22 21 20 24 24 C 1.38813 * 120.00010 * 328.71510 * 22 21 20 25 25 N 1.31622 * 119.99505 * 344.38180 * 24 22 21 26 26 Si 1.86795 * 120.00032 * 164.38840 * 24 22 21 27 27 H 1.48499 * 109.46933 * 90.00058 * 26 24 22 28 28 H 1.48502 * 109.46721 * 209.99558 * 26 24 22 29 29 H 1.48495 * 109.47377 * 329.99888 * 26 24 22 30 30 H 1.08997 * 109.46786 * 177.49399 * 1 2 3 31 31 H 1.08995 * 109.47048 * 297.49505 * 1 2 3 32 32 H 1.09001 * 109.46899 * 57.50157 * 1 2 3 33 33 H 0.96997 * 119.99912 * 27.40147 * 6 4 2 34 34 H 1.09001 * 115.55008 * 150.05345 * 10 9 7 35 35 H 1.08994 * 117.49770 * 359.97438 * 11 10 9 36 36 H 1.08997 * 117.50246 * 145.02098 * 11 10 9 37 37 H 1.09003 * 117.49977 * 214.97679 * 12 10 9 38 38 H 1.09001 * 117.49904 * 359.97309 * 12 10 9 39 39 H 1.08994 * 109.52072 * 57.01672 * 13 9 7 40 40 H 1.08999 * 109.51987 * 177.20459 * 13 9 7 41 41 H 1.09002 * 109.45893 * 182.44693 * 14 13 9 42 42 H 1.08998 * 109.46692 * 62.44861 * 14 13 9 43 43 H 1.09007 * 109.47798 * 178.85467 * 16 15 14 44 44 H 1.09002 * 109.49214 * 58.83053 * 16 15 14 45 45 H 1.09006 * 109.52409 * 297.70842 * 17 16 15 46 46 H 1.08995 * 109.52598 * 177.51497 * 17 16 15 47 47 H 1.09001 * 109.46122 * 58.65497 * 18 4 2 48 48 H 1.08996 * 109.46147 * 178.63036 * 18 4 2 49 49 H 1.08998 * 109.49622 * 181.31594 * 19 18 4 50 50 H 1.08999 * 109.49826 * 301.40984 * 19 18 4 51 51 H 1.09004 * 109.58795 * 185.57532 * 20 19 18 52 52 H 1.09005 * 109.58595 * 65.15162 * 20 19 18 53 53 H 0.97003 * 119.99704 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7288 1.2446 5 1 1.7688 -0.1673 2.1365 6 7 1.4572 -2.0687 1.3063 7 6 1.2922 -2.6780 2.4971 8 8 1.7076 -2.1542 3.5090 9 6 0.5917 -4.0103 2.5712 10 6 1.4615 -5.0832 1.9130 11 6 2.8494 -4.6650 1.4233 12 6 1.7345 -4.9494 0.4136 13 6 -0.7531 -3.9232 1.8431 14 6 -1.6447 -2.9022 2.5587 15 8 -1.8083 -3.2880 3.9250 16 6 -0.5878 -3.3408 4.6664 17 6 0.3452 -4.3788 4.0374 18 6 3.5706 -0.8443 1.1675 19 6 3.9602 -1.6607 -0.0669 20 6 3.4654 -0.9424 -1.3263 21 7 2.0226 -0.6981 -1.1954 22 6 1.1529 -1.1179 -2.1662 23 1 0.1472 -1.4089 -1.9010 24 6 1.5639 -1.1696 -3.4910 25 7 2.6572 -0.5399 -3.8659 26 14 0.5652 -2.1326 -4.7418 27 1 -0.4546 -1.2424 -5.3522 28 1 1.4670 -2.6517 -5.8013 29 1 -0.1106 -3.2693 -4.0663 30 1 -0.3633 -1.0267 -0.0449 31 1 -0.3633 0.4744 0.9116 32 1 -0.3633 0.5521 -0.8668 33 1 1.1856 -2.5171 0.4903 34 1 1.3526 -6.0897 2.3169 35 1 3.1426 -3.6255 1.5696 36 1 3.6534 -5.3965 1.5045 37 1 1.8056 -5.8679 -0.1690 38 1 1.2942 -4.0972 -0.1042 39 1 -0.5897 -3.6081 0.8125 40 1 -1.2371 -4.8998 1.8540 41 1 -2.6193 -2.8668 2.0718 42 1 -1.1792 -1.9177 2.5122 43 1 -0.8010 -3.6214 5.6979 44 1 -0.1082 -2.3621 4.6476 45 1 -0.1166 -5.3646 4.0925 46 1 1.2935 -4.3892 4.5747 47 1 4.0072 0.1519 1.0965 48 1 3.9429 -1.3410 2.0634 49 1 5.0447 -1.7623 -0.1084 50 1 3.5037 -2.6488 -0.0086 51 1 3.6525 -1.5665 -2.2002 52 1 3.9887 0.0077 -1.4345 53 1 2.9446 -0.5763 -4.7916 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993628580.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:10 Heat of formation + Delta-G solvation = -51.627816 kcal Electronic energy + Delta-G solvation = -33509.600425 eV Core-core repulsion = 29574.855468 eV Total energy + Delta-G solvation = -3934.744957 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.37467 -40.06238 -38.70602 -38.02448 -35.60480 -34.17462 -33.78669 -33.35819 -32.00920 -31.00562 -27.94274 -26.96890 -26.83017 -24.75810 -24.33972 -23.22555 -22.79548 -22.42578 -21.94610 -20.50177 -20.23798 -18.25054 -17.90915 -17.54478 -16.94891 -16.93659 -16.56782 -16.38610 -15.88065 -15.71913 -15.66013 -15.35611 -15.07541 -14.84352 -14.57479 -14.43737 -14.37151 -13.98713 -13.54447 -13.33389 -13.26484 -12.99861 -12.86605 -12.75981 -12.67765 -12.45609 -12.41131 -12.28623 -12.22690 -12.17490 -12.02641 -11.93737 -11.66483 -11.41467 -11.36732 -11.29104 -11.02033 -10.92954 -10.55043 -10.48117 -10.34019 -9.84328 -8.56625 -7.80369 -5.27865 1.49623 1.53004 1.59608 1.69736 2.27831 2.54969 2.83118 2.95584 3.36782 3.44387 3.59085 3.62569 3.75913 3.88500 3.98987 4.05304 4.06779 4.07889 4.14595 4.21629 4.31945 4.33523 4.40056 4.54160 4.59763 4.64864 4.67179 4.68875 4.76312 4.79680 4.81813 4.91101 4.92939 4.98475 5.02653 5.05908 5.08531 5.10140 5.13410 5.18220 5.21617 5.23809 5.28065 5.34899 5.44869 5.57306 5.67027 5.76769 5.80850 6.23428 6.46099 6.71035 7.21302 7.33207 7.90740 8.45864 9.26331 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013369 B = 0.004863 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.877910 B = 5756.593901 C = 6072.929412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.156 3.844 3 H 0.026 0.974 4 C 0.141 3.859 5 H 0.075 0.925 6 N -0.697 5.697 7 C 0.524 3.476 8 O -0.576 6.576 9 C -0.047 4.047 10 C -0.131 4.131 11 C -0.197 4.197 12 C -0.174 4.174 13 C -0.138 4.138 14 C 0.056 3.944 15 O -0.393 6.393 16 C 0.051 3.949 17 C -0.120 4.120 18 C -0.114 4.114 19 C -0.133 4.133 20 C 0.183 3.817 21 N -0.591 5.591 22 C -0.246 4.246 23 H 0.078 0.922 24 C -0.043 4.043 25 N -0.934 5.934 26 Si 0.952 3.048 27 H -0.292 1.292 28 H -0.302 1.302 29 H -0.262 1.262 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.407 0.593 34 H 0.137 0.863 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.033 0.967 43 H 0.109 0.891 44 H 0.044 0.956 45 H 0.097 0.903 46 H 0.076 0.924 47 H 0.062 0.938 48 H 0.054 0.946 49 H 0.057 0.943 50 H 0.067 0.933 51 H 0.052 0.948 52 H -0.009 1.009 53 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.610 -9.652 13.103 16.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.049 3.951 3 H 0.044 0.956 4 C 0.034 3.966 5 H 0.093 0.907 6 N -0.349 5.349 7 C 0.311 3.689 8 O -0.457 6.457 9 C -0.050 4.050 10 C -0.150 4.150 11 C -0.234 4.234 12 C -0.211 4.211 13 C -0.176 4.176 14 C -0.021 4.021 15 O -0.312 6.312 16 C -0.025 4.025 17 C -0.157 4.157 18 C -0.153 4.153 19 C -0.171 4.171 20 C 0.057 3.943 21 N -0.315 5.315 22 C -0.376 4.376 23 H 0.095 0.905 24 C -0.239 4.239 25 N -0.580 5.580 26 Si 0.782 3.218 27 H -0.219 1.219 28 H -0.229 1.229 29 H -0.186 1.186 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.246 0.754 34 H 0.155 0.845 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.131 0.869 42 H 0.052 0.948 43 H 0.127 0.873 44 H 0.063 0.937 45 H 0.116 0.884 46 H 0.095 0.905 47 H 0.081 0.919 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.085 0.915 51 H 0.070 0.930 52 H 0.009 0.991 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.460 -9.281 13.713 17.149 hybrid contribution 0.364 0.130 -1.786 1.827 sum -4.096 -9.150 11.928 15.581 Atomic orbital electron populations 1.21682 0.94262 1.01718 1.00636 1.20839 0.94488 0.93300 0.86438 0.95621 1.21306 0.92922 0.83942 0.98384 0.90690 1.46231 1.61997 1.17808 1.08913 1.20746 0.78407 0.86852 0.82889 1.90612 1.51936 1.67398 1.35748 1.20508 0.95347 0.90964 0.98210 1.22279 0.96882 0.99524 0.96277 1.23349 0.92669 1.02784 1.04632 1.23058 1.02668 1.03688 0.91653 1.22295 0.93632 1.02376 0.99285 1.22704 1.01326 0.95813 0.82216 1.87879 1.31146 1.89678 1.22482 1.22776 0.84836 0.98760 0.96134 1.21973 1.00817 1.00413 0.92543 1.21698 0.95614 1.00328 0.97628 1.22085 0.99649 0.99791 0.95620 1.20512 0.83449 0.95496 0.94858 1.44242 1.02687 1.65265 1.19323 1.19390 0.96215 1.35907 0.86103 0.90460 1.25760 0.98886 1.00461 0.98818 1.70183 1.26959 1.44703 1.16121 0.85505 0.77847 0.79211 0.79266 1.21938 1.22903 1.18627 0.92402 0.92102 0.93415 0.75397 0.84504 0.89532 0.87506 0.86864 0.90049 0.90501 0.88033 0.86923 0.94815 0.87293 0.93747 0.88442 0.90493 0.91945 0.92714 0.92396 0.91481 0.92972 0.99082 0.94546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 7.72 71.98 0.56 -3.69 16 2 C 0.16 5.90 3.20 44.98 0.14 6.04 16 3 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 4 C 0.14 4.74 2.33 45.07 0.10 4.84 16 5 H 0.08 2.56 7.57 -2.39 -0.02 2.54 16 6 N -0.70 -21.18 2.04 -442.17 -0.90 -22.08 16 7 C 0.52 15.34 3.33 87.66 0.29 15.64 16 8 O -0.58 -20.07 13.87 -3.03 -0.04 -20.12 16 9 C -0.05 -1.09 0.53 -52.81 -0.03 -1.12 16 10 C -0.13 -2.72 5.22 -10.79 -0.06 -2.77 16 11 C -0.20 -4.78 8.85 30.62 0.27 -4.51 16 12 C -0.17 -4.02 9.28 30.62 0.28 -3.73 16 13 C -0.14 -2.94 4.55 30.75 0.14 -2.80 16 14 C 0.06 1.29 6.62 72.08 0.48 1.77 16 15 O -0.39 -9.80 10.77 -148.98 -1.60 -11.40 16 16 C 0.05 1.20 6.56 72.01 0.47 1.68 16 17 C -0.12 -2.53 4.52 30.68 0.14 -2.39 16 18 C -0.11 -3.84 5.39 30.62 0.17 -3.68 16 19 C -0.13 -4.77 5.76 30.67 0.18 -4.60 16 20 C 0.18 8.22 5.28 86.36 0.46 8.67 16 21 N -0.59 -26.14 2.62 -675.20 -1.77 -27.91 16 22 C -0.25 -11.80 8.57 84.03 0.72 -11.08 16 23 H 0.08 3.52 6.23 -2.91 -0.02 3.50 16 24 C -0.04 -2.24 4.92 84.86 0.42 -1.82 16 25 N -0.93 -52.42 11.35 21.65 0.25 -52.17 16 26 Si 0.95 41.77 29.58 68.60 2.03 43.80 16 27 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 28 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 29 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 30 H 0.06 1.89 6.37 -2.39 -0.02 1.87 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.05 1.75 7.80 -2.39 -0.02 1.74 16 33 H 0.41 12.81 4.24 -92.71 -0.39 12.42 16 34 H 0.14 2.20 8.08 -2.39 -0.02 2.18 16 35 H 0.09 2.54 4.02 -2.39 -0.01 2.53 16 36 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.08 2.24 5.10 -2.39 -0.01 2.23 16 39 H 0.08 1.73 6.26 -2.39 -0.01 1.71 16 40 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.03 0.89 7.38 -2.39 -0.02 0.88 16 43 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 44 H 0.04 1.28 6.12 -2.39 -0.01 1.26 16 45 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 46 H 0.08 1.72 7.91 -2.39 -0.02 1.71 16 47 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.07 2.37 5.26 -2.39 -0.01 2.35 16 51 H 0.05 2.67 6.25 -2.38 -0.01 2.65 16 52 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 53 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 Total: -1.00 -59.13 378.79 3.21 -55.92 By element: Atomic # 1 Polarization: 36.98 SS G_CDS: 0.52 Total: 37.50 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 4.73 Total: -3.54 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -2.43 Total: -102.16 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -1.65 Total: -31.52 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -59.13 3.21 -55.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993628580.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.294 kcal (2) G-P(sol) polarization free energy of solvation -59.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds