Wall clock time and date at job start Tue Mar 31 2020 21:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.70549 * 2 1 4 4 C 1.53197 * 109.58853 * 120.35844 * 2 1 3 5 5 H 1.08996 * 109.49569 * 54.47174 * 4 2 1 6 6 N 1.46497 * 109.52089 * 294.38928 * 4 2 1 7 7 C 1.34783 * 119.99633 * 155.14423 * 6 4 2 8 8 O 1.21280 * 119.99961 * 0.02562 * 7 6 4 9 9 C 1.50702 * 119.99743 * 179.97438 * 7 6 4 10 10 C 1.53872 * 113.60429 * 277.58396 * 9 7 6 11 11 C 1.53308 * 86.94439 * 220.33888 * 10 9 7 12 12 C 1.53327 * 87.55085 * 25.17735 * 11 10 9 13 13 C 1.52825 * 113.64484 * 139.94584 * 11 10 9 14 14 C 1.53270 * 108.88064 * 184.13530 * 13 11 10 15 15 O 1.42887 * 109.32868 * 304.69387 * 14 13 11 16 16 C 1.42905 * 114.36243 * 62.99332 * 15 14 13 17 17 C 1.52828 * 113.63863 * 270.40985 * 11 10 9 18 18 C 1.53039 * 109.31185 * 174.42224 * 4 2 1 19 19 C 1.53043 * 109.53866 * 298.63498 * 18 4 2 20 20 C 1.53185 * 109.31283 * 61.36496 * 19 18 4 21 21 N 1.46923 * 108.77717 * 305.36610 * 20 19 18 22 22 C 1.36940 * 120.62985 * 233.32902 * 21 20 19 23 23 H 1.08010 * 119.99517 * 150.19831 * 22 21 20 24 24 C 1.38805 * 120.00425 * 330.20686 * 22 21 20 25 25 N 1.31622 * 119.99962 * 344.54491 * 24 22 21 26 26 Si 1.86795 * 120.00332 * 164.54948 * 24 22 21 27 27 H 1.48496 * 109.47227 * 59.99553 * 26 24 22 28 28 H 1.48505 * 109.47370 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47123 * 299.99866 * 26 24 22 30 30 H 1.09002 * 109.47249 * 180.35336 * 1 2 3 31 31 H 1.09003 * 109.46722 * 300.35333 * 1 2 3 32 32 H 1.09000 * 109.46978 * 60.35318 * 1 2 3 33 33 H 0.96998 * 120.00389 * 335.14349 * 6 4 2 34 34 H 1.09004 * 112.83444 * 48.84696 * 9 7 6 35 35 H 1.09000 * 113.63510 * 334.85339 * 10 9 7 36 36 H 1.08994 * 113.63752 * 105.82141 * 10 9 7 37 37 H 1.09008 * 113.63227 * 220.30189 * 12 11 10 38 38 H 1.08995 * 113.71859 * 89.35150 * 12 11 10 39 39 H 1.08995 * 109.56888 * 303.95563 * 13 11 10 40 40 H 1.08999 * 109.56761 * 64.31751 * 13 11 10 41 41 H 1.08998 * 109.49187 * 184.73791 * 14 13 11 42 42 H 1.08997 * 109.51486 * 64.66342 * 14 13 11 43 43 H 1.08996 * 109.49501 * 177.05251 * 16 15 14 44 44 H 1.09000 * 109.51812 * 56.97831 * 16 15 14 45 45 H 1.08998 * 109.56769 * 295.67989 * 17 11 10 46 46 H 1.08996 * 109.57484 * 55.92222 * 17 11 10 47 47 H 1.09001 * 109.45974 * 178.61841 * 18 4 2 48 48 H 1.08994 * 109.44942 * 58.64643 * 18 4 2 49 49 H 1.09004 * 109.49462 * 301.41607 * 19 18 4 50 50 H 1.08999 * 109.52486 * 181.34099 * 19 18 4 51 51 H 1.09007 * 109.58846 * 185.57588 * 20 19 18 52 52 H 1.08999 * 109.58483 * 65.15834 * 20 19 18 53 53 H 0.96995 * 120.00418 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 1.2454 5 1 1.6030 -1.7254 1.2912 6 7 1.6705 0.0260 2.4439 7 6 1.5503 -0.6058 3.6284 8 8 1.7514 -1.7996 3.7021 9 6 1.1671 0.1713 4.8614 10 6 2.3526 0.8880 5.5311 11 6 1.7424 0.4678 6.8732 12 6 1.0723 -0.6939 6.1300 13 6 2.7779 0.0191 7.9037 14 6 2.0481 -0.4718 9.1589 15 8 1.1770 0.5572 9.6324 16 6 0.1342 0.9119 8.7219 17 6 0.7520 1.4838 7.4410 18 6 3.5675 -0.8480 1.1701 19 6 3.9569 -1.6657 -0.0636 20 6 3.4650 -0.9469 -1.3238 21 7 2.0225 -0.6995 -1.1945 22 6 1.1543 -1.1080 -2.1715 23 1 0.1398 -1.3755 -1.9149 24 6 1.5780 -1.1785 -3.4914 25 7 2.6901 -0.5778 -3.8586 26 14 0.5698 -2.1257 -4.7467 27 1 -0.7896 -1.5349 -4.8373 28 1 1.2321 -2.0484 -6.0737 29 1 0.4651 -3.5464 -4.3272 30 1 -0.3634 -1.0277 0.0063 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5083 -0.8931 33 1 1.5101 0.9808 2.3850 34 1 0.2998 0.8127 4.7046 35 1 3.3170 0.4237 5.3250 36 1 2.3579 1.9663 5.3719 37 1 0.0489 -0.8865 6.4522 38 1 1.6805 -1.5974 6.0893 39 1 3.3776 -0.7914 7.4896 40 1 3.4237 0.8585 8.1617 41 1 2.7772 -0.7152 9.9317 42 1 1.4643 -1.3598 8.9168 43 1 -0.5102 1.6614 9.1811 44 1 -0.4534 0.0267 8.4785 45 1 1.2735 2.4130 7.6706 46 1 -0.0328 1.6768 6.7097 47 1 3.9379 -1.3450 2.0667 48 1 4.0059 0.1474 1.0991 49 1 3.4983 -2.6528 -0.0054 50 1 5.0411 -1.7702 -0.1041 51 1 3.6518 -1.5716 -2.1973 52 1 3.9903 0.0020 -1.4317 53 1 2.9860 -0.6267 -4.7810 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994206226.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:41 Heat of formation + Delta-G solvation = -75.687701 kcal Electronic energy + Delta-G solvation = -30536.421078 eV Core-core repulsion = 26600.632806 eV Total energy + Delta-G solvation = -3935.788272 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.99605 -40.58528 -39.23665 -37.89548 -35.84825 -34.26133 -33.41584 -32.29398 -31.98781 -30.85263 -28.01110 -26.97692 -26.91316 -26.00733 -24.64888 -23.87720 -22.78859 -22.31692 -21.26051 -20.71687 -19.16576 -18.42200 -18.07134 -17.32839 -16.93585 -16.92213 -16.64326 -16.38985 -15.80491 -15.77428 -15.61715 -15.31562 -15.20011 -14.83595 -14.70237 -14.51159 -14.35279 -14.13890 -13.53014 -13.35659 -13.26590 -13.10093 -12.80636 -12.76717 -12.69417 -12.55187 -12.49502 -12.37919 -12.18990 -12.08554 -12.02490 -11.82792 -11.78387 -11.61602 -11.42242 -11.30762 -11.17957 -10.97825 -10.61900 -10.52918 -10.24907 -9.96116 -8.65101 -7.86429 -5.32986 1.45974 1.48824 1.54620 1.69853 2.22852 2.54149 3.01630 3.29048 3.41792 3.53605 3.56198 3.65990 3.72701 3.88149 4.00138 4.05339 4.14305 4.19277 4.22614 4.31030 4.35451 4.41978 4.52576 4.53655 4.58348 4.61632 4.75135 4.76701 4.80509 4.82972 4.85229 4.88109 4.92113 4.94753 5.00301 5.02530 5.11226 5.12014 5.15713 5.21194 5.23633 5.29486 5.39921 5.45201 5.49175 5.53236 5.61949 5.69446 5.75444 6.32556 6.41337 6.68000 7.15647 7.36759 7.86005 8.37907 9.20348 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.029494 B = 0.002277 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.122364 B =12293.762356 C =12664.966562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.165 3.835 3 H 0.033 0.967 4 C 0.147 3.853 5 H 0.053 0.947 6 N -0.707 5.707 7 C 0.518 3.482 8 O -0.589 6.589 9 C -0.129 4.129 10 C -0.105 4.105 11 C -0.076 4.076 12 C -0.110 4.110 13 C -0.137 4.137 14 C 0.060 3.940 15 O -0.404 6.404 16 C 0.055 3.945 17 C -0.127 4.127 18 C -0.107 4.107 19 C -0.130 4.130 20 C 0.177 3.823 21 N -0.601 5.601 22 C -0.255 4.255 23 H 0.071 0.929 24 C -0.048 4.048 25 N -0.933 5.933 26 Si 0.961 3.039 27 H -0.274 1.274 28 H -0.295 1.295 29 H -0.283 1.283 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.412 0.588 34 H 0.139 0.861 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.050 0.950 43 H 0.107 0.893 44 H 0.052 0.948 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.052 0.948 48 H 0.066 0.934 49 H 0.042 0.958 50 H 0.071 0.929 51 H 0.052 0.948 52 H 0.004 0.996 53 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.758 6.659 25.008 26.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.058 3.942 3 H 0.051 0.949 4 C 0.040 3.960 5 H 0.071 0.929 6 N -0.357 5.357 7 C 0.306 3.694 8 O -0.469 6.469 9 C -0.149 4.149 10 C -0.142 4.142 11 C -0.076 4.076 12 C -0.148 4.148 13 C -0.175 4.175 14 C -0.017 4.017 15 O -0.323 6.323 16 C -0.021 4.021 17 C -0.164 4.164 18 C -0.146 4.146 19 C -0.170 4.170 20 C 0.052 3.948 21 N -0.325 5.325 22 C -0.385 4.385 23 H 0.088 0.912 24 C -0.244 4.244 25 N -0.579 5.579 26 Si 0.789 3.211 27 H -0.199 1.199 28 H -0.221 1.221 29 H -0.209 1.209 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.249 0.751 34 H 0.157 0.843 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.119 0.881 42 H 0.068 0.932 43 H 0.125 0.875 44 H 0.070 0.930 45 H 0.098 0.902 46 H 0.110 0.890 47 H 0.071 0.929 48 H 0.084 0.916 49 H 0.060 0.940 50 H 0.090 0.910 51 H 0.071 0.929 52 H 0.023 0.977 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.551 5.921 25.053 25.869 hybrid contribution -0.168 -0.560 -1.715 1.812 sum -2.718 5.361 23.338 24.100 Atomic orbital electron populations 1.21723 0.94455 1.00932 1.01332 1.20720 0.94280 0.93419 0.85744 0.94921 1.21243 0.94649 0.95444 0.84695 0.92912 1.45970 1.69747 1.12737 1.07269 1.21159 0.75584 0.87534 0.85103 1.90669 1.52477 1.17492 1.86302 1.22865 1.02233 0.99410 0.90439 1.22856 0.95973 1.01452 0.93963 1.21477 0.96297 0.96071 0.93717 1.22865 1.01720 0.96924 0.93300 1.22089 0.97833 1.01854 0.95735 1.22648 0.92928 0.89637 0.96443 1.87863 1.43346 1.57236 1.43844 1.22758 0.89237 1.00050 0.90058 1.21977 0.98752 0.97899 0.97786 1.21660 0.95589 1.00191 0.97149 1.22023 1.00245 0.98704 0.96015 1.20605 0.83278 0.96058 0.94886 1.44276 1.03132 1.65996 1.19079 1.19385 0.95475 1.37080 0.86549 0.91175 1.25778 0.99112 1.00699 0.98766 1.70154 1.25583 1.45338 1.16798 0.85444 0.78516 0.78914 0.78198 1.19942 1.22090 1.20930 0.94295 0.90464 0.93308 0.75121 0.84297 0.90832 0.88407 0.90454 0.90930 0.91056 0.90658 0.88142 0.93211 0.87525 0.92963 0.90204 0.88961 0.92922 0.91571 0.93956 0.91011 0.92923 0.97742 0.94190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 7.83 71.98 0.56 -3.93 16 2 C 0.17 6.43 3.03 44.97 0.14 6.56 16 3 H 0.03 1.26 8.14 -2.39 -0.02 1.25 16 4 C 0.15 5.12 1.99 45.07 0.09 5.21 16 5 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 6 N -0.71 -18.32 4.59 -442.16 -2.03 -20.35 16 7 C 0.52 13.83 7.32 87.66 0.64 14.47 16 8 O -0.59 -21.49 15.56 -3.03 -0.05 -21.54 16 9 C -0.13 -2.17 3.80 -10.96 -0.04 -2.21 16 10 C -0.10 -1.48 6.78 30.99 0.21 -1.27 16 11 C -0.08 -1.01 0.77 -52.08 -0.04 -1.05 16 12 C -0.11 -1.92 6.36 30.99 0.20 -1.72 16 13 C -0.14 -1.92 5.33 30.63 0.16 -1.76 16 14 C 0.06 0.85 6.78 72.07 0.49 1.34 16 15 O -0.40 -6.72 10.72 -148.98 -1.60 -8.32 16 16 C 0.06 0.66 6.78 72.07 0.49 1.14 16 17 C -0.13 -1.30 5.23 30.63 0.16 -1.14 16 18 C -0.11 -3.73 5.46 30.62 0.17 -3.57 16 19 C -0.13 -5.15 6.08 30.67 0.19 -4.97 16 20 C 0.18 8.55 5.27 86.36 0.46 9.01 16 21 N -0.60 -29.47 2.99 -675.23 -2.02 -31.49 16 22 C -0.25 -13.67 8.56 84.03 0.72 -12.95 16 23 H 0.07 3.67 6.25 -2.91 -0.02 3.66 16 24 C -0.05 -2.65 4.94 84.86 0.42 -2.23 16 25 N -0.93 -54.51 11.23 21.65 0.24 -54.26 16 26 Si 0.96 44.81 29.58 68.60 2.03 46.84 16 27 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 28 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 29 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 30 H 0.04 1.48 7.45 -2.39 -0.02 1.46 16 31 H 0.08 2.09 7.80 -2.39 -0.02 2.07 16 32 H 0.05 1.87 7.62 -2.39 -0.02 1.85 16 33 H 0.41 8.05 8.60 -92.71 -0.80 7.25 16 34 H 0.14 1.59 7.65 -2.38 -0.02 1.57 16 35 H 0.07 1.28 8.05 -2.39 -0.02 1.26 16 36 H 0.10 1.00 8.09 -2.39 -0.02 0.98 16 37 H 0.08 1.21 7.63 -2.38 -0.02 1.19 16 38 H 0.07 1.66 7.31 -2.39 -0.02 1.64 16 39 H 0.07 1.07 8.04 -2.39 -0.02 1.05 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 42 H 0.05 0.71 8.12 -2.39 -0.02 0.69 16 43 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.05 0.60 7.68 -2.39 -0.02 0.59 16 45 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.09 0.69 7.35 -2.39 -0.02 0.67 16 47 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 51 H 0.05 2.88 6.16 -2.38 -0.01 2.87 16 52 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 53 H 0.25 14.20 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -68.94 399.43 1.67 -67.27 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.09 Total: 20.92 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 5.01 Total: 0.94 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -3.80 Total: -106.10 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -1.64 Total: -29.86 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -68.94 1.67 -67.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994206226.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.418 kcal (2) G-P(sol) polarization free energy of solvation -68.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds