Wall clock time and date at job start Tue Mar 31 2020 21:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.69843 * 2 1 4 4 C 1.53197 * 109.58303 * 239.64974 * 2 1 3 5 5 H 1.08991 * 109.49639 * 305.52477 * 4 2 1 6 6 N 1.46502 * 109.49791 * 65.62355 * 4 2 1 7 7 C 1.34773 * 119.99722 * 204.83459 * 6 4 2 8 8 O 1.21281 * 120.00192 * 0.02562 * 7 6 4 9 9 C 1.50706 * 119.99754 * 179.97438 * 7 6 4 10 10 C 1.53870 * 113.60396 * 279.18024 * 9 7 6 11 11 C 1.53478 * 86.88605 * 220.36863 * 10 9 7 12 12 C 1.53321 * 87.58205 * 25.10880 * 11 10 9 13 13 C 1.52818 * 113.69535 * 139.90251 * 11 10 9 14 14 C 1.53277 * 108.88023 * 184.07514 * 13 11 10 15 15 O 1.42900 * 109.32734 * 304.69215 * 14 13 11 16 16 C 1.42899 * 114.35942 * 62.98968 * 15 14 13 17 17 C 1.52831 * 113.56224 * 270.33775 * 11 10 9 18 18 C 1.53035 * 109.30967 * 185.57509 * 4 2 1 19 19 C 1.53039 * 109.53887 * 61.36369 * 18 4 2 20 20 C 1.53188 * 109.31445 * 298.63066 * 19 18 4 21 21 N 1.46918 * 109.58792 * 120.35897 * 2 1 3 22 22 C 1.36938 * 120.63418 * 353.37417 * 21 2 1 23 23 H 1.07993 * 119.99935 * 29.03183 * 22 21 2 24 24 C 1.38809 * 119.99948 * 209.03147 * 22 21 2 25 25 N 1.31624 * 120.00218 * 15.01906 * 24 22 21 26 26 Si 1.86805 * 119.99873 * 195.01625 * 24 22 21 27 27 H 1.48491 * 109.46862 * 60.00472 * 26 24 22 28 28 H 1.48506 * 109.46808 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47109 * 300.00114 * 26 24 22 30 30 H 1.09002 * 109.46844 * 180.35194 * 1 2 3 31 31 H 1.08998 * 109.46776 * 300.35011 * 1 2 3 32 32 H 1.08990 * 109.47226 * 60.35376 * 1 2 3 33 33 H 0.97001 * 120.00231 * 24.83835 * 6 4 2 34 34 H 1.08996 * 112.83868 * 50.33364 * 9 7 6 35 35 H 1.09005 * 113.63363 * 334.84918 * 10 9 7 36 36 H 1.09003 * 113.63539 * 105.82059 * 10 9 7 37 37 H 1.09002 * 113.63794 * 220.37922 * 12 11 10 38 38 H 1.08996 * 113.71335 * 89.41617 * 12 11 10 39 39 H 1.08997 * 109.57299 * 303.88984 * 13 11 10 40 40 H 1.09003 * 109.57157 * 64.25720 * 13 11 10 41 41 H 1.08995 * 109.49721 * 184.73538 * 14 13 11 42 42 H 1.08996 * 109.51674 * 64.65923 * 14 13 11 43 43 H 1.09002 * 109.49343 * 177.05384 * 16 15 14 44 44 H 1.08996 * 109.51793 * 56.97893 * 16 15 14 45 45 H 1.09003 * 109.57139 * 295.68055 * 17 11 10 46 46 H 1.09006 * 109.57161 * 55.91502 * 17 11 10 47 47 H 1.09008 * 109.46061 * 301.34366 * 18 4 2 48 48 H 1.09000 * 109.45039 * 181.38354 * 18 4 2 49 49 H 1.09007 * 109.49644 * 178.68611 * 19 18 4 50 50 H 1.08993 * 109.49855 * 58.59076 * 19 18 4 51 51 H 1.09000 * 109.58761 * 174.42099 * 20 19 18 52 52 H 1.08998 * 109.58990 * 294.85169 * 20 19 18 53 53 H 0.97005 * 119.99935 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0435 -0.7293 -1.2455 5 1 1.6030 -1.7252 -1.2915 6 7 1.6704 0.0269 -2.4436 7 6 1.5503 -0.6041 -3.6284 8 8 1.7506 -1.7979 -3.7028 9 6 1.1659 0.1737 -4.8607 10 6 -0.3457 0.4371 -4.9764 11 6 -0.1971 0.1437 -6.4756 12 6 1.0358 -0.6967 -6.1227 13 6 -1.3490 -0.6740 -7.0585 14 6 -1.0408 -0.9886 -8.5266 15 8 -0.7903 0.2303 -9.2290 16 6 0.3516 0.9537 -8.7655 17 6 0.1248 1.3821 -7.3114 18 6 3.5674 -0.8479 -1.1703 19 6 3.9569 -1.6656 0.0632 20 6 3.4652 -0.9469 1.3235 21 7 2.0226 -0.6996 1.1944 22 6 1.1539 -1.1128 2.1689 23 1 0.1362 -1.3673 1.9125 24 6 1.5814 -1.2047 3.4863 25 7 2.7048 -0.6265 3.8555 26 14 0.5624 -2.1488 4.7353 27 1 0.4328 -3.5628 4.3008 28 1 1.2310 -2.0969 6.0603 29 1 -0.7866 -1.5366 4.8377 30 1 -0.3633 -1.0277 0.0063 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5083 -0.8930 33 1 1.5099 0.9817 -2.3840 34 1 1.7765 1.0648 -5.0061 35 1 -0.9582 -0.2928 -4.4470 36 1 -0.6279 1.4669 -4.7575 37 1 1.8619 -0.5763 -6.8236 38 1 0.8083 -1.7415 -5.9115 39 1 -1.4555 -1.6042 -6.5004 40 1 -2.2734 -0.0999 -6.9945 41 1 -1.8927 -1.4989 -8.9759 42 1 -0.1609 -1.6293 -8.5847 43 1 0.4989 1.8375 -9.3863 44 1 1.2343 0.3170 -8.8237 45 1 -0.7091 2.0823 -7.2628 46 1 1.0253 1.8595 -6.9249 47 1 4.0061 0.1476 -1.0995 48 1 3.9376 -1.3447 -2.0672 49 1 5.0413 -1.7694 0.1034 50 1 3.4985 -2.6527 0.0050 51 1 3.6520 -1.5718 2.1969 52 1 3.9904 0.0020 1.4315 53 1 3.0033 -0.6904 4.7763 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994206227.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:45 Heat of formation + Delta-G solvation = -75.281880 kcal Electronic energy + Delta-G solvation = -30573.625019 eV Core-core repulsion = 26637.854345 eV Total energy + Delta-G solvation = -3935.770674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.98763 -40.58508 -39.23749 -37.89245 -35.85209 -34.25570 -33.42168 -32.29431 -31.98613 -30.84209 -28.00385 -26.98982 -26.90939 -26.00379 -24.64487 -23.89154 -22.76376 -22.32196 -21.28184 -20.69573 -19.15897 -18.40719 -18.10182 -17.33063 -16.93011 -16.92152 -16.64540 -16.39886 -15.79592 -15.74038 -15.61114 -15.47342 -14.97053 -14.91519 -14.72689 -14.53571 -14.27488 -14.17222 -13.53282 -13.36023 -13.25845 -13.10197 -12.82136 -12.74625 -12.69974 -12.54488 -12.50145 -12.37745 -12.19059 -12.09560 -12.01452 -11.83048 -11.78083 -11.61347 -11.42006 -11.30536 -11.18406 -10.96923 -10.62135 -10.52700 -10.24871 -9.96039 -8.65865 -7.85982 -5.32023 1.45955 1.48787 1.54554 1.70009 2.22729 2.54219 3.01633 3.29365 3.41480 3.53555 3.56710 3.65953 3.72542 3.88387 3.99175 4.06168 4.14309 4.19391 4.22448 4.31465 4.35692 4.41842 4.52894 4.53596 4.58421 4.61589 4.74889 4.76517 4.80730 4.83111 4.85458 4.88248 4.91981 4.94790 5.00921 5.02646 5.11204 5.12447 5.15581 5.21141 5.23948 5.29379 5.39915 5.44599 5.49901 5.53497 5.63035 5.69284 5.76438 6.32571 6.41235 6.67948 7.15800 7.36744 7.86411 8.37590 9.20689 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024808 B = 0.002357 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.411142 B =11877.557379 C =12363.065274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.165 3.835 3 H 0.034 0.966 4 C 0.147 3.853 5 H 0.052 0.948 6 N -0.706 5.706 7 C 0.518 3.482 8 O -0.589 6.589 9 C -0.128 4.128 10 C -0.107 4.107 11 C -0.076 4.076 12 C -0.110 4.110 13 C -0.138 4.138 14 C 0.060 3.940 15 O -0.404 6.404 16 C 0.055 3.945 17 C -0.126 4.126 18 C -0.108 4.108 19 C -0.130 4.130 20 C 0.176 3.824 21 N -0.601 5.601 22 C -0.254 4.254 23 H 0.071 0.929 24 C -0.049 4.049 25 N -0.933 5.933 26 Si 0.961 3.039 27 H -0.283 1.283 28 H -0.295 1.295 29 H -0.274 1.274 30 H 0.038 0.962 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.412 0.588 34 H 0.140 0.860 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.050 0.950 43 H 0.107 0.893 44 H 0.053 0.947 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.066 0.934 48 H 0.052 0.948 49 H 0.071 0.929 50 H 0.041 0.959 51 H 0.055 0.945 52 H 0.005 0.995 53 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.627 6.499 -24.628 25.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.059 3.941 3 H 0.051 0.949 4 C 0.040 3.960 5 H 0.070 0.930 6 N -0.357 5.357 7 C 0.306 3.694 8 O -0.470 6.470 9 C -0.148 4.148 10 C -0.144 4.144 11 C -0.076 4.076 12 C -0.147 4.147 13 C -0.176 4.176 14 C -0.016 4.016 15 O -0.323 6.323 16 C -0.021 4.021 17 C -0.164 4.164 18 C -0.147 4.147 19 C -0.170 4.170 20 C 0.050 3.950 21 N -0.325 5.325 22 C -0.384 4.384 23 H 0.089 0.911 24 C -0.244 4.244 25 N -0.580 5.580 26 Si 0.789 3.211 27 H -0.209 1.209 28 H -0.221 1.221 29 H -0.200 1.200 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.249 0.751 34 H 0.158 0.842 35 H 0.091 0.909 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.118 0.882 42 H 0.068 0.932 43 H 0.125 0.875 44 H 0.071 0.929 45 H 0.098 0.902 46 H 0.111 0.889 47 H 0.085 0.915 48 H 0.071 0.929 49 H 0.090 0.910 50 H 0.060 0.940 51 H 0.074 0.926 52 H 0.023 0.977 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.552 5.738 -24.646 25.711 hybrid contribution -0.012 -0.550 1.671 1.759 sum -4.564 5.188 -22.974 23.991 Atomic orbital electron populations 1.21719 0.94471 1.00907 1.01310 1.20719 0.94257 0.93446 0.85720 0.94859 1.21243 0.94659 0.95427 0.84717 0.92969 1.45968 1.69662 1.12758 1.07329 1.21166 0.75321 0.87638 0.85268 1.90671 1.52319 1.17551 1.86422 1.22861 0.99873 1.00590 0.91516 1.22903 0.92593 1.03369 0.95569 1.21508 0.95165 0.96274 0.94628 1.22855 0.98298 0.98425 0.95164 1.22091 0.98459 1.00413 0.96606 1.22645 1.01322 0.86032 0.91619 1.87865 1.48752 1.36377 1.59303 1.22761 0.87769 0.96636 0.94939 1.21979 1.03625 0.95937 0.94850 1.21670 0.95568 1.00245 0.97190 1.22026 1.00247 0.98688 0.96041 1.20642 0.83205 0.96142 0.95007 1.44278 1.03135 1.65898 1.19199 1.19406 0.95130 1.37086 0.86787 0.91102 1.25758 0.99051 1.00941 0.98689 1.70154 1.24860 1.46082 1.16858 0.85441 0.78501 0.78906 0.78208 1.20949 1.22077 1.19975 0.94328 0.93313 0.90492 0.75113 0.84203 0.90946 0.88315 0.90340 0.91026 0.91143 0.90706 0.88185 0.93162 0.87504 0.92912 0.90240 0.88897 0.91501 0.92884 0.91008 0.94008 0.92631 0.97736 0.94203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 7.84 71.98 0.56 -3.92 16 2 C 0.17 6.43 3.03 44.98 0.14 6.57 16 3 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 4 C 0.15 5.12 1.99 45.07 0.09 5.21 16 5 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 6 N -0.71 -18.31 4.58 -442.17 -2.02 -20.33 16 7 C 0.52 13.83 7.32 87.66 0.64 14.47 16 8 O -0.59 -21.53 15.57 -3.03 -0.05 -21.58 16 9 C -0.13 -2.14 3.79 -10.96 -0.04 -2.19 16 10 C -0.11 -1.54 6.80 31.05 0.21 -1.33 16 11 C -0.08 -1.02 0.77 -52.03 -0.04 -1.06 16 12 C -0.11 -1.91 6.36 30.99 0.20 -1.71 16 13 C -0.14 -1.99 5.34 30.63 0.16 -1.82 16 14 C 0.06 0.87 6.78 72.07 0.49 1.36 16 15 O -0.40 -6.77 10.72 -148.98 -1.60 -8.36 16 16 C 0.06 0.65 6.78 72.07 0.49 1.14 16 17 C -0.13 -1.30 5.23 30.63 0.16 -1.14 16 18 C -0.11 -3.77 5.46 30.62 0.17 -3.60 16 19 C -0.13 -5.17 6.08 30.67 0.19 -4.98 16 20 C 0.18 8.48 5.29 86.36 0.46 8.93 16 21 N -0.60 -29.48 2.99 -675.22 -2.02 -31.50 16 22 C -0.25 -13.64 8.61 84.03 0.72 -12.91 16 23 H 0.07 3.71 6.20 -2.91 -0.02 3.69 16 24 C -0.05 -2.71 4.96 84.86 0.42 -2.29 16 25 N -0.93 -54.52 11.14 21.65 0.24 -54.28 16 26 Si 0.96 44.85 29.58 68.60 2.03 46.88 16 27 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 28 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 29 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 30 H 0.04 1.47 7.40 -2.39 -0.02 1.45 16 31 H 0.05 1.86 7.66 -2.39 -0.02 1.84 16 32 H 0.08 2.09 7.78 -2.39 -0.02 2.08 16 33 H 0.41 8.03 8.60 -92.71 -0.80 7.23 16 34 H 0.14 1.56 7.65 -2.39 -0.02 1.55 16 35 H 0.07 1.31 8.05 -2.38 -0.02 1.29 16 36 H 0.10 1.03 8.09 -2.39 -0.02 1.01 16 37 H 0.08 1.21 7.63 -2.39 -0.02 1.19 16 38 H 0.07 1.65 7.33 -2.39 -0.02 1.63 16 39 H 0.07 1.10 8.04 -2.39 -0.02 1.08 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.05 0.72 8.12 -2.39 -0.02 0.70 16 43 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.05 0.60 7.68 -2.39 -0.02 0.58 16 45 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.09 0.68 7.35 -2.38 -0.02 0.66 16 47 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 48 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 50 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.06 3.05 6.06 -2.39 -0.01 3.04 16 52 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 53 H 0.25 14.19 8.31 -92.70 -0.77 13.41 16 Total: -1.00 -68.98 399.28 1.68 -67.30 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 0.09 Total: 21.16 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 5.01 Total: 0.72 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -3.80 Total: -106.12 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -1.64 Total: -29.94 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -68.98 1.68 -67.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994206227.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.979 kcal (2) G-P(sol) polarization free energy of solvation -68.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds