Wall clock time and date at job start Tue Mar 31 2020 21:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.70247 * 2 1 4 4 C 1.53201 * 109.58222 * 120.35084 * 2 1 3 5 5 H 1.08992 * 109.49495 * 294.37727 * 4 2 1 6 6 N 1.46500 * 109.52078 * 54.45510 * 4 2 1 7 7 C 1.34775 * 120.00029 * 204.91643 * 6 4 2 8 8 O 1.21284 * 119.99579 * 0.02562 * 7 6 4 9 9 C 1.50697 * 120.00110 * 180.02562 * 7 6 4 10 10 C 1.53868 * 113.60396 * 277.57867 * 9 7 6 11 11 C 1.53306 * 86.94949 * 220.33928 * 10 9 7 12 12 C 1.53330 * 87.54934 * 25.17791 * 11 10 9 13 13 C 1.52827 * 113.64344 * 139.94381 * 11 10 9 14 14 C 1.53262 * 108.87725 * 184.13712 * 13 11 10 15 15 O 1.42896 * 109.33417 * 304.69582 * 14 13 11 16 16 C 1.42900 * 114.35891 * 62.99268 * 15 14 13 17 17 C 1.52826 * 113.64168 * 270.41205 * 11 10 9 18 18 C 1.53038 * 109.31208 * 174.42272 * 4 2 1 19 19 C 1.53044 * 109.53559 * 298.63687 * 18 4 2 20 20 C 1.53196 * 109.31493 * 61.36747 * 19 18 4 21 21 N 1.46921 * 108.77249 * 305.36071 * 20 19 18 22 22 C 1.36935 * 120.63111 * 233.60683 * 21 20 19 23 23 H 1.08004 * 119.99816 * 150.17352 * 22 21 20 24 24 C 1.38811 * 120.00191 * 330.17234 * 22 21 20 25 25 N 1.31618 * 119.99673 * 344.48923 * 24 22 21 26 26 Si 1.86796 * 119.99901 * 164.48555 * 24 22 21 27 27 H 1.48506 * 109.47161 * 90.00485 * 26 24 22 28 28 H 1.48499 * 109.47261 * 210.00102 * 26 24 22 29 29 H 1.48501 * 109.47396 * 330.00350 * 26 24 22 30 30 H 1.08993 * 109.47040 * 299.65348 * 1 2 3 31 31 H 1.09005 * 109.46346 * 59.64471 * 1 2 3 32 32 H 1.08996 * 109.47045 * 179.64060 * 1 2 3 33 33 H 0.97003 * 119.99952 * 24.92344 * 6 4 2 34 34 H 1.09001 * 112.84054 * 48.84579 * 9 7 6 35 35 H 1.09003 * 113.63606 * 334.85737 * 10 9 7 36 36 H 1.09001 * 113.63638 * 105.81989 * 10 9 7 37 37 H 1.08996 * 113.63175 * 220.29976 * 12 11 10 38 38 H 1.09003 * 113.63758 * 89.33870 * 12 11 10 39 39 H 1.08994 * 109.57472 * 303.95964 * 13 11 10 40 40 H 1.09002 * 109.56648 * 64.32414 * 13 11 10 41 41 H 1.09000 * 109.49454 * 184.73982 * 14 13 11 42 42 H 1.09003 * 109.49321 * 64.65310 * 14 13 11 43 43 H 1.08997 * 109.48996 * 177.05854 * 16 15 14 44 44 H 1.08994 * 109.49356 * 56.96307 * 16 15 14 45 45 H 1.09001 * 109.56303 * 295.67986 * 17 11 10 46 46 H 1.09001 * 109.57044 * 55.91689 * 17 11 10 47 47 H 1.09002 * 109.46084 * 58.65026 * 18 4 2 48 48 H 1.08997 * 109.46300 * 178.62007 * 18 4 2 49 49 H 1.09006 * 109.49426 * 181.31618 * 19 18 4 50 50 H 1.08998 * 109.49854 * 301.41049 * 19 18 4 51 51 H 1.08997 * 109.58594 * 65.14694 * 20 19 18 52 52 H 1.08999 * 109.58228 * 185.57374 * 20 19 18 53 53 H 0.97004 * 119.99759 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 1.2456 5 1 1.7659 -0.1667 2.1368 6 7 1.4513 -2.0679 1.3081 7 6 1.3301 -2.6964 2.4941 8 8 1.7108 -2.1537 3.5097 9 6 0.7214 -4.0735 2.5583 10 6 -0.8172 -4.0671 2.5715 11 6 -0.7314 -5.1909 3.6107 12 6 0.6550 -4.6518 3.9825 13 6 -1.7587 -5.0656 4.7352 14 6 -1.5101 -6.1775 5.7602 15 8 -1.5352 -7.4443 5.0994 16 6 -0.5098 -7.6184 4.1195 17 6 -0.6998 -6.5908 2.9983 18 6 3.5674 -0.8480 1.1704 19 6 3.9569 -1.6658 -0.0632 20 6 3.4651 -0.9471 -1.3236 21 7 2.0227 -0.6997 -1.1944 22 6 1.1539 -1.1132 -2.1687 23 1 0.1398 -1.3802 -1.9101 24 6 1.5764 -1.1892 -3.4888 25 7 2.6871 -0.5883 -3.8598 26 14 0.5688 -2.1443 -4.7384 27 1 -0.4251 -1.2388 -5.3691 28 1 1.4690 -2.6954 -5.7830 29 1 -0.1387 -3.2579 -4.0568 30 1 -0.3633 0.5084 0.8930 31 1 -0.3632 0.5194 -0.8869 32 1 -0.3633 -1.0276 -0.0064 33 1 1.1466 -2.5018 0.4958 34 1 1.1500 -4.7600 1.8281 35 1 -1.2470 -3.1440 2.9604 36 1 -1.2636 -4.3783 1.6270 37 1 1.3912 -5.4329 4.1719 38 1 0.6332 -3.8908 4.7627 39 1 -1.6548 -4.0940 5.2181 40 1 -2.7635 -5.1656 4.3246 41 1 -2.2881 -6.1497 6.5230 42 1 -0.5364 -6.0303 6.2276 43 1 -0.5701 -8.6246 3.7048 44 1 0.4656 -7.4736 4.5841 45 1 -1.6397 -6.7842 2.4812 46 1 0.1270 -6.6616 2.2917 47 1 4.0061 0.1473 1.0994 48 1 3.9377 -1.3448 2.0671 49 1 5.0412 -1.7697 -0.1033 50 1 3.4983 -2.6529 -0.0049 51 1 3.9904 0.0019 -1.4315 52 1 3.6520 -1.5720 -2.1969 53 1 2.9826 -0.6417 -4.7822 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994206231.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:54 Heat of formation + Delta-G solvation = -71.231400 kcal Electronic energy + Delta-G solvation = -31285.389812 eV Core-core repulsion = 27349.794779 eV Total energy + Delta-G solvation = -3935.595032 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.99164 -40.66403 -39.17872 -37.84334 -35.55748 -34.00838 -33.38505 -32.27201 -31.99173 -30.98048 -27.98330 -26.96645 -26.86163 -26.02592 -24.64297 -23.84569 -22.98000 -22.36078 -21.05868 -20.25937 -19.15810 -18.28366 -18.24912 -17.13970 -16.92252 -16.91242 -16.47018 -16.44488 -15.87554 -15.75303 -15.66099 -15.31471 -14.96078 -14.73927 -14.65954 -14.56522 -14.22527 -14.13167 -13.56793 -13.51992 -13.09858 -12.96473 -12.87828 -12.75018 -12.67960 -12.49864 -12.41736 -12.35832 -12.21545 -12.18846 -12.02547 -11.91731 -11.67424 -11.42677 -11.36130 -11.30189 -11.02663 -10.97080 -10.60026 -10.48889 -10.24535 -9.85148 -8.59596 -7.80902 -5.27677 1.50150 1.52961 1.60207 1.74687 2.41011 2.55130 3.01472 3.35854 3.42750 3.54662 3.59473 3.60956 3.74817 3.95040 4.05422 4.08553 4.13945 4.20726 4.22507 4.32381 4.39819 4.42412 4.52401 4.57964 4.58550 4.66531 4.73878 4.77859 4.80556 4.82428 4.85438 4.94415 4.94670 4.99011 5.00085 5.04790 5.11466 5.13555 5.15440 5.20828 5.23727 5.34704 5.40920 5.46355 5.51124 5.55640 5.69696 5.75962 5.80819 6.32303 6.45322 6.76889 7.20445 7.39856 7.90388 8.44354 9.25918 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.003211 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.306183 B = 8717.294822 C = 9743.307506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.157 3.843 3 H 0.026 0.974 4 C 0.143 3.857 5 H 0.075 0.925 6 N -0.696 5.696 7 C 0.519 3.481 8 O -0.588 6.588 9 C -0.135 4.135 10 C -0.107 4.107 11 C -0.074 4.074 12 C -0.103 4.103 13 C -0.136 4.136 14 C 0.060 3.940 15 O -0.403 6.403 16 C 0.059 3.941 17 C -0.130 4.130 18 C -0.115 4.115 19 C -0.124 4.124 20 C 0.180 3.820 21 N -0.595 5.595 22 C -0.247 4.247 23 H 0.081 0.919 24 C -0.049 4.049 25 N -0.937 5.937 26 Si 0.958 3.042 27 H -0.291 1.291 28 H -0.301 1.301 29 H -0.264 1.264 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.408 0.592 34 H 0.124 0.876 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.052 0.948 43 H 0.105 0.895 44 H 0.054 0.946 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.063 0.937 48 H 0.054 0.946 49 H 0.060 0.940 50 H 0.054 0.946 51 H -0.008 1.008 52 H 0.055 0.945 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.687 -11.408 15.802 20.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.050 3.950 3 H 0.044 0.956 4 C 0.036 3.964 5 H 0.093 0.907 6 N -0.346 5.346 7 C 0.307 3.693 8 O -0.469 6.469 9 C -0.156 4.156 10 C -0.144 4.144 11 C -0.074 4.074 12 C -0.140 4.140 13 C -0.174 4.174 14 C -0.016 4.016 15 O -0.322 6.322 16 C -0.018 4.018 17 C -0.167 4.167 18 C -0.153 4.153 19 C -0.163 4.163 20 C 0.054 3.946 21 N -0.319 5.319 22 C -0.377 4.377 23 H 0.098 0.902 24 C -0.244 4.244 25 N -0.583 5.583 26 Si 0.787 3.213 27 H -0.219 1.219 28 H -0.228 1.228 29 H -0.188 1.188 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.244 0.756 34 H 0.142 0.858 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.071 0.929 43 H 0.123 0.877 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.104 0.896 47 H 0.081 0.919 48 H 0.072 0.928 49 H 0.079 0.921 50 H 0.073 0.927 51 H 0.010 0.990 52 H 0.073 0.927 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.501 -11.143 16.383 20.852 hybrid contribution 0.189 0.277 -1.697 1.730 sum -6.312 -10.866 14.686 19.328 Atomic orbital electron populations 1.21682 0.94163 1.01832 1.00663 1.20832 0.94562 0.93223 0.86337 0.95642 1.21258 0.92742 0.84112 0.98277 0.90724 1.45994 1.61170 1.17919 1.09511 1.20954 0.77542 0.88209 0.82628 1.90620 1.51992 1.68692 1.35638 1.22822 0.98213 0.93095 1.01445 1.22851 0.92327 0.98942 1.00321 1.21452 0.95228 0.94838 0.95900 1.22828 0.96826 0.99647 0.94732 1.22089 0.99233 0.99651 0.96422 1.22671 1.02111 0.82560 0.94282 1.87862 1.54081 1.35585 1.54716 1.22714 0.90653 0.99774 0.88640 1.21982 1.03684 0.92615 0.98432 1.21707 0.95760 1.00311 0.97550 1.21938 0.99621 0.99087 0.95686 1.20561 0.83400 0.95654 0.94982 1.44323 1.02882 1.65365 1.19319 1.19477 0.95610 1.36243 0.86351 0.90177 1.25788 0.98916 1.00868 0.98866 1.70185 1.25933 1.45723 1.16483 0.85415 0.77772 0.78984 0.79080 1.21864 1.22831 1.18807 0.91988 0.93530 0.92216 0.75584 0.85817 0.90318 0.89581 0.90548 0.90226 0.90595 0.90868 0.87918 0.92932 0.87671 0.92731 0.90568 0.89628 0.91863 0.92775 0.92148 0.92678 0.98973 0.92685 0.94502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 7.73 71.98 0.56 -3.72 16 2 C 0.16 5.99 3.20 44.98 0.14 6.13 16 3 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 4 C 0.14 4.84 2.32 45.07 0.10 4.95 16 5 H 0.07 2.57 7.58 -2.39 -0.02 2.55 16 6 N -0.70 -21.35 3.47 -442.16 -1.53 -22.88 16 7 C 0.52 15.27 7.32 87.66 0.64 15.91 16 8 O -0.59 -21.12 15.56 -3.04 -0.05 -21.17 16 9 C -0.13 -2.91 3.80 -10.96 -0.04 -2.95 16 10 C -0.11 -2.01 6.78 30.99 0.21 -1.80 16 11 C -0.07 -1.23 0.77 -52.08 -0.04 -1.27 16 12 C -0.10 -2.02 6.36 30.99 0.20 -1.83 16 13 C -0.14 -2.15 5.33 30.62 0.16 -1.98 16 14 C 0.06 0.92 6.78 72.07 0.49 1.41 16 15 O -0.40 -7.47 10.72 -148.98 -1.60 -9.06 16 16 C 0.06 0.85 6.78 72.07 0.49 1.34 16 17 C -0.13 -1.88 5.23 30.63 0.16 -1.72 16 18 C -0.11 -3.91 5.58 30.62 0.17 -3.74 16 19 C -0.12 -4.54 5.93 30.67 0.18 -4.36 16 20 C 0.18 8.21 5.28 86.36 0.46 8.66 16 21 N -0.59 -26.80 2.64 -675.20 -1.79 -28.58 16 22 C -0.25 -12.04 8.58 84.03 0.72 -11.32 16 23 H 0.08 3.69 6.23 -2.91 -0.02 3.67 16 24 C -0.05 -2.56 4.94 84.86 0.42 -2.14 16 25 N -0.94 -53.12 11.23 21.65 0.24 -52.88 16 26 Si 0.96 42.20 29.58 68.60 2.03 44.23 16 27 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 28 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 29 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.73 7.67 -2.38 -0.02 1.71 16 32 H 0.06 1.95 6.37 -2.39 -0.02 1.94 16 33 H 0.41 12.76 7.77 -92.71 -0.72 12.04 16 34 H 0.12 2.35 7.65 -2.39 -0.02 2.33 16 35 H 0.08 1.63 8.05 -2.39 -0.02 1.61 16 36 H 0.09 1.49 8.09 -2.39 -0.02 1.47 16 37 H 0.08 1.37 7.63 -2.39 -0.02 1.36 16 38 H 0.08 1.87 7.31 -2.39 -0.02 1.85 16 39 H 0.08 1.20 8.04 -2.39 -0.02 1.18 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.05 0.78 8.12 -2.39 -0.02 0.76 16 43 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.05 0.75 7.67 -2.39 -0.02 0.73 16 45 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.09 1.12 7.35 -2.39 -0.02 1.10 16 47 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 50 H 0.05 1.99 7.53 -2.39 -0.02 1.98 16 51 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 52 H 0.05 2.85 6.15 -2.39 -0.01 2.84 16 53 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -61.39 396.18 2.50 -58.89 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: 0.17 Total: 29.88 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 5.02 Total: 1.58 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -3.08 Total: -104.34 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -1.64 Total: -30.23 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -61.39 2.50 -58.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994206231.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.341 kcal (2) G-P(sol) polarization free energy of solvation -61.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds