Wall clock time and date at job start Tue Mar 31 2020 21:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.48932 * 2 1 4 4 O 1.42905 * 109.47670 * 120.02623 * 2 1 3 5 5 C 1.42909 * 114.09105 * 181.14276 * 4 2 1 6 6 C 1.53090 * 109.41514 * 298.84017 * 5 4 2 7 7 C 1.53176 * 109.16187 * 57.61202 * 6 5 4 8 8 C 1.53092 * 109.47997 * 239.96960 * 2 1 3 9 9 H 1.09007 * 109.57476 * 302.34374 * 8 2 1 10 10 C 1.50694 * 109.52352 * 62.50245 * 8 2 1 11 11 O 1.21278 * 120.00221 * 359.68305 * 10 8 2 12 12 N 1.34778 * 119.99732 * 179.68531 * 10 8 2 13 13 C 1.46504 * 119.99817 * 179.97438 * 12 10 8 14 14 C 1.52998 * 115.56140 * 180.10381 * 13 12 10 15 15 C 1.53045 * 109.45925 * 159.33750 * 14 13 12 16 16 C 1.53190 * 109.31254 * 178.60118 * 15 14 13 17 17 N 1.46921 * 108.76445 * 54.65741 * 16 15 14 18 18 C 1.36942 * 120.63380 * 126.36443 * 17 16 15 19 19 H 1.07996 * 120.00005 * 207.98895 * 18 17 16 20 20 C 1.38805 * 119.99543 * 27.97834 * 18 17 16 21 21 N 1.31621 * 120.00526 * 17.50586 * 20 18 17 22 22 Si 1.86806 * 120.00084 * 197.50668 * 20 18 17 23 23 H 1.48496 * 109.47129 * 94.06499 * 22 20 18 24 24 H 1.48499 * 109.47301 * 214.07208 * 22 20 18 25 25 H 1.48502 * 109.46673 * 334.07136 * 22 20 18 26 26 C 1.46932 * 118.74128 * 306.38019 * 17 16 15 27 27 C 1.53040 * 109.45791 * 39.28522 * 14 13 12 28 28 C 1.52998 * 117.49948 * 325.79723 * 13 12 10 29 29 C 1.53003 * 60.00199 * 107.48769 * 28 13 12 30 30 H 1.09002 * 109.47052 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47257 * 300.03064 * 1 2 3 32 32 H 1.08996 * 109.47045 * 60.03450 * 1 2 3 33 33 H 1.08999 * 109.47521 * 178.85787 * 5 4 2 34 34 H 1.09001 * 109.48362 * 58.82536 * 5 4 2 35 35 H 1.08999 * 109.52274 * 297.70371 * 6 5 4 36 36 H 1.08998 * 109.52160 * 177.52102 * 6 5 4 37 37 H 1.09008 * 109.53757 * 183.15214 * 7 6 5 38 38 H 1.08997 * 109.54632 * 62.88618 * 7 6 5 39 39 H 0.96994 * 120.00427 * 359.97438 * 12 10 8 40 40 H 1.08997 * 109.46079 * 279.31017 * 14 13 12 41 41 H 1.08990 * 109.49811 * 298.57100 * 15 14 13 42 42 H 1.09003 * 109.49282 * 58.66497 * 15 14 13 43 43 H 1.09011 * 109.59838 * 294.87087 * 16 15 14 44 44 H 1.08994 * 109.58546 * 174.44180 * 16 15 14 45 45 H 0.96999 * 120.00521 * 179.97438 * 21 20 18 46 46 H 1.08991 * 109.59055 * 293.82619 * 26 17 16 47 47 H 1.08997 * 109.58806 * 173.39161 * 26 17 16 48 48 H 1.08999 * 109.49979 * 301.33463 * 27 14 13 49 49 H 1.08996 * 109.49590 * 61.43774 * 27 14 13 50 50 H 1.08998 * 117.49766 * 214.98221 * 28 13 12 51 51 H 1.09004 * 117.50192 * 359.97438 * 28 13 12 52 52 H 1.09002 * 117.49511 * 252.51157 * 29 28 13 53 53 H 1.08997 * 117.51548 * 107.47889 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 8 2.0065 -0.6742 1.1665 5 6 3.4307 -0.7092 1.2791 6 6 4.0176 -1.4600 0.0810 7 6 3.5711 -0.7709 -1.2121 8 6 2.0405 -0.7223 -1.2495 9 1 1.6443 -1.7376 -1.2720 10 6 1.5903 0.0214 -2.4804 11 8 0.9213 1.0270 -2.3706 12 7 1.9309 -0.4311 -3.7034 13 6 1.4927 0.2915 -4.9001 14 6 1.9343 -0.3123 -6.2347 15 6 1.0226 0.1992 -7.3524 16 6 1.4891 -0.3797 -8.6917 17 7 1.5436 -1.8437 -8.5804 18 6 0.8837 -2.6370 -9.4807 19 1 0.5383 -3.6167 -9.1855 20 6 0.6587 -2.1817 -10.7725 21 7 1.3539 -1.1683 -11.2436 22 14 -0.6309 -3.0073 -11.8425 23 1 -1.9179 -2.2769 -11.7191 24 1 -0.1848 -2.9887 -13.2588 25 1 -0.8152 -4.4129 -11.3999 26 6 2.3194 -2.4406 -7.4846 27 6 1.8437 -1.8382 -6.1587 28 6 0.1241 0.9738 -4.8518 29 6 1.4007 1.8162 -4.8105 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5143 0.8896 32 1 -0.3633 0.5133 -0.8903 33 1 3.7099 -1.2201 2.2006 34 1 3.8193 0.3091 1.2958 35 1 3.6613 -2.4901 0.0865 36 1 5.1058 -1.4498 0.1422 37 1 3.9392 -1.3328 -2.0705 38 1 3.9689 0.2435 -1.2408 39 1 2.4662 -1.2352 -3.7913 40 1 2.9634 -0.0196 -6.4429 41 1 -0.0029 -0.1145 -7.1576 42 1 1.0695 1.2876 -7.3906 43 1 2.4803 0.0057 -8.9313 44 1 0.7862 -0.0988 -9.4759 45 1 1.1969 -0.8503 -12.1465 46 1 3.3780 -2.2232 -7.6256 47 1 2.1641 -3.5194 -7.4723 48 1 2.4751 -2.2002 -5.3473 49 1 0.8104 -2.1325 -5.9754 50 1 -0.4617 0.9924 -5.7708 51 1 -0.4505 0.8847 -3.9298 52 1 1.6662 2.2815 -3.8612 53 1 1.6551 2.3889 -5.7023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000141131.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:47 Heat of formation + Delta-G solvation = -59.199604 kcal Electronic energy + Delta-G solvation = -30923.220700 eV Core-core repulsion = 26988.147406 eV Total energy + Delta-G solvation = -3935.073295 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.98060 -40.46694 -39.19671 -37.41006 -35.14426 -34.54923 -33.76407 -33.52076 -31.90662 -31.39054 -28.95491 -27.39746 -25.97889 -24.72154 -23.82691 -23.46031 -23.32666 -22.23818 -21.38229 -20.90105 -20.07837 -18.85443 -18.49896 -17.44934 -16.92987 -16.67637 -16.49497 -16.13609 -15.82568 -15.75529 -15.47346 -15.31646 -15.21826 -14.83903 -14.62934 -14.47841 -14.14767 -14.00102 -13.90849 -13.51751 -13.23445 -13.12155 -13.03302 -12.97048 -12.58522 -12.48045 -12.40977 -12.34247 -12.32171 -11.99373 -11.93669 -11.92139 -11.77496 -11.65633 -11.43400 -11.33127 -11.16663 -10.89058 -10.59619 -10.52991 -10.32501 -9.55662 -8.66453 -7.86675 -5.31049 1.46234 1.48371 1.53367 1.56636 1.99570 2.51683 2.84023 2.97619 3.27723 3.50144 3.59840 3.64728 3.71234 3.75036 3.84447 3.98238 4.02109 4.12881 4.15743 4.26462 4.31830 4.38166 4.45435 4.48093 4.56702 4.59888 4.69942 4.73801 4.77088 4.81940 4.85886 4.88076 4.89742 4.95024 5.03023 5.06217 5.06990 5.09622 5.15300 5.24047 5.28094 5.30079 5.34945 5.36546 5.42771 5.54602 5.62250 5.67572 5.79071 6.25168 6.40681 6.54580 7.16618 7.23061 7.88948 8.39514 9.19527 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022512 B = 0.002510 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.465232 B =11152.619163 C =11515.857171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.113 3.887 3 H 0.054 0.946 4 O -0.394 6.394 5 C 0.049 3.951 6 C -0.149 4.149 7 C -0.114 4.114 8 C -0.131 4.131 9 H 0.115 0.885 10 C 0.520 3.480 11 O -0.557 6.557 12 N -0.682 5.682 13 C 0.113 3.887 14 C -0.032 4.032 15 C -0.118 4.118 16 C 0.177 3.823 17 N -0.610 5.610 18 C -0.260 4.260 19 H 0.066 0.934 20 C -0.051 4.051 21 N -0.934 5.934 22 Si 0.962 3.038 23 H -0.288 1.288 24 H -0.296 1.296 25 H -0.268 1.268 26 C 0.140 3.860 27 C -0.111 4.111 28 C -0.182 4.182 29 C -0.172 4.172 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.414 0.586 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.065 0.935 43 H -0.002 1.002 44 H 0.051 0.949 45 H 0.249 0.751 46 H 0.018 0.982 47 H 0.054 0.946 48 H 0.085 0.915 49 H 0.053 0.947 50 H 0.095 0.905 51 H 0.094 0.906 52 H 0.097 0.903 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.618 1.125 24.470 25.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.055 3.945 3 H 0.072 0.928 4 O -0.313 6.313 5 C -0.027 4.027 6 C -0.186 4.186 7 C -0.152 4.152 8 C -0.152 4.152 9 H 0.133 0.867 10 C 0.308 3.692 11 O -0.436 6.436 12 N -0.332 5.332 13 C 0.025 3.975 14 C -0.051 4.051 15 C -0.157 4.157 16 C 0.052 3.948 17 N -0.334 5.334 18 C -0.390 4.390 19 H 0.083 0.917 20 C -0.246 4.246 21 N -0.581 5.581 22 Si 0.791 3.209 23 H -0.215 1.215 24 H -0.222 1.222 25 H -0.192 1.192 26 C 0.015 3.985 27 C -0.150 4.150 28 C -0.220 4.220 29 C -0.210 4.210 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.253 0.747 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.016 0.984 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.036 0.964 47 H 0.073 0.927 48 H 0.103 0.897 49 H 0.072 0.928 50 H 0.113 0.887 51 H 0.112 0.888 52 H 0.116 0.884 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.043 1.765 24.548 25.123 hybrid contribution -0.289 -0.356 -1.385 1.459 sum 4.754 1.409 23.163 23.688 Atomic orbital electron populations 1.21919 0.92921 1.02617 1.03291 1.21674 0.95351 0.94163 0.83344 0.92848 1.87951 1.22667 1.78118 1.42578 1.22837 0.79897 1.00324 0.99692 1.22175 1.02512 1.00385 0.93539 1.21648 0.91240 1.02155 1.00150 1.21990 0.99213 1.01665 0.92371 0.86734 1.20742 0.78994 0.84771 0.84705 1.90625 1.39511 1.26604 1.86873 1.45326 1.54477 1.29738 1.03683 1.20685 0.99668 0.91230 0.85868 1.20501 0.99341 0.95521 0.89787 1.22101 0.98831 0.99398 0.95407 1.20576 0.97116 0.82886 0.94257 1.44320 1.57115 1.01762 1.30214 1.19510 1.28529 1.00207 0.90741 0.91665 1.25745 1.01326 0.99885 0.97640 1.70178 1.41293 1.30408 1.16189 0.85324 0.79171 0.78659 0.77748 1.21509 1.22240 1.19240 1.21073 0.93233 0.96558 0.87655 1.21872 1.01357 0.94132 0.97671 1.23425 0.91513 1.04077 1.03013 1.23316 1.01600 0.92981 1.03099 0.92130 0.91990 0.90211 0.87134 0.92945 0.90318 0.88443 0.89214 0.91657 0.74730 0.90737 0.92800 0.91598 0.98432 0.93083 0.94182 0.96416 0.92702 0.89656 0.92841 0.88690 0.88769 0.88438 0.88503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.28 71.98 0.67 -2.41 16 2 C 0.11 2.17 2.40 30.63 0.07 2.25 16 3 H 0.05 1.14 8.04 -2.39 -0.02 1.13 16 4 O -0.39 -7.37 10.41 -148.98 -1.55 -8.92 16 5 C 0.05 0.60 6.84 72.01 0.49 1.09 16 6 C -0.15 -1.42 6.14 30.68 0.19 -1.23 16 7 C -0.11 -1.38 5.18 30.71 0.16 -1.22 16 8 C -0.13 -2.16 2.23 -11.45 -0.03 -2.18 16 9 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 10 C 0.52 11.29 6.58 87.66 0.58 11.86 16 11 O -0.56 -15.32 9.29 -3.02 -0.03 -15.35 16 12 N -0.68 -14.19 5.29 -422.92 -2.24 -16.43 16 13 C 0.11 2.94 2.99 3.60 0.01 2.95 16 14 C -0.03 -0.95 2.45 -10.77 -0.03 -0.98 16 15 C -0.12 -4.23 4.00 30.67 0.12 -4.11 16 16 C 0.18 8.34 5.31 86.36 0.46 8.80 16 17 N -0.61 -29.73 2.99 -699.10 -2.09 -31.82 16 18 C -0.26 -14.08 9.58 84.03 0.81 -13.28 16 19 H 0.07 3.46 7.89 -2.91 -0.02 3.44 16 20 C -0.05 -2.81 4.90 84.86 0.42 -2.39 16 21 N -0.93 -55.03 11.22 21.65 0.24 -54.79 16 22 Si 0.96 44.76 29.59 68.60 2.03 46.79 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 C 0.14 5.37 6.52 86.36 0.56 5.93 16 27 C -0.11 -3.25 5.02 30.67 0.15 -3.10 16 28 C -0.18 -5.19 8.83 30.59 0.27 -4.92 16 29 C -0.17 -4.63 9.06 30.60 0.28 -4.35 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 1.90 5.73 -2.39 -0.01 1.89 16 33 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.09 0.84 7.67 -2.38 -0.02 0.83 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.41 6.68 6.30 -92.71 -0.58 6.10 16 40 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.05 2.02 6.84 -2.39 -0.02 2.01 16 42 H 0.07 2.16 6.88 -2.39 -0.02 2.15 16 43 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 44 H 0.05 2.77 6.06 -2.39 -0.01 2.75 16 45 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 46 H 0.02 0.68 8.14 -2.39 -0.02 0.67 16 47 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 48 H 0.09 1.80 6.41 -2.39 -0.02 1.79 16 49 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.09 2.81 5.91 -2.39 -0.01 2.80 16 51 H 0.09 2.87 6.37 -2.38 -0.02 2.85 16 52 H 0.10 2.78 6.38 -2.39 -0.02 2.77 16 53 H 0.10 2.52 7.28 -2.39 -0.02 2.51 16 Total: -1.00 -65.90 389.12 1.86 -64.03 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.32 Total: 23.77 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 5.18 Total: -7.29 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -4.09 Total: -103.04 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -1.58 Total: -24.27 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -65.90 1.86 -64.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000141131.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.833 kcal (2) G-P(sol) polarization free energy of solvation -65.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds