Wall clock time and date at job start Tue Mar 31 2020 21:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.49388 * 2 1 4 4 O 1.43039 * 109.56961 * 239.93750 * 2 1 3 5 5 C 1.42904 * 114.13300 * 178.89083 * 4 2 1 6 6 C 1.53090 * 109.41711 * 61.16245 * 5 4 2 7 7 C 1.53178 * 109.16182 * 302.38925 * 6 5 4 8 8 C 1.53091 * 109.48060 * 120.02912 * 2 1 3 9 9 H 1.09004 * 109.52420 * 297.56190 * 8 2 1 10 10 C 1.50704 * 109.52454 * 57.68567 * 8 2 1 11 11 O 1.21284 * 119.99763 * 359.87745 * 10 8 2 12 12 N 1.34771 * 120.00159 * 179.87356 * 10 8 2 13 13 C 1.46507 * 119.99988 * 180.02562 * 12 10 8 14 14 C 1.52996 * 115.54956 * 180.02562 * 13 12 10 15 15 C 1.53044 * 109.46155 * 39.41655 * 14 13 12 16 16 C 1.53187 * 109.31360 * 181.38140 * 15 14 13 17 17 N 1.46930 * 108.77990 * 305.36929 * 16 15 14 18 18 C 1.36935 * 120.62910 * 233.58735 * 17 16 15 19 19 H 1.08001 * 119.99830 * 27.69543 * 18 17 16 20 20 C 1.38810 * 119.99805 * 207.69932 * 18 17 16 21 21 N 1.31619 * 120.00262 * 17.70507 * 20 18 17 22 22 Si 1.86802 * 119.99780 * 197.98365 * 20 18 17 23 23 H 1.48498 * 109.47349 * 265.09160 * 22 20 18 24 24 H 1.48502 * 109.47128 * 25.09267 * 22 20 18 25 25 H 1.48505 * 109.47065 * 145.09053 * 22 20 18 26 26 C 1.46924 * 118.73633 * 53.85403 * 17 16 15 27 27 C 1.53041 * 109.45936 * 159.48311 * 14 13 12 28 28 C 1.53002 * 117.49603 * 325.67135 * 13 12 10 29 29 C 1.53002 * 117.49534 * 34.32734 * 13 12 10 30 30 H 1.09003 * 109.47547 * 299.96956 * 1 2 3 31 31 H 1.08999 * 109.46986 * 59.97341 * 1 2 3 32 32 H 1.09000 * 109.47051 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47889 * 301.17044 * 5 4 2 34 34 H 1.09006 * 109.47597 * 181.14447 * 5 4 2 35 35 H 1.08994 * 109.52023 * 182.48776 * 6 5 4 36 36 H 1.09001 * 109.52155 * 62.29361 * 6 5 4 37 37 H 1.09002 * 109.54558 * 297.11625 * 7 6 5 38 38 H 1.08996 * 109.61704 * 176.89155 * 7 6 5 39 39 H 0.97000 * 120.00341 * 0.02562 * 12 10 8 40 40 H 1.09001 * 109.46198 * 279.44157 * 14 13 12 41 41 H 1.08997 * 109.49527 * 61.43194 * 15 14 13 42 42 H 1.08997 * 109.52212 * 301.35451 * 15 14 13 43 43 H 1.09000 * 109.58940 * 185.57597 * 16 15 14 44 44 H 1.09001 * 109.70017 * 65.22568 * 16 15 14 45 45 H 0.96996 * 120.00255 * 180.27636 * 21 20 18 46 46 H 1.08994 * 109.58677 * 65.93461 * 26 17 16 47 47 H 1.08999 * 109.58155 * 186.35773 * 26 17 16 48 48 H 1.09001 * 109.49717 * 298.56914 * 27 14 13 49 49 H 1.08997 * 109.49793 * 58.62980 * 27 14 13 50 50 H 1.09003 * 117.49891 * 215.00268 * 28 13 12 51 51 H 1.08999 * 117.50004 * 0.02562 * 28 13 12 52 52 H 1.09000 * 117.50015 * 359.97438 * 29 13 12 53 53 H 1.09007 * 117.49156 * 145.00001 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 8 2.0090 -0.6752 -1.1665 5 6 3.4333 -0.7103 -1.2776 6 6 4.0190 -1.4606 -0.0786 7 6 3.5711 -0.7709 1.2138 8 6 2.0405 -0.7223 1.2495 9 1 1.7138 -0.1850 2.1399 10 6 1.4926 -2.1259 1.2791 11 8 0.7633 -2.5110 0.3899 12 7 1.8131 -2.9531 2.2937 13 6 1.2809 -4.3179 2.3221 14 6 1.7093 -5.1683 3.5196 15 6 1.7206 -4.3028 4.7817 16 6 2.1830 -5.1488 5.9721 17 7 1.3290 -6.3407 6.0655 18 6 0.6885 -6.6502 7.2355 19 1 0.4230 -5.8663 7.9295 20 6 0.3805 -7.9713 7.5298 21 7 0.9882 -8.9472 6.8889 22 14 -0.9022 -8.3640 8.8298 23 1 -0.2302 -8.5995 10.1330 24 1 -1.8434 -7.2225 8.9573 25 1 -1.6527 -9.5824 8.4325 26 6 1.1801 -7.1975 4.8812 27 6 0.7244 -6.3255 3.7014 28 6 -0.1276 -4.5385 1.7670 29 6 1.0907 -5.0299 0.9813 30 1 -0.3634 0.5134 0.8903 31 1 -0.3633 0.5142 -0.8897 32 1 -0.3633 -1.0277 -0.0005 33 1 3.8218 0.3080 -1.2944 34 1 3.7135 -1.2217 -2.1986 35 1 5.1072 -1.4503 -0.1386 36 1 3.6626 -2.4907 -0.0841 37 1 3.9689 0.2435 1.2425 38 1 3.9383 -1.3310 2.0737 39 1 2.3961 -2.6450 3.0051 40 1 2.7085 -5.5665 3.3434 41 1 0.7163 -3.9246 4.9725 42 1 2.4044 -3.4654 4.6430 43 1 2.0986 -4.5660 6.8894 44 1 3.2197 -5.4525 5.8264 45 1 0.7700 -9.8703 7.0917 46 1 2.1362 -7.6649 4.6458 47 1 0.4336 -7.9669 5.0785 48 1 -0.2706 -5.9283 3.9024 49 1 0.6990 -6.9278 2.7933 50 1 -0.7489 -5.2897 2.2547 51 1 -0.6582 -3.6684 1.3802 52 1 1.3611 -4.4829 0.0781 53 1 1.2711 -6.1046 0.9523 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000141140.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:56 Heat of formation + Delta-G solvation = -52.204815 kcal Electronic energy + Delta-G solvation = -31400.838584 eV Core-core repulsion = 27466.068607 eV Total energy + Delta-G solvation = -3934.769978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.00735 -40.41824 -38.92224 -37.27921 -35.13602 -34.52974 -33.59263 -33.52518 -31.90033 -31.35213 -28.87151 -27.39049 -25.79890 -24.72086 -23.83978 -23.42909 -23.27136 -22.77050 -21.37926 -20.51940 -20.04340 -18.65437 -18.22749 -17.20159 -17.10351 -16.73088 -16.64803 -16.17386 -15.77195 -15.61274 -15.34468 -15.29335 -15.06100 -14.76496 -14.61877 -14.46214 -14.08863 -13.98257 -13.69534 -13.47071 -13.21817 -13.07674 -12.96737 -12.94646 -12.70559 -12.56459 -12.43816 -12.35155 -12.31737 -11.98682 -11.88736 -11.75966 -11.71016 -11.58397 -11.41687 -11.29431 -11.14995 -10.86681 -10.52650 -10.44136 -10.11334 -9.47706 -8.66814 -7.86388 -5.30277 1.45851 1.48420 1.57780 1.71122 2.11917 2.52080 2.94047 3.00289 3.28209 3.54040 3.64522 3.73023 3.75420 3.77318 3.87717 4.01757 4.02610 4.07317 4.27172 4.31281 4.40019 4.43603 4.45981 4.48804 4.57363 4.67797 4.69979 4.74298 4.77021 4.80620 4.85094 4.85980 4.89313 4.98045 5.03211 5.06936 5.11063 5.14754 5.16217 5.24494 5.27592 5.28602 5.36636 5.42099 5.49624 5.55633 5.66539 5.73094 5.79264 6.40591 6.44175 6.66991 7.16539 7.41135 7.89060 8.39781 9.19757 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024910 B = 0.002622 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.769041 B =10677.083570 C =10775.820029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 H 0.085 0.915 4 O -0.394 6.394 5 C 0.054 3.946 6 C -0.157 4.157 7 C -0.111 4.111 8 C -0.139 4.139 9 H 0.128 0.872 10 C 0.516 3.484 11 O -0.543 6.543 12 N -0.688 5.688 13 C 0.119 3.881 14 C -0.032 4.032 15 C -0.109 4.109 16 C 0.140 3.860 17 N -0.611 5.611 18 C -0.260 4.260 19 H 0.066 0.934 20 C -0.052 4.052 21 N -0.935 5.935 22 Si 0.963 3.037 23 H -0.286 1.286 24 H -0.270 1.270 25 H -0.294 1.294 26 C 0.178 3.822 27 C -0.118 4.118 28 C -0.181 4.181 29 C -0.174 4.174 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.043 0.957 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.412 0.588 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.085 0.915 43 H 0.055 0.945 44 H 0.017 0.983 45 H 0.249 0.751 46 H -0.003 1.003 47 H 0.052 0.948 48 H 0.054 0.946 49 H 0.063 0.937 50 H 0.094 0.906 51 H 0.092 0.908 52 H 0.093 0.907 53 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.381 20.965 -13.626 25.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.050 3.950 3 H 0.102 0.898 4 O -0.313 6.313 5 C -0.022 4.022 6 C -0.195 4.195 7 C -0.148 4.148 8 C -0.160 4.160 9 H 0.145 0.855 10 C 0.304 3.696 11 O -0.421 6.421 12 N -0.340 5.340 13 C 0.031 3.969 14 C -0.051 4.051 15 C -0.148 4.148 16 C 0.015 3.985 17 N -0.334 5.334 18 C -0.390 4.390 19 H 0.084 0.916 20 C -0.247 4.247 21 N -0.581 5.581 22 Si 0.791 3.209 23 H -0.213 1.213 24 H -0.195 1.195 25 H -0.220 1.220 26 C 0.053 3.947 27 C -0.157 4.157 28 C -0.220 4.220 29 C -0.213 4.213 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.061 0.939 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.250 0.750 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.074 0.926 44 H 0.035 0.965 45 H 0.058 0.942 46 H 0.015 0.985 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.081 0.919 50 H 0.112 0.888 51 H 0.110 0.890 52 H 0.112 0.888 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.734 20.487 -14.353 25.663 hybrid contribution -0.274 -0.839 1.157 1.455 sum 5.460 19.648 -13.197 24.290 Atomic orbital electron populations 1.22073 0.93655 1.04024 1.02255 1.21953 0.95142 0.94522 0.83395 0.89771 1.88060 1.21678 1.78421 1.43190 1.22697 0.80668 1.00370 0.98494 1.22191 1.02252 0.99272 0.95805 1.21656 0.91363 1.03460 0.98356 1.22182 0.98563 0.92820 1.02475 0.85466 1.20883 0.80202 0.87806 0.80732 1.90615 1.37183 1.76606 1.37658 1.45375 1.51033 1.11184 1.26366 1.20621 0.97742 0.83842 0.94687 1.20490 0.98982 0.94080 0.91569 1.21849 1.01420 0.97529 0.94033 1.21075 0.92353 0.88080 0.97038 1.44341 1.53770 1.26896 1.08418 1.19509 1.30164 0.91305 0.98049 0.91586 1.25747 1.01925 0.95998 1.01021 1.70181 1.43138 0.98607 1.46172 0.85334 0.79435 0.77239 0.78891 1.21252 1.19519 1.22048 1.20656 0.97235 0.92031 0.84826 1.22170 0.98504 0.96824 0.98248 1.23405 0.91615 1.03350 1.03600 1.23284 1.02532 0.99791 0.95674 0.90217 0.92458 0.91387 0.91271 0.89282 0.88728 0.93861 0.88060 0.89856 0.75004 0.91001 0.92807 0.89622 0.92615 0.96521 0.94194 0.98514 0.92977 0.92779 0.91859 0.88813 0.88959 0.88826 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 9.22 71.98 0.66 -2.53 16 2 C 0.11 1.86 2.85 30.62 0.09 1.95 16 3 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 4 O -0.39 -8.86 9.47 -133.08 -1.26 -10.12 16 5 C 0.05 0.84 6.84 72.01 0.49 1.34 16 6 C -0.16 -2.25 5.88 30.68 0.18 -2.07 16 7 C -0.11 -1.21 5.46 30.72 0.17 -1.04 16 8 C -0.14 -2.09 2.59 -11.45 -0.03 -2.12 16 9 H 0.13 1.32 8.14 -2.38 -0.02 1.30 16 10 C 0.52 11.67 5.34 87.66 0.47 12.14 16 11 O -0.54 -16.16 8.37 12.86 0.11 -16.05 16 12 N -0.69 -15.00 5.27 -422.91 -2.23 -17.22 16 13 C 0.12 3.25 2.98 3.60 0.01 3.26 16 14 C -0.03 -0.97 2.45 -10.77 -0.03 -1.00 16 15 C -0.11 -3.25 5.02 30.67 0.15 -3.09 16 16 C 0.14 5.41 6.51 86.36 0.56 5.98 16 17 N -0.61 -30.02 2.99 -698.28 -2.09 -32.10 16 18 C -0.26 -14.18 9.58 84.03 0.81 -13.37 16 19 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 20 C -0.05 -2.88 4.90 84.86 0.42 -2.47 16 21 N -0.93 -55.33 11.19 21.65 0.24 -55.09 16 22 Si 0.96 44.89 29.59 68.60 2.03 46.92 16 23 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 26 C 0.18 8.51 5.34 86.51 0.46 8.97 16 27 C -0.12 -4.36 4.02 30.82 0.12 -4.23 16 28 C -0.18 -5.48 8.84 30.62 0.27 -5.21 16 29 C -0.17 -5.10 9.06 30.62 0.28 -4.82 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.80 5.32 -2.39 -0.01 1.79 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.04 0.89 7.39 -2.39 -0.02 0.87 16 37 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.08 0.78 7.50 -2.39 -0.02 0.76 16 39 H 0.41 6.93 6.21 -92.71 -0.58 6.35 16 40 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.09 1.85 6.41 -2.39 -0.02 1.83 16 43 H 0.06 2.11 7.93 -2.39 -0.02 2.09 16 44 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 46 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 47 H 0.05 2.86 6.03 -2.39 -0.01 2.84 16 48 H 0.05 2.08 6.84 -2.39 -0.02 2.07 16 49 H 0.06 2.17 6.87 -2.39 -0.02 2.15 16 50 H 0.09 2.92 5.91 -2.39 -0.01 2.91 16 51 H 0.09 2.99 6.37 -2.39 -0.02 2.98 16 52 H 0.09 2.99 6.38 -2.39 -0.02 2.97 16 53 H 0.09 2.66 7.27 -2.38 -0.02 2.64 16 Total: -1.00 -69.24 385.42 2.22 -67.03 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.33 Total: 24.97 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 5.09 Total: -8.32 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -4.07 Total: -104.41 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -1.15 Total: -26.18 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -69.24 2.22 -67.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000141140.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.821 kcal (2) G-P(sol) polarization free energy of solvation -69.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds