Wall clock time and date at job start Tue Mar 31 2020 21:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47549 * 2 1 4 4 C 1.53082 * 109.48271 * 120.03617 * 2 1 3 5 5 C 1.53180 * 109.16599 * 177.59310 * 4 2 1 6 6 H 1.09005 * 109.61391 * 62.93071 * 5 4 2 7 7 C 1.50697 * 109.54757 * 183.15193 * 5 4 2 8 8 O 1.21287 * 119.99663 * 359.55615 * 7 5 4 9 9 N 1.34779 * 120.00105 * 179.55682 * 7 5 4 10 10 C 1.46498 * 119.99659 * 179.97438 * 9 7 5 11 11 C 1.53001 * 115.54542 * 179.97438 * 10 9 7 12 12 C 1.53041 * 109.46372 * 39.41606 * 11 10 9 13 13 C 1.53187 * 109.31222 * 181.38604 * 12 11 10 14 14 N 1.46923 * 108.77790 * 305.36434 * 13 12 11 15 15 C 1.36937 * 120.63106 * 233.59113 * 14 13 12 16 16 H 1.07999 * 120.00670 * 28.08923 * 15 14 13 17 17 C 1.38814 * 119.99803 * 208.08899 * 15 14 13 18 18 N 1.31623 * 120.00319 * 17.64661 * 17 15 14 19 19 Si 1.86803 * 119.99964 * 197.64539 * 17 15 14 20 20 H 1.48504 * 109.46901 * 94.06968 * 19 17 15 21 21 H 1.48504 * 109.47303 * 214.06646 * 19 17 15 22 22 H 1.48501 * 109.46970 * 334.06889 * 19 17 15 23 23 C 1.46928 * 118.73762 * 53.86377 * 14 13 12 24 24 C 1.53042 * 109.45910 * 159.48648 * 11 10 9 25 25 C 1.52996 * 117.50349 * 325.67112 * 10 9 7 26 26 C 1.52999 * 117.50210 * 34.33083 * 10 9 7 27 27 C 1.53172 * 109.03522 * 303.02109 * 5 4 2 28 28 C 1.53094 * 109.16598 * 56.97593 * 27 5 4 29 29 O 1.42899 * 109.47883 * 239.98305 * 2 1 3 30 30 H 1.09011 * 109.46777 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47505 * 300.01913 * 1 2 3 32 32 H 1.08996 * 109.47698 * 60.02247 * 1 2 3 33 33 H 1.09007 * 109.52544 * 57.68691 * 4 2 1 34 34 H 1.09004 * 109.52384 * 297.50069 * 4 2 1 35 35 H 0.97002 * 119.99630 * 359.97438 * 9 7 5 36 36 H 1.09005 * 109.46143 * 279.44341 * 11 10 9 37 37 H 1.09008 * 109.49455 * 61.43287 * 12 11 10 38 38 H 1.09002 * 109.49853 * 301.33849 * 12 11 10 39 39 H 1.09007 * 109.58222 * 185.57855 * 13 12 11 40 40 H 1.08997 * 109.70779 * 65.22465 * 13 12 11 41 41 H 0.96997 * 120.00013 * 180.02562 * 18 17 15 42 42 H 1.08992 * 109.58852 * 65.92480 * 23 14 13 43 43 H 1.09003 * 109.58716 * 186.35598 * 23 14 13 44 44 H 1.08996 * 109.49676 * 298.56612 * 24 11 10 45 45 H 1.08999 * 109.49705 * 58.66360 * 24 11 10 46 46 H 1.08996 * 117.49608 * 215.00839 * 25 10 9 47 47 H 1.09004 * 117.49663 * 0.02562 * 25 10 9 48 48 H 1.09004 * 117.49640 * 359.97438 * 26 10 9 49 49 H 1.09001 * 117.49668 * 144.99027 * 26 10 9 50 50 H 1.09001 * 109.52219 * 176.88195 * 27 5 4 51 51 H 1.09000 * 109.52651 * 297.07300 * 27 5 4 52 52 H 1.09002 * 109.47708 * 62.37464 * 28 27 5 53 53 H 1.08993 * 109.48784 * 182.40859 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0406 -0.7224 1.2494 5 6 3.5712 -0.7710 1.2120 6 1 3.9703 0.2430 1.2415 7 6 4.0801 -1.5478 2.3988 8 8 3.2974 -2.0104 3.2016 9 7 5.4049 -1.7285 2.5681 10 6 5.8996 -2.4832 3.7222 11 6 7.4201 -2.6267 3.8141 12 6 8.0828 -1.3137 3.3911 13 6 9.6052 -1.4722 3.4512 14 7 9.9802 -1.9317 4.7954 15 6 10.9143 -1.2513 5.5300 16 1 11.0527 -0.1909 5.3787 17 6 11.6833 -1.9244 6.4694 18 7 11.7778 -3.2365 6.4244 19 14 12.5843 -0.9681 7.7973 20 1 11.7443 -0.9086 9.0205 21 1 13.8679 -1.6458 8.1109 22 1 12.8567 0.4101 7.3163 23 6 9.3384 -3.1386 5.3340 24 6 7.8147 -2.9583 5.2551 25 6 5.1208 -2.3602 5.0333 26 6 5.0485 -3.6538 4.2183 27 6 4.0177 -1.4599 -0.0811 28 6 3.4307 -0.7091 -1.2792 29 8 2.0065 -0.6739 -1.1665 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5141 0.8898 32 1 -0.3634 0.5134 -0.8901 33 1 1.6444 -1.7377 1.2707 34 1 1.7148 -0.1846 2.1398 35 1 6.0308 -1.3587 1.9258 36 1 7.7497 -3.4290 3.1538 37 1 7.7731 -0.5159 4.0663 38 1 7.7827 -1.0662 2.3729 39 1 10.0808 -0.5128 3.2471 40 1 9.9280 -2.2047 2.7114 41 1 12.3149 -3.7068 7.0811 42 1 9.6374 -4.0055 4.7448 43 1 9.6377 -3.2792 6.3727 44 1 7.5076 -2.1451 5.9126 45 1 7.3239 -3.8813 5.5635 46 1 5.6917 -2.3811 5.9616 47 1 4.2400 -1.7180 5.0372 48 1 4.1203 -3.8622 3.6862 49 1 5.5719 -4.5259 4.6103 50 1 5.1059 -1.4495 -0.1423 51 1 3.6614 -2.4900 -0.0868 52 1 3.8192 0.3092 -1.2958 53 1 3.7099 -1.2198 -2.2007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000305795.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:31 Heat of formation + Delta-G solvation = -63.636475 kcal Electronic energy + Delta-G solvation = -30565.701078 eV Core-core repulsion = 26630.435387 eV Total energy + Delta-G solvation = -3935.265692 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.88505 -40.42241 -39.26676 -37.42721 -35.06784 -34.54904 -33.94115 -33.41192 -31.91307 -31.34853 -28.85159 -27.45431 -26.18611 -24.56144 -23.85412 -23.57803 -23.41812 -22.09989 -21.34053 -20.85046 -20.08953 -18.75674 -18.42156 -17.29368 -16.99551 -16.90681 -16.62576 -16.23964 -15.79038 -15.59751 -15.35007 -15.26588 -15.15788 -14.92876 -14.75169 -14.49024 -14.16361 -14.02764 -13.99269 -13.51822 -13.18804 -13.10033 -12.97614 -12.82123 -12.59163 -12.51843 -12.46795 -12.37015 -12.28234 -12.08375 -11.94011 -11.77978 -11.73214 -11.67270 -11.45546 -11.37716 -11.18740 -10.91425 -10.74941 -10.53333 -10.30515 -9.58216 -8.66868 -7.86670 -5.31039 1.46147 1.48269 1.54656 1.56571 2.03202 2.51632 2.87088 2.95137 3.27539 3.47102 3.59714 3.63360 3.74502 3.76818 3.82961 3.94879 4.00371 4.15970 4.21959 4.24759 4.28721 4.42977 4.47025 4.49684 4.54055 4.57983 4.68358 4.72656 4.72953 4.77821 4.83075 4.83591 4.88374 4.99709 5.02615 5.04813 5.07098 5.10138 5.14034 5.23718 5.25773 5.28297 5.32587 5.32709 5.41791 5.53848 5.60448 5.67208 5.78452 6.32753 6.40532 6.55731 7.16319 7.23942 7.88718 8.39469 9.19405 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024285 B = 0.002352 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.681799 B =11901.247094 C =12312.154020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.086 3.914 3 H 0.074 0.926 4 C -0.124 4.124 5 C -0.104 4.104 6 H 0.121 0.879 7 C 0.514 3.486 8 O -0.568 6.568 9 N -0.683 5.683 10 C 0.115 3.885 11 C -0.032 4.032 12 C -0.111 4.111 13 C 0.140 3.860 14 N -0.611 5.611 15 C -0.258 4.258 16 H 0.066 0.934 17 C -0.052 4.052 18 N -0.934 5.934 19 Si 0.963 3.037 20 H -0.288 1.288 21 H -0.296 1.296 22 H -0.267 1.267 23 C 0.177 3.823 24 C -0.118 4.118 25 C -0.182 4.182 26 C -0.175 4.175 27 C -0.143 4.143 28 C 0.061 3.939 29 O -0.401 6.401 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.416 0.584 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.018 0.982 41 H 0.249 0.751 42 H -0.002 1.002 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.097 0.903 50 H 0.100 0.900 51 H 0.061 0.939 52 H 0.071 0.929 53 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.322 6.604 -15.536 25.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.092 0.908 4 C -0.162 4.162 5 C -0.125 4.125 6 H 0.139 0.861 7 C 0.302 3.698 8 O -0.447 6.447 9 N -0.333 5.333 10 C 0.027 3.973 11 C -0.051 4.051 12 C -0.150 4.150 13 C 0.015 3.985 14 N -0.334 5.334 15 C -0.389 4.389 16 H 0.084 0.916 17 C -0.247 4.247 18 N -0.581 5.581 19 Si 0.791 3.209 20 H -0.215 1.215 21 H -0.223 1.223 22 H -0.192 1.192 23 C 0.051 3.949 24 C -0.158 4.158 25 C -0.220 4.220 26 C -0.213 4.213 27 C -0.181 4.181 28 C -0.015 4.015 29 O -0.320 6.320 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.254 0.746 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.058 0.942 42 H 0.016 0.984 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.115 0.885 47 H 0.109 0.891 48 H 0.112 0.888 49 H 0.116 0.884 50 H 0.118 0.882 51 H 0.079 0.921 52 H 0.089 0.911 53 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.888 6.134 -15.050 25.683 hybrid contribution 1.254 0.102 1.126 1.688 sum -18.634 6.236 -13.923 24.083 Atomic orbital electron populations 1.21782 0.92422 1.02723 1.03297 1.22198 0.95795 0.95256 0.83841 0.90792 1.21987 0.93264 1.01884 0.99072 1.21434 0.97446 1.01033 0.92587 0.86119 1.21088 0.81765 0.79839 0.87075 1.90658 1.56762 1.50918 1.46335 1.45342 1.07137 1.54714 1.26147 1.20696 0.91747 0.97852 0.87027 1.20502 0.88627 0.98656 0.97330 1.21868 0.95649 0.96310 1.01132 1.21076 0.93923 0.97564 0.85985 1.44341 1.45130 1.29974 1.13987 1.19512 1.11881 0.91515 1.15976 0.91585 1.25762 0.99160 0.96361 1.03449 1.70181 1.43448 1.07783 1.36670 0.85318 0.77348 0.78485 0.79708 1.21542 1.22296 1.19177 1.20669 0.88952 0.87106 0.98131 1.22176 0.97108 1.00595 0.95902 1.23418 1.02287 1.01083 0.95247 1.23317 1.01750 0.92508 1.03724 1.22208 1.02782 0.99972 0.93172 1.22721 0.80006 1.00703 0.98112 1.87929 1.22299 1.78388 1.43415 0.92746 0.89857 0.91213 0.92455 0.90630 0.74583 0.90765 0.92775 0.89496 0.92610 0.96435 0.94203 0.98378 0.93053 0.92757 0.91737 0.88542 0.89061 0.88803 0.88433 0.88172 0.92060 0.91083 0.87232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.56 71.98 0.69 -1.13 16 2 C 0.09 1.22 3.26 30.62 0.10 1.32 16 3 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 4 C -0.12 -2.12 4.01 30.68 0.12 -1.99 16 5 C -0.10 -1.59 2.62 -11.42 -0.03 -1.62 16 6 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 7 C 0.51 11.53 6.86 87.66 0.60 12.13 16 8 O -0.57 -16.94 11.45 -3.05 -0.03 -16.97 16 9 N -0.68 -14.42 5.29 -422.93 -2.24 -16.66 16 10 C 0.11 3.05 2.98 3.60 0.01 3.06 16 11 C -0.03 -0.95 2.45 -10.77 -0.03 -0.97 16 12 C -0.11 -3.20 5.02 30.67 0.15 -3.05 16 13 C 0.14 5.32 6.51 86.36 0.56 5.89 16 14 N -0.61 -29.68 2.99 -698.26 -2.09 -31.77 16 15 C -0.26 -13.98 9.58 84.03 0.81 -13.17 16 16 H 0.07 3.48 7.89 -2.91 -0.02 3.46 16 17 C -0.05 -2.89 4.90 84.86 0.42 -2.47 16 18 N -0.93 -55.05 11.22 21.65 0.24 -54.81 16 19 Si 0.96 44.70 29.59 68.60 2.03 46.73 16 20 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 C 0.18 8.35 5.34 86.51 0.46 8.81 16 24 C -0.12 -4.28 4.02 30.82 0.12 -4.16 16 25 C -0.18 -5.38 8.84 30.62 0.27 -5.10 16 26 C -0.17 -4.94 9.06 30.62 0.28 -4.66 16 27 C -0.14 -1.77 5.29 30.68 0.16 -1.61 16 28 C 0.06 0.67 6.84 72.01 0.49 1.17 16 29 O -0.40 -6.65 10.41 -148.98 -1.55 -8.20 16 30 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 33 H 0.06 1.24 8.03 -2.38 -0.02 1.22 16 34 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.42 6.52 6.30 -92.71 -0.58 5.93 16 36 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.09 1.79 6.41 -2.39 -0.02 1.77 16 39 H 0.06 2.08 7.93 -2.38 -0.02 2.06 16 40 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 42 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.05 2.79 6.06 -2.39 -0.01 2.77 16 44 H 0.05 2.05 6.84 -2.39 -0.02 2.03 16 45 H 0.06 2.15 6.87 -2.39 -0.02 2.13 16 46 H 0.10 2.92 5.91 -2.39 -0.01 2.91 16 47 H 0.09 2.91 6.38 -2.39 -0.02 2.89 16 48 H 0.09 2.87 6.37 -2.38 -0.02 2.85 16 49 H 0.10 2.65 7.27 -2.39 -0.02 2.63 16 50 H 0.10 0.84 7.67 -2.39 -0.02 0.82 16 51 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 53 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -68.30 393.51 1.87 -66.44 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.31 Total: 22.79 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 5.19 Total: -7.56 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -4.08 Total: -103.24 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -1.59 Total: -25.17 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -68.30 1.87 -66.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000305795.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.801 kcal (2) G-P(sol) polarization free energy of solvation -68.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds