Wall clock time and date at job start Tue Mar 31 2020 21:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.48165 * 2 1 4 4 C 1.53087 * 109.48224 * 120.02734 * 2 1 3 5 5 C 1.53175 * 109.16595 * 177.58814 * 4 2 1 6 6 H 1.08997 * 109.54482 * 183.14743 * 5 4 2 7 7 C 1.50702 * 109.53960 * 62.88350 * 5 4 2 8 8 O 1.21276 * 120.00633 * 0.02562 * 7 5 4 9 9 N 1.34776 * 119.99589 * 180.02562 * 7 5 4 10 10 C 1.46502 * 120.00063 * 179.97438 * 9 7 5 11 11 C 1.53000 * 115.55195 * 179.97438 * 10 9 7 12 12 C 1.53045 * 109.45642 * 85.61326 * 11 10 9 13 13 C 1.53196 * 109.30907 * 178.59966 * 12 11 10 14 14 N 1.46926 * 108.76320 * 54.65603 * 13 12 11 15 15 C 1.36936 * 120.63190 * 126.40262 * 14 13 12 16 16 H 1.08001 * 120.00257 * 331.82568 * 15 14 13 17 17 C 1.38816 * 120.00235 * 151.81789 * 15 14 13 18 18 N 1.31620 * 120.00079 * 343.08363 * 17 15 14 19 19 Si 1.86798 * 119.99910 * 163.07218 * 17 15 14 20 20 H 1.48506 * 109.46832 * 90.00984 * 19 17 15 21 21 H 1.48501 * 109.47212 * 210.00080 * 19 17 15 22 22 H 1.48495 * 109.47633 * 330.00941 * 19 17 15 23 23 C 1.46927 * 118.74006 * 306.37920 * 14 13 12 24 24 C 1.53037 * 109.46099 * 325.55567 * 11 10 9 25 25 C 1.53003 * 117.49675 * 34.32926 * 10 9 7 26 26 C 1.53000 * 117.49501 * 325.67290 * 10 9 7 27 27 C 1.53173 * 109.03541 * 303.02106 * 5 4 2 28 28 C 1.53090 * 109.16763 * 56.97427 * 27 5 4 29 29 O 1.42900 * 109.41713 * 302.39645 * 28 27 5 30 30 H 1.09002 * 109.47108 * 299.97920 * 1 2 3 31 31 H 1.08999 * 109.47510 * 59.97153 * 1 2 3 32 32 H 1.09000 * 109.47242 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.52385 * 57.67668 * 4 2 1 34 34 H 1.09004 * 109.57151 * 297.52936 * 4 2 1 35 35 H 0.97002 * 120.00375 * 359.97438 * 9 7 5 36 36 H 1.09001 * 109.45870 * 205.58378 * 11 10 9 37 37 H 1.08999 * 109.49546 * 298.56267 * 12 11 10 38 38 H 1.08998 * 109.49809 * 58.66030 * 12 11 10 39 39 H 1.08998 * 109.59896 * 294.86540 * 13 12 11 40 40 H 1.09001 * 109.69894 * 174.50461 * 13 12 11 41 41 H 0.96992 * 120.00338 * 179.97438 * 18 17 15 42 42 H 1.08997 * 109.58881 * 293.82289 * 23 14 13 43 43 H 1.08998 * 109.70331 * 173.46739 * 23 14 13 44 44 H 1.08997 * 109.50069 * 301.34003 * 24 11 10 45 45 H 1.09008 * 109.49364 * 61.43402 * 24 11 10 46 46 H 1.08997 * 117.49754 * 359.97438 * 25 10 9 47 47 H 1.09003 * 117.49854 * 145.02334 * 25 10 9 48 48 H 1.09008 * 117.49588 * 214.97546 * 26 10 9 49 49 H 1.08993 * 117.50126 * 359.97016 * 26 10 9 50 50 H 1.08995 * 109.52534 * 176.88644 * 27 5 4 51 51 H 1.09010 * 109.51848 * 297.07259 * 27 5 4 52 52 H 1.08999 * 109.48288 * 182.40856 * 28 27 5 53 53 H 1.09005 * 109.47766 * 62.37513 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7222 1.2495 5 6 3.5711 -0.7709 1.2121 6 1 3.9392 -1.3326 2.0706 7 6 4.1211 0.6316 1.2516 8 8 3.3651 1.5783 1.3049 9 7 5.4534 0.8338 1.2276 10 6 5.9882 2.1972 1.2654 11 6 7.5138 2.3087 1.2341 12 6 7.9968 2.2888 -0.2180 13 6 9.5214 2.4359 -0.2469 14 7 10.1131 1.3911 0.6000 15 6 11.0753 0.5527 0.1038 16 1 11.0987 0.3216 -0.9509 17 6 12.0209 -0.0003 0.9565 18 7 12.2126 0.5176 2.1512 19 14 13.0212 -1.4796 0.4083 20 1 14.2617 -1.0167 -0.2640 21 1 13.3774 -2.3024 1.5921 22 1 12.2198 -2.2957 -0.5388 23 6 9.6530 1.2634 1.9895 24 6 8.1269 1.1299 1.9934 25 6 5.2211 3.2344 2.0880 26 6 5.1849 3.2909 0.5587 27 6 4.0176 -1.4601 -0.0809 28 6 3.4306 -0.7095 -1.2791 29 8 2.0065 -0.6743 -1.1664 30 1 -0.3633 0.5135 0.8902 31 1 -0.3634 0.5143 -0.8897 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6442 -1.7374 1.2710 34 1 1.7148 -0.1852 2.1404 35 1 6.0583 0.0766 1.1853 36 1 7.8194 3.2428 1.7057 37 1 7.7133 1.3445 -0.6827 38 1 7.5414 3.1149 -0.7642 39 1 9.8013 3.4177 0.1348 40 1 9.8819 2.3250 -1.2695 41 1 12.8731 0.1311 2.7471 42 1 9.9437 2.1496 2.5536 43 1 10.0984 0.3786 2.4442 44 1 7.7642 1.1309 3.0212 45 1 7.8421 0.1966 1.5075 46 1 4.3183 2.9024 2.6007 47 1 5.8032 3.9965 2.6061 48 1 5.7433 4.0902 0.0714 49 1 4.2589 2.9960 0.0654 50 1 5.1057 -1.4499 -0.1422 51 1 3.6611 -2.4903 -0.0863 52 1 3.7098 -1.2206 -2.2005 53 1 3.8192 0.3088 -1.2959 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000305799.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:40 Heat of formation + Delta-G solvation = -61.415384 kcal Electronic energy + Delta-G solvation = -31446.400803 eV Core-core repulsion = 27511.231425 eV Total energy + Delta-G solvation = -3935.169378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.05500 -40.35231 -39.00223 -37.37295 -35.08307 -34.58047 -33.90783 -33.19301 -32.15532 -31.34004 -28.84473 -27.43002 -25.89164 -24.49865 -24.01506 -23.80366 -22.95295 -22.69335 -21.31569 -20.71038 -20.18700 -18.73523 -18.07722 -17.28125 -17.12352 -16.83438 -16.64136 -16.13160 -15.91066 -15.54135 -15.32521 -15.24500 -15.04732 -14.82866 -14.70046 -14.54467 -14.28260 -13.90241 -13.67115 -13.40264 -13.33789 -13.13226 -12.95573 -12.89873 -12.82375 -12.58404 -12.54842 -12.33169 -12.16531 -12.04581 -11.97776 -11.88055 -11.77241 -11.69315 -11.48990 -11.43058 -11.10245 -10.91689 -10.63319 -10.51136 -10.15635 -9.52462 -8.65047 -7.85540 -5.30439 1.47844 1.49737 1.55944 1.58920 2.10288 2.53048 2.85023 2.97562 3.28880 3.49503 3.60064 3.64222 3.73321 3.78360 3.87102 3.96543 4.02122 4.08355 4.24588 4.28390 4.35295 4.41991 4.48917 4.53808 4.54331 4.66612 4.70367 4.71656 4.75455 4.80607 4.82052 4.84064 4.94403 4.96249 5.01921 5.03508 5.04993 5.07445 5.18424 5.24359 5.24893 5.26872 5.31390 5.36264 5.38833 5.54434 5.64989 5.67657 5.79260 6.30546 6.41541 6.55604 7.17745 7.23946 7.89301 8.40759 9.20673 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016117 B = 0.003083 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.841556 B = 9080.817622 C = 9942.879787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.071 3.929 3 H 0.059 0.941 4 C -0.122 4.122 5 C -0.111 4.111 6 H 0.121 0.879 7 C 0.514 3.486 8 O -0.557 6.557 9 N -0.685 5.685 10 C 0.111 3.889 11 C -0.033 4.033 12 C -0.109 4.109 13 C 0.140 3.860 14 N -0.609 5.609 15 C -0.260 4.260 16 H 0.065 0.935 17 C -0.050 4.050 18 N -0.935 5.935 19 Si 0.964 3.036 20 H -0.288 1.288 21 H -0.293 1.293 22 H -0.268 1.268 23 C 0.178 3.822 24 C -0.117 4.117 25 C -0.176 4.176 26 C -0.170 4.170 27 C -0.142 4.142 28 C 0.057 3.943 29 O -0.397 6.397 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.411 0.589 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.011 0.989 40 H 0.052 0.948 41 H 0.249 0.751 42 H -0.007 1.007 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.101 0.899 49 H 0.092 0.908 50 H 0.087 0.913 51 H 0.099 0.901 52 H 0.108 0.892 53 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.908 -2.314 -2.072 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.014 3.986 3 H 0.077 0.923 4 C -0.160 4.160 5 C -0.132 4.132 6 H 0.139 0.861 7 C 0.302 3.698 8 O -0.437 6.437 9 N -0.336 5.336 10 C 0.023 3.977 11 C -0.052 4.052 12 C -0.148 4.148 13 C 0.014 3.986 14 N -0.332 5.332 15 C -0.390 4.390 16 H 0.083 0.917 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.792 3.208 20 H -0.215 1.215 21 H -0.220 1.220 22 H -0.193 1.193 23 C 0.052 3.948 24 C -0.156 4.156 25 C -0.214 4.214 26 C -0.208 4.208 27 C -0.180 4.180 28 C -0.020 4.020 29 O -0.316 6.316 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.249 0.751 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.029 0.971 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.011 0.989 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.112 0.888 47 H 0.117 0.883 48 H 0.120 0.880 49 H 0.110 0.890 50 H 0.106 0.894 51 H 0.117 0.883 52 H 0.126 0.874 53 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -21.444 -1.797 -2.068 21.618 hybrid contribution 1.578 -0.633 0.227 1.716 sum -19.866 -2.429 -1.842 20.098 Atomic orbital electron populations 1.21735 0.92229 1.03021 1.02654 1.22379 0.95827 0.95763 0.84611 0.92280 1.21961 0.92734 1.02341 0.98925 1.21504 0.97603 0.92516 1.01612 0.86089 1.21014 0.81774 0.92094 0.74941 1.90598 1.58289 1.44385 1.50392 1.45467 1.06842 1.07736 1.73527 1.20689 0.91476 0.79768 1.05725 1.20615 0.88582 0.99271 0.96739 1.21873 0.95670 1.01741 0.95522 1.21062 0.92677 0.90361 0.94460 1.44312 1.43580 1.35636 1.09691 1.19488 1.05265 1.20296 0.93964 0.91682 1.25761 0.98437 1.02808 0.97503 1.70178 1.36346 1.41554 1.10074 0.85338 0.78629 0.79840 0.77000 1.21527 1.21974 1.19314 1.20558 0.90683 0.98507 0.85014 1.21964 0.96655 0.97598 0.99363 1.23399 1.02413 1.01024 0.94552 1.23280 1.01846 1.00362 0.95342 1.22192 1.02086 1.01065 0.92684 1.22621 0.80821 0.99050 0.99472 1.87875 1.21393 1.78214 1.44154 0.90208 0.92453 0.91358 0.89085 0.90470 0.75138 0.90686 0.92507 0.90644 0.97071 0.92948 0.94181 0.98936 0.92726 0.91742 0.92242 0.88753 0.88266 0.88031 0.89005 0.89445 0.88252 0.87378 0.95019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.56 71.98 0.69 -1.68 16 2 C 0.07 1.51 2.98 30.62 0.09 1.60 16 3 H 0.06 1.55 5.80 -2.39 -0.01 1.54 16 4 C -0.12 -2.13 4.56 30.68 0.14 -1.99 16 5 C -0.11 -1.93 3.04 -11.42 -0.03 -1.96 16 6 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 7 C 0.51 11.79 5.52 87.66 0.48 12.27 16 8 O -0.56 -15.47 9.32 -3.02 -0.03 -15.50 16 9 N -0.69 -15.85 5.27 -422.92 -2.23 -18.08 16 10 C 0.11 2.86 2.48 3.60 0.01 2.87 16 11 C -0.03 -0.97 2.28 -10.77 -0.02 -0.99 16 12 C -0.11 -3.35 5.22 30.68 0.16 -3.19 16 13 C 0.14 5.51 6.52 86.36 0.56 6.07 16 14 N -0.61 -29.15 2.99 -699.09 -2.09 -31.25 16 15 C -0.26 -13.81 9.58 84.03 0.81 -13.01 16 16 H 0.07 3.38 7.88 -2.91 -0.02 3.36 16 17 C -0.05 -2.71 4.92 84.86 0.42 -2.29 16 18 N -0.94 -54.13 11.19 21.65 0.24 -53.89 16 19 Si 0.96 43.59 29.59 68.60 2.03 45.62 16 20 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 C 0.18 8.12 5.30 86.36 0.46 8.58 16 24 C -0.12 -3.90 4.83 30.67 0.15 -3.75 16 25 C -0.18 -4.53 9.37 30.62 0.29 -4.25 16 26 C -0.17 -4.34 8.91 30.62 0.27 -4.07 16 27 C -0.14 -2.26 5.57 30.68 0.17 -2.08 16 28 C 0.06 1.12 6.62 72.01 0.48 1.60 16 29 O -0.40 -9.09 10.41 -148.98 -1.55 -10.64 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.39 8.03 -2.38 -0.02 1.38 16 35 H 0.41 8.82 6.08 -92.71 -0.56 8.25 16 36 H 0.07 2.29 7.90 -2.39 -0.02 2.27 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.08 2.00 7.25 -2.39 -0.02 1.98 16 39 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 41 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 42 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 43 H 0.05 2.85 6.07 -2.39 -0.01 2.83 16 44 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.06 1.90 6.50 -2.38 -0.02 1.88 16 46 H 0.09 2.68 6.37 -2.39 -0.02 2.66 16 47 H 0.10 2.38 8.05 -2.39 -0.02 2.36 16 48 H 0.10 2.37 7.61 -2.38 -0.02 2.36 16 49 H 0.09 2.62 6.38 -2.39 -0.02 2.60 16 50 H 0.09 1.29 7.52 -2.39 -0.02 1.27 16 51 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 52 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 53 H 0.03 0.73 7.38 -2.38 -0.02 0.71 16 Total: -1.00 -63.90 391.95 1.81 -62.09 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.33 Total: 27.92 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 5.11 Total: -6.28 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -4.08 Total: -103.21 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -1.58 Total: -26.14 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -63.90 1.81 -62.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000305799.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.670 kcal (2) G-P(sol) polarization free energy of solvation -63.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds