Wall clock time and date at job start Tue Mar 31 2020 21:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.48296 * 2 1 4 4 C 1.53092 * 109.47885 * 239.98096 * 2 1 3 5 5 C 1.53174 * 109.16425 * 182.39790 * 4 2 1 6 6 H 1.09001 * 109.54558 * 297.02522 * 5 4 2 7 7 C 1.50704 * 109.54653 * 176.84575 * 5 4 2 8 8 O 1.21277 * 119.99516 * 0.02562 * 7 5 4 9 9 N 1.34773 * 120.00023 * 179.97438 * 7 5 4 10 10 C 1.46506 * 119.99674 * 179.97438 * 9 7 5 11 11 C 1.53002 * 115.54408 * 180.02562 * 10 9 7 12 12 C 1.53039 * 109.46184 * 85.65785 * 11 10 9 13 13 C 1.53192 * 109.31505 * 178.61437 * 12 11 10 14 14 N 1.46919 * 108.77683 * 54.62860 * 13 12 11 15 15 C 1.36936 * 120.63088 * 126.37743 * 14 13 12 16 16 H 1.08007 * 119.99755 * 207.69059 * 15 14 13 17 17 C 1.38814 * 120.00073 * 27.68982 * 15 14 13 18 18 N 1.31615 * 119.99691 * 17.36409 * 17 15 14 19 19 Si 1.86806 * 119.99771 * 197.36700 * 17 15 14 20 20 H 1.48503 * 109.47274 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.46847 * 120.00029 * 19 17 15 22 22 H 1.48501 * 109.46926 * 239.99642 * 19 17 15 23 23 C 1.46929 * 118.73889 * 306.39094 * 14 13 12 24 24 C 1.53033 * 109.46456 * 325.58173 * 11 10 9 25 25 C 1.52990 * 117.49961 * 34.33453 * 10 9 7 26 26 C 1.52990 * 117.50077 * 325.67199 * 10 9 7 27 27 C 1.53182 * 109.03465 * 56.98063 * 5 4 2 28 28 C 1.53086 * 109.16264 * 303.01867 * 27 5 4 29 29 O 1.42902 * 109.47957 * 120.02760 * 2 1 3 30 30 H 1.08994 * 109.47724 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47172 * 299.99650 * 1 2 3 32 32 H 1.09006 * 109.47194 * 59.99397 * 1 2 3 33 33 H 1.09005 * 109.52650 * 302.30307 * 4 2 1 34 34 H 1.09003 * 109.52468 * 62.42748 * 4 2 1 35 35 H 0.97003 * 119.99923 * 0.02562 * 9 7 5 36 36 H 1.09004 * 109.45755 * 205.60852 * 11 10 9 37 37 H 1.09012 * 109.49207 * 298.55792 * 12 11 10 38 38 H 1.08991 * 109.50362 * 58.65404 * 12 11 10 39 39 H 1.09009 * 109.57880 * 294.84216 * 13 12 11 40 40 H 1.08997 * 109.59139 * 174.42265 * 13 12 11 41 41 H 0.97007 * 119.99464 * 179.97438 * 18 17 15 42 42 H 1.08997 * 109.59245 * 293.82094 * 23 14 13 43 43 H 1.09008 * 109.70309 * 173.46806 * 23 14 13 44 44 H 1.09000 * 109.49844 * 301.34028 * 24 11 10 45 45 H 1.09004 * 109.49744 * 61.40530 * 24 11 10 46 46 H 1.09000 * 117.50094 * 0.02562 * 25 10 9 47 47 H 1.08998 * 117.49951 * 145.01555 * 25 10 9 48 48 H 1.08998 * 117.50081 * 214.97608 * 26 10 9 49 49 H 1.09005 * 117.50028 * 359.97438 * 26 10 9 50 50 H 1.08999 * 109.52069 * 62.92713 * 27 5 4 51 51 H 1.08999 * 109.52125 * 183.11713 * 27 5 4 52 52 H 1.09005 * 109.47994 * 177.59186 * 28 27 5 53 53 H 1.09003 * 109.48471 * 297.61369 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2497 5 6 3.5710 -0.7705 -1.2125 6 1 3.9688 0.2439 -1.2427 7 6 4.0799 -1.5471 -2.3996 8 8 3.2969 -2.0160 -3.1982 9 7 5.4051 -1.7195 -2.5741 10 6 5.8997 -2.4749 -3.7279 11 6 7.4207 -2.6086 -3.8260 12 6 7.8816 -3.8092 -2.9964 13 6 9.4006 -3.9607 -3.1248 14 7 10.0359 -2.6896 -2.7516 15 6 11.0143 -2.6533 -1.7942 16 1 11.1637 -1.7582 -1.2086 17 6 11.8139 -3.7669 -1.5763 18 7 11.8792 -4.7178 -2.4839 19 14 12.7971 -3.9157 0.0051 20 1 12.5524 -2.7223 0.8543 21 1 12.3773 -5.1384 0.7357 22 1 14.2438 -4.0044 -0.3181 23 6 9.6013 -1.4581 -3.4249 24 6 8.0801 -1.3346 -3.2930 25 6 5.1143 -2.3615 -5.0359 26 6 5.0543 -3.6528 -4.2162 27 6 4.0178 -1.4598 0.0805 28 6 3.4309 -0.7092 1.2787 29 8 2.0065 -0.6742 1.1664 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5140 -0.8900 33 1 1.6444 -1.7374 -1.2712 34 1 1.7136 -0.1847 -2.1400 35 1 6.0313 -1.3440 -1.9355 36 1 7.7058 -2.7565 -4.8677 37 1 7.6190 -3.6508 -1.9503 38 1 7.3937 -4.7128 -3.3616 39 1 9.6572 -4.2089 -4.1548 40 1 9.7466 -4.7515 -2.4592 41 1 12.4383 -5.4958 -2.3318 42 1 9.8743 -1.5022 -4.4792 43 1 10.0797 -0.5963 -2.9594 44 1 7.7334 -0.4770 -3.8695 45 1 7.8152 -1.1992 -2.2444 46 1 4.2299 -1.7245 -5.0383 47 1 5.6811 -2.3822 -5.9667 48 1 5.5816 -4.5225 -4.6081 49 1 4.1302 -3.8660 -3.6788 50 1 3.6616 -2.4899 0.0858 51 1 5.1060 -1.4493 0.1416 52 1 3.7103 -1.2203 2.2001 53 1 3.8195 0.3090 1.2957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000305801.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:45 Heat of formation + Delta-G solvation = -66.189530 kcal Electronic energy + Delta-G solvation = -30830.562153 eV Core-core repulsion = 26895.185752 eV Total energy + Delta-G solvation = -3935.376400 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.84933 -40.36437 -39.21808 -37.44646 -35.05049 -34.57135 -33.89904 -33.30099 -32.08735 -31.41367 -28.86132 -27.43690 -26.10935 -24.38820 -24.08386 -23.72965 -22.96377 -22.14440 -21.29400 -20.97846 -20.19445 -18.78703 -18.40346 -17.28518 -16.95484 -16.86662 -16.59068 -16.22955 -15.76603 -15.56822 -15.32135 -15.26770 -14.99194 -14.87738 -14.81104 -14.51768 -14.29556 -14.10404 -13.90936 -13.53209 -13.17895 -13.09871 -12.97580 -12.83517 -12.67581 -12.58361 -12.41851 -12.26529 -12.14934 -12.08965 -11.93145 -11.89759 -11.72957 -11.70713 -11.53989 -11.40747 -11.12892 -10.94038 -10.73677 -10.52665 -10.31761 -9.55876 -8.66104 -7.85451 -5.29891 1.46827 1.49353 1.54537 1.59005 2.07158 2.52710 2.85731 2.95585 3.29021 3.47129 3.58681 3.61085 3.72929 3.75371 3.86644 3.93709 4.01786 4.12943 4.20943 4.25525 4.35463 4.45060 4.46249 4.49190 4.53720 4.56986 4.66366 4.70868 4.75650 4.76181 4.80666 4.82900 4.94046 4.99956 5.02107 5.04873 5.05675 5.08493 5.17963 5.24691 5.26278 5.26308 5.32521 5.33548 5.38146 5.52961 5.63366 5.68817 5.78794 6.31241 6.41369 6.55146 7.17262 7.22907 7.89450 8.40610 9.20944 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013826 B = 0.002955 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.693671 B = 9473.220893 C =10854.625415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.085 3.915 3 H 0.075 0.925 4 C -0.122 4.122 5 C -0.104 4.104 6 H 0.122 0.878 7 C 0.515 3.485 8 O -0.566 6.566 9 N -0.683 5.683 10 C 0.113 3.887 11 C -0.032 4.032 12 C -0.115 4.115 13 C 0.177 3.823 14 N -0.609 5.609 15 C -0.256 4.256 16 H 0.070 0.930 17 C -0.053 4.053 18 N -0.937 5.937 19 Si 0.963 3.037 20 H -0.263 1.263 21 H -0.293 1.293 22 H -0.296 1.296 23 C 0.140 3.860 24 C -0.112 4.112 25 C -0.170 4.170 26 C -0.180 4.180 27 C -0.145 4.145 28 C 0.063 3.937 29 O -0.400 6.400 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.413 0.587 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.060 0.940 39 H -0.007 1.007 40 H 0.051 0.949 41 H 0.248 0.752 42 H 0.012 0.988 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.095 0.905 47 H 0.103 0.897 48 H 0.096 0.904 49 H 0.090 0.910 50 H 0.058 0.942 51 H 0.092 0.908 52 H 0.106 0.894 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.907 11.424 3.328 23.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 H 0.093 0.907 4 C -0.160 4.160 5 C -0.125 4.125 6 H 0.139 0.861 7 C 0.303 3.697 8 O -0.445 6.445 9 N -0.334 5.334 10 C 0.025 3.975 11 C -0.051 4.051 12 C -0.154 4.154 13 C 0.051 3.949 14 N -0.332 5.332 15 C -0.387 4.387 16 H 0.087 0.913 17 C -0.248 4.248 18 N -0.583 5.583 19 Si 0.792 3.208 20 H -0.187 1.187 21 H -0.220 1.220 22 H -0.223 1.223 23 C 0.015 3.985 24 C -0.151 4.151 25 C -0.208 4.208 26 C -0.219 4.219 27 C -0.183 4.183 28 C -0.014 4.014 29 O -0.320 6.320 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.251 0.749 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.012 0.988 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.030 0.970 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.114 0.886 47 H 0.121 0.879 48 H 0.114 0.886 49 H 0.108 0.892 50 H 0.077 0.923 51 H 0.110 0.890 52 H 0.124 0.876 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.474 10.912 2.930 23.384 hybrid contribution 1.414 -0.609 0.473 1.611 sum -19.059 10.303 3.403 21.931 Atomic orbital electron populations 1.21778 0.92273 1.02720 1.03376 1.22235 0.95886 0.95301 0.83829 0.90691 1.21981 0.92995 1.01890 0.99167 1.21424 0.97625 1.01019 0.92404 0.86065 1.21014 0.81774 0.79917 0.86970 1.90641 1.56649 1.50710 1.46524 1.45419 1.07053 1.54413 1.26512 1.20693 0.91698 0.97917 0.87203 1.20613 0.88475 0.95986 1.00069 1.21990 0.96690 0.97430 0.99334 1.20574 0.89347 0.88729 0.96231 1.44324 1.41656 1.03108 1.44132 1.19560 1.08854 1.00074 1.10164 0.91259 1.25774 0.99283 0.98979 1.00812 1.70197 1.42625 1.11411 1.34087 0.85267 0.77676 0.77713 0.80169 1.18742 1.21966 1.22286 1.21059 0.93740 0.89065 0.94682 1.21869 0.95588 0.96663 1.00953 1.23395 1.02366 1.00562 0.94460 1.23276 1.01805 0.92706 1.04084 1.22192 1.02404 0.99994 0.93704 1.22681 0.80113 1.00648 0.97940 1.87935 1.22061 1.78442 1.43584 0.92803 0.91262 0.89605 0.92553 0.90169 0.74895 0.90587 0.93039 0.92188 0.98844 0.93021 0.94283 0.97039 0.92404 0.90112 0.91762 0.88636 0.87918 0.88563 0.89177 0.92280 0.88953 0.87593 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.56 71.98 0.69 -1.22 16 2 C 0.08 1.29 3.26 30.62 0.10 1.39 16 3 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.12 -2.19 4.02 30.68 0.12 -2.07 16 5 C -0.10 -1.77 2.61 -11.42 -0.03 -1.80 16 6 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 7 C 0.52 12.11 6.86 87.66 0.60 12.71 16 8 O -0.57 -16.87 11.45 -3.02 -0.03 -16.90 16 9 N -0.68 -15.65 5.30 -422.94 -2.24 -17.89 16 10 C 0.11 2.97 2.48 3.60 0.01 2.98 16 11 C -0.03 -0.95 2.28 -10.77 -0.02 -0.98 16 12 C -0.12 -4.11 5.22 30.67 0.16 -3.95 16 13 C 0.18 8.27 5.31 86.36 0.46 8.73 16 14 N -0.61 -29.07 2.99 -699.08 -2.09 -31.16 16 15 C -0.26 -13.56 9.59 84.03 0.81 -12.76 16 16 H 0.07 3.54 7.89 -2.91 -0.02 3.52 16 17 C -0.05 -2.92 4.91 84.86 0.42 -2.51 16 18 N -0.94 -54.92 11.19 21.65 0.24 -54.68 16 19 Si 0.96 43.96 29.59 68.60 2.03 45.99 16 20 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 23 C 0.14 5.32 6.51 86.36 0.56 5.89 16 24 C -0.11 -3.20 4.83 30.67 0.15 -3.06 16 25 C -0.17 -4.44 9.37 30.61 0.29 -4.15 16 26 C -0.18 -5.05 8.91 30.61 0.27 -4.77 16 27 C -0.14 -2.34 5.30 30.68 0.16 -2.18 16 28 C 0.06 0.89 6.84 72.01 0.49 1.39 16 29 O -0.40 -7.50 10.41 -148.98 -1.55 -9.05 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.06 1.28 8.02 -2.38 -0.02 1.26 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.41 8.23 6.18 -92.71 -0.57 7.66 16 36 H 0.08 2.33 7.90 -2.39 -0.02 2.31 16 37 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.06 2.02 7.24 -2.39 -0.02 2.00 16 39 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 40 H 0.05 2.78 6.03 -2.39 -0.01 2.77 16 41 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 42 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.06 2.13 7.94 -2.38 -0.02 2.11 16 44 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.06 1.74 6.50 -2.39 -0.02 1.73 16 46 H 0.10 2.72 6.38 -2.39 -0.02 2.70 16 47 H 0.10 2.43 8.05 -2.39 -0.02 2.41 16 48 H 0.10 2.60 7.60 -2.39 -0.02 2.58 16 49 H 0.09 2.82 6.38 -2.38 -0.02 2.80 16 50 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.09 1.29 7.70 -2.39 -0.02 1.28 16 52 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 53 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -66.30 398.07 1.90 -64.40 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.31 Total: 25.64 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 5.23 Total: -6.35 kcal Atomic # 7 Polarization: -99.64 SS G_CDS: -4.09 Total: -103.73 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -1.59 Total: -25.95 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -66.30 1.90 -64.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000305801.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.785 kcal (2) G-P(sol) polarization free energy of solvation -66.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds