Wall clock time and date at job start Tue Mar 31 2020 20:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 110.67777 * 2 1 4 4 C 1.54992 * 110.61880 * 237.03785 * 2 1 3 5 5 C 1.54812 * 102.09376 * 204.47408 * 4 2 1 6 6 C 1.54101 * 104.18382 * 20.88187 * 5 4 2 7 7 H 1.09004 * 109.87663 * 242.45396 * 6 5 4 8 8 C 1.50700 * 109.88195 * 121.45615 * 6 5 4 9 9 O 1.21280 * 119.99976 * 245.00138 * 8 6 5 10 10 N 1.34774 * 120.00077 * 64.99286 * 8 6 5 11 11 C 1.46925 * 120.63074 * 180.02562 * 10 8 6 12 12 C 1.53191 * 108.77538 * 233.58719 * 11 10 8 13 13 C 1.53043 * 109.31665 * 305.36644 * 12 11 10 14 14 C 1.52997 * 109.46325 * 181.38839 * 13 12 11 15 15 H 1.09002 * 109.87469 * 50.67951 * 14 13 12 16 16 C 1.54322 * 109.88320 * 171.70458 * 14 13 12 17 17 C 1.55153 * 102.94145 * 141.60794 * 16 14 13 18 18 C 1.54904 * 101.58449 * 324.49451 * 17 16 14 19 19 N 1.47025 * 109.87668 * 289.50996 * 14 13 12 20 20 C 1.36935 * 125.65267 * 61.62519 * 19 14 13 21 21 H 1.08002 * 119.99968 * 303.16496 * 20 19 14 22 22 C 1.38812 * 120.00238 * 123.16083 * 20 19 14 23 23 N 1.31622 * 119.99990 * 181.77410 * 22 20 19 24 24 Si 1.86793 * 120.00136 * 1.77320 * 22 20 19 25 25 H 1.48493 * 109.47245 * 84.46454 * 24 22 20 26 26 H 1.48504 * 109.47186 * 204.46484 * 24 22 20 27 27 H 1.48507 * 109.47204 * 324.46631 * 24 22 20 28 28 C 1.53040 * 109.53516 * 61.36063 * 13 12 11 29 29 C 1.46927 * 120.63100 * 359.97438 * 10 8 6 30 30 O 1.43743 * 107.29781 * 2.02718 * 6 5 4 31 31 H 1.08997 * 109.47023 * 182.96272 * 1 2 3 32 32 H 1.08998 * 109.47192 * 302.96769 * 1 2 3 33 33 H 1.09003 * 109.46836 * 62.95959 * 1 2 3 34 34 H 1.09001 * 110.91147 * 86.27361 * 4 2 1 35 35 H 1.09001 * 110.93889 * 322.68446 * 4 2 1 36 36 H 1.09001 * 110.48843 * 262.20382 * 5 4 2 37 37 H 1.09004 * 110.48581 * 139.55074 * 5 4 2 38 38 H 1.09004 * 109.58677 * 113.80017 * 11 10 8 39 39 H 1.08999 * 109.58742 * 353.37277 * 11 10 8 40 40 H 1.09005 * 109.49847 * 185.41299 * 12 11 10 41 41 H 1.09001 * 109.52426 * 65.33424 * 12 11 10 42 42 H 1.09007 * 109.45485 * 301.34463 * 13 12 11 43 43 H 1.09006 * 110.71617 * 259.97078 * 16 14 13 44 44 H 1.08996 * 110.71841 * 23.06294 * 16 14 13 45 45 H 1.09001 * 111.00423 * 82.57251 * 17 16 14 46 46 H 1.09007 * 111.00380 * 206.41937 * 17 16 14 47 47 H 1.08999 * 110.36890 * 155.84741 * 18 17 16 48 48 H 1.09003 * 110.37001 * 278.06362 * 18 17 16 49 49 H 0.96992 * 120.00539 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.49326 * 58.59293 * 28 13 12 51 51 H 1.08998 * 109.49172 * 178.68492 * 28 13 12 52 52 H 1.09000 * 109.58917 * 246.19615 * 29 10 8 53 53 H 1.08996 * 109.58708 * 6.62244 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0758 -0.7893 -1.2171 5 6 3.4795 -1.2166 -0.7236 6 6 3.3839 -1.1254 0.8118 7 1 4.0872 -0.3801 1.1833 8 6 3.6888 -2.4678 1.4249 9 8 2.8270 -3.0667 2.0328 10 7 4.9192 -3.0029 1.2977 11 6 5.2315 -4.3110 1.8894 12 6 6.4723 -4.1674 2.7763 13 6 7.6130 -3.5600 1.9564 14 6 8.8644 -3.4471 2.8295 15 1 9.0654 -4.4025 3.3142 16 6 10.0728 -3.0331 1.9636 17 6 10.8458 -2.0573 2.8898 18 6 9.6858 -1.3478 3.6316 19 7 8.6739 -2.3991 3.8429 20 6 7.7154 -2.3991 4.8208 21 1 6.6715 -2.4723 4.5538 22 6 8.0855 -2.3053 6.1554 23 7 7.1666 -2.3405 7.0972 24 14 9.8874 -2.1290 6.6149 25 1 10.2794 -0.6987 6.5415 26 1 10.0970 -2.6294 7.9973 27 1 10.7185 -2.9191 5.6712 28 6 7.2061 -2.1686 1.4659 29 6 5.9735 -2.2898 0.5636 30 8 2.0384 -0.7353 1.1338 31 1 -0.3633 -1.0263 0.0531 32 1 -0.3633 0.5592 0.8622 33 1 -0.3633 0.4672 -0.9154 34 1 2.1509 -0.1476 -2.0950 35 1 1.4552 -1.6606 -1.4265 36 1 4.2407 -0.5331 -1.0997 37 1 3.6974 -2.2391 -1.0321 38 1 5.4303 -5.0325 1.0969 39 1 4.3889 -4.6500 2.4921 40 1 6.7716 -5.1486 3.1449 41 1 6.2438 -3.5161 3.6199 42 1 7.8248 -4.1996 1.0995 43 1 10.6866 -3.8999 1.7185 44 1 9.7420 -2.5275 1.0564 45 1 11.4810 -2.6022 3.5882 46 1 11.4301 -1.3454 2.3066 47 1 10.0308 -0.9557 4.5883 48 1 9.2780 -0.5445 3.0180 49 1 7.4250 -2.2746 8.0297 50 1 6.9703 -1.5358 2.3216 51 1 8.0277 -1.7271 0.9019 52 1 6.2327 -2.8469 -0.3367 53 1 5.6204 -1.2952 0.2915 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004548291.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:29 Heat of formation + Delta-G solvation = -76.558224 kcal Electronic energy + Delta-G solvation = -31665.805148 eV Core-core repulsion = 27729.979127 eV Total energy + Delta-G solvation = -3935.826021 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.75183 -40.41033 -39.42335 -37.64657 -34.65404 -34.31703 -33.27606 -32.77600 -31.87494 -31.51209 -29.52606 -27.75644 -26.33282 -25.26852 -24.17503 -23.35327 -22.35474 -22.16901 -21.60061 -20.70749 -19.88416 -18.90093 -18.27171 -17.59262 -17.53736 -17.32919 -16.58107 -16.24387 -15.63499 -15.55035 -15.35470 -15.10838 -14.86450 -14.68102 -14.53966 -14.48327 -14.22460 -13.93305 -13.88361 -13.44531 -13.31612 -13.19458 -13.13641 -12.95808 -12.70710 -12.63942 -12.53853 -12.45989 -12.35032 -12.03755 -11.87570 -11.85577 -11.76009 -11.69057 -11.48164 -11.21723 -11.10927 -10.98831 -10.89758 -10.58276 -10.43791 -9.60079 -8.37609 -7.95854 -5.84171 1.29893 1.36406 1.49201 1.50243 1.87073 2.41664 2.88819 3.11598 3.36291 3.47718 3.54010 3.80696 3.87429 3.91311 4.01684 4.06478 4.19059 4.20182 4.23443 4.29996 4.34313 4.35228 4.42366 4.49491 4.55036 4.57795 4.67735 4.75809 4.78097 4.84078 4.86380 4.88327 4.91161 4.95502 5.00197 5.04013 5.06884 5.11719 5.17792 5.18575 5.25658 5.31896 5.42492 5.43605 5.53807 5.57810 5.66919 5.81189 5.91002 6.04477 6.41813 6.47302 7.03640 7.13759 7.56561 8.36230 9.01661 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.003426 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.409505 B = 8170.818432 C = 8809.044072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 H 0.090 0.910 4 C -0.141 4.141 5 C -0.136 4.136 6 C 0.062 3.938 7 H 0.100 0.900 8 C 0.501 3.499 9 O -0.588 6.588 10 N -0.599 5.599 11 C 0.120 3.880 12 C -0.138 4.138 13 C -0.077 4.077 14 C 0.150 3.850 15 H 0.015 0.985 16 C -0.112 4.112 17 C -0.130 4.130 18 C 0.106 3.894 19 N -0.612 5.612 20 C -0.229 4.229 21 H 0.047 0.953 22 C -0.019 4.019 23 N -0.958 5.958 24 Si 0.960 3.040 25 H -0.279 1.279 26 H -0.317 1.317 27 H -0.249 1.249 28 C -0.115 4.115 29 C 0.105 3.895 30 O -0.389 6.389 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.124 0.876 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.050 0.950 46 H 0.098 0.902 47 H 0.013 0.987 48 H 0.038 0.962 49 H 0.260 0.740 50 H 0.039 0.961 51 H 0.096 0.904 52 H 0.104 0.896 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.164 3.987 -25.478 25.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.002 4.002 3 H 0.108 0.892 4 C -0.179 4.179 5 C -0.174 4.174 6 C 0.001 3.999 7 H 0.118 0.882 8 C 0.290 3.710 9 O -0.468 6.468 10 N -0.332 5.332 11 C -0.002 4.002 12 C -0.176 4.176 13 C -0.097 4.097 14 C 0.045 3.955 15 H 0.033 0.967 16 C -0.150 4.150 17 C -0.168 4.168 18 C -0.017 4.017 19 N -0.339 5.339 20 C -0.358 4.358 21 H 0.064 0.936 22 C -0.216 4.216 23 N -0.602 5.602 24 Si 0.789 3.211 25 H -0.206 1.206 26 H -0.246 1.246 27 H -0.172 1.172 28 C -0.153 4.153 29 C -0.016 4.016 30 O -0.309 6.309 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.121 0.879 34 H 0.137 0.863 35 H 0.088 0.912 36 H 0.142 0.858 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.115 0.885 45 H 0.069 0.931 46 H 0.117 0.883 47 H 0.031 0.969 48 H 0.056 0.944 49 H 0.069 0.931 50 H 0.057 0.943 51 H 0.115 0.885 52 H 0.122 0.878 53 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.483 3.630 -24.748 25.017 hybrid contribution 0.337 -0.081 1.965 1.996 sum -0.146 3.549 -22.782 23.057 Atomic orbital electron populations 1.21798 0.92496 1.02353 1.03547 1.23575 0.96144 0.95978 0.84507 0.89242 1.23205 0.94932 1.00963 0.98776 1.23053 1.00173 1.04662 0.89519 1.22708 0.86679 0.92562 0.97972 0.88215 1.21226 0.82100 0.88019 0.79671 1.90652 1.48066 1.64138 1.43986 1.48144 1.10515 1.20623 1.53964 1.21537 0.97220 0.84364 0.97090 1.22191 0.95206 1.01085 0.99155 1.21389 0.94268 0.96646 0.97357 1.21333 0.93955 0.91010 0.89237 0.96707 1.22603 0.95055 0.99524 0.97769 1.22756 0.96458 0.99103 0.98493 1.22052 0.90485 0.92590 0.96604 1.44535 1.35577 1.19500 1.34268 1.18371 0.87457 1.45696 0.84312 0.93580 1.26673 1.01007 0.97271 0.96631 1.69951 1.35294 1.54629 1.00325 0.85582 0.82176 0.77974 0.75356 1.20616 1.24642 1.17246 1.21816 0.97402 0.97167 0.98911 1.22217 0.86642 0.98011 0.94773 1.89022 1.27055 1.73846 1.40947 0.93299 0.92645 0.87933 0.86261 0.91195 0.85786 0.89877 0.88957 0.93051 0.92563 0.92559 0.89062 0.89794 0.88502 0.93118 0.88319 0.96871 0.94396 0.93103 0.94258 0.88549 0.87780 0.88239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.66 71.98 0.70 -1.88 16 2 C 0.05 1.08 3.98 31.28 0.12 1.20 16 3 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 4 C -0.14 -2.02 6.59 31.89 0.21 -1.81 16 5 C -0.14 -2.14 5.07 31.59 0.16 -1.98 16 6 C 0.06 1.67 2.96 30.22 0.09 1.76 16 7 H 0.10 2.52 7.50 -2.39 -0.02 2.50 16 8 C 0.50 17.99 6.89 87.66 0.60 18.59 16 9 O -0.59 -27.67 15.94 15.69 0.25 -27.42 16 10 N -0.60 -18.23 2.97 -818.82 -2.43 -20.66 16 11 C 0.12 3.97 6.43 86.36 0.56 4.53 16 12 C -0.14 -5.16 5.03 30.67 0.15 -5.00 16 13 C -0.08 -2.26 1.87 -10.77 -0.02 -2.28 16 14 C 0.15 5.19 2.92 45.34 0.13 5.33 16 15 H 0.01 0.59 8.13 -2.39 -0.02 0.57 16 16 C -0.11 -2.75 6.30 31.78 0.20 -2.55 16 17 C -0.13 -3.68 7.08 31.98 0.23 -3.45 16 18 C 0.11 4.05 6.19 86.85 0.54 4.59 16 19 N -0.61 -26.84 1.39 -668.26 -0.93 -27.77 16 20 C -0.23 -12.74 8.77 84.03 0.74 -12.01 16 21 H 0.05 2.95 5.43 -2.91 -0.02 2.93 16 22 C -0.02 -1.14 5.50 84.86 0.47 -0.68 16 23 N -0.96 -62.14 13.97 21.65 0.30 -61.83 16 24 Si 0.96 47.74 25.08 68.60 1.72 49.46 16 25 H -0.28 -13.41 6.84 99.48 0.68 -12.73 16 26 H -0.32 -16.27 7.11 99.48 0.71 -15.56 16 27 H -0.25 -11.49 6.46 99.48 0.64 -10.85 16 28 C -0.11 -3.04 4.91 30.69 0.15 -2.89 16 29 C 0.10 2.17 5.61 86.38 0.48 2.66 16 30 O -0.39 -12.46 10.44 -130.26 -1.36 -13.82 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 1.14 8.06 -2.39 -0.02 1.12 16 36 H 0.12 1.04 7.72 -2.39 -0.02 1.02 16 37 H 0.08 1.32 7.51 -2.39 -0.02 1.31 16 38 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.05 2.04 7.01 -2.39 -0.02 2.03 16 40 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 41 H 0.06 2.79 4.30 -2.39 -0.01 2.78 16 42 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 43 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 44 H 0.10 1.83 6.30 -2.39 -0.02 1.82 16 45 H 0.05 1.57 7.54 -2.39 -0.02 1.55 16 46 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 47 H 0.01 0.57 4.28 -2.39 -0.01 0.56 16 48 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 50 H 0.04 1.45 7.08 -2.39 -0.02 1.43 16 51 H 0.10 1.97 6.54 -2.39 -0.02 1.95 16 52 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 53 H 0.10 1.63 4.84 -2.39 -0.01 1.62 16 Total: -1.00 -83.96 384.17 3.86 -80.10 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.80 Total: 17.80 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 5.51 Total: 4.14 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -3.06 Total: -110.26 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -1.11 Total: -41.24 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.72 Total: 49.46 kcal Total: -83.96 3.86 -80.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004548291.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.540 kcal (2) G-P(sol) polarization free energy of solvation -83.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds