Wall clock time and date at job start Tue Mar 31 2020 20:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.33212 * 2 1 4 4 C 1.54478 * 110.46483 * 237.69176 * 2 1 3 5 5 C 1.54684 * 104.07809 * 217.04999 * 4 2 1 6 6 C 1.54485 * 103.98027 * 0.13633 * 5 4 2 7 7 H 1.09001 * 110.37195 * 264.96739 * 6 5 4 8 8 C 1.50699 * 110.37393 * 142.73775 * 6 5 4 9 9 O 1.21285 * 119.99864 * 246.54631 * 8 6 5 10 10 N 1.34769 * 119.99966 * 66.55211 * 8 6 5 11 11 C 1.46930 * 120.63301 * 180.02562 * 10 8 6 12 12 C 1.53188 * 108.77578 * 233.62953 * 11 10 8 13 13 C 1.53044 * 109.31222 * 305.36120 * 12 11 10 14 14 C 1.52998 * 109.45999 * 181.38818 * 13 12 11 15 15 H 1.08997 * 109.99950 * 60.82552 * 14 13 12 16 16 C 1.54342 * 109.99067 * 299.78899 * 14 13 12 17 17 C 1.55157 * 103.01888 * 218.66458 * 16 14 13 18 18 C 1.54912 * 101.57882 * 35.30889 * 17 16 14 19 19 N 1.47021 * 109.88230 * 181.92265 * 14 13 12 20 20 C 1.36929 * 125.64765 * 298.39229 * 19 14 13 21 21 H 1.08001 * 120.00337 * 345.29429 * 20 19 14 22 22 C 1.38808 * 120.00403 * 165.01682 * 20 19 14 23 23 N 1.31621 * 119.99420 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00502 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47146 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46871 * 120.00147 * 24 22 20 27 27 H 1.48495 * 109.47302 * 240.00121 * 24 22 20 28 28 C 1.53035 * 109.53826 * 61.36604 * 13 12 11 29 29 C 1.46923 * 120.63403 * 0.02562 * 10 8 6 30 30 O 1.44423 * 110.37419 * 122.25171 * 2 1 3 31 31 H 1.09007 * 109.47276 * 299.20196 * 1 2 3 32 32 H 1.08998 * 109.47319 * 59.20090 * 1 2 3 33 33 H 1.08999 * 109.47264 * 179.19776 * 1 2 3 34 34 H 1.09005 * 110.51334 * 335.78384 * 4 2 1 35 35 H 1.08995 * 110.51466 * 98.35759 * 4 2 1 36 36 H 1.08994 * 110.61682 * 241.48658 * 5 4 2 37 37 H 1.09004 * 110.49409 * 118.72144 * 5 4 2 38 38 H 1.08997 * 109.58881 * 113.84014 * 11 10 8 39 39 H 1.08999 * 109.69813 * 353.48752 * 11 10 8 40 40 H 1.09005 * 109.49911 * 185.40950 * 12 11 10 41 41 H 1.09000 * 109.52613 * 65.32849 * 12 11 10 42 42 H 1.08995 * 109.45743 * 301.35833 * 13 12 11 43 43 H 1.08995 * 110.84725 * 100.19600 * 16 14 13 44 44 H 1.09000 * 110.66252 * 337.04764 * 16 14 13 45 45 H 1.08993 * 111.00781 * 277.23294 * 17 16 14 46 46 H 1.09001 * 111.00111 * 153.37518 * 17 16 14 47 47 H 1.09006 * 110.36121 * 204.15281 * 18 17 16 48 48 H 1.08998 * 110.36945 * 81.83058 * 18 17 16 49 49 H 0.97004 * 119.99717 * 179.97438 * 23 22 20 50 50 H 1.09002 * 109.49788 * 58.58312 * 28 13 12 51 51 H 1.08997 * 109.50006 * 178.68329 * 28 13 12 52 52 H 1.09003 * 109.59507 * 246.16445 * 29 10 8 53 53 H 1.09004 * 109.58407 * 6.58866 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0701 -0.7735 -1.2232 5 6 3.3235 -1.5022 -0.6841 6 6 3.3882 -1.0840 0.8016 7 1 4.0522 -0.2287 0.9265 8 6 3.8549 -2.2377 1.6515 9 8 3.0995 -2.7442 2.4540 10 7 5.1115 -2.7065 1.5200 11 6 5.5809 -3.8310 2.3411 12 6 6.8729 -3.4167 3.0522 13 6 7.8874 -2.9292 2.0152 14 6 9.1915 -2.5472 2.7183 15 1 9.6078 -3.4154 3.2290 16 6 8.9303 -1.4175 3.7370 17 6 10.1867 -0.5188 3.5921 18 6 10.4797 -0.6362 2.0755 19 7 10.1574 -2.0341 1.7359 20 6 10.6686 -2.7364 0.6774 21 1 10.5599 -3.8102 0.6388 22 6 11.3215 -2.0677 -0.3490 23 7 11.4496 -0.7585 -0.3044 24 14 12.0194 -3.0259 -1.7926 25 1 11.7455 -4.4733 -1.6049 26 1 11.3812 -2.5608 -3.0503 27 1 13.4858 -2.8052 -1.8707 28 6 7.3255 -1.7078 1.2842 29 6 6.0383 -2.1030 0.5529 30 8 2.0328 -0.7225 1.1450 31 1 -0.3634 0.5014 0.8971 32 1 -0.3634 0.5262 -0.8827 33 1 -0.3634 -1.0275 -0.0144 34 1 1.3313 -1.4927 -1.5770 35 1 2.3427 -0.0835 -2.0216 36 1 4.2171 -1.1713 -1.2133 37 1 3.2045 -2.5822 -0.7721 38 1 5.7751 -4.6932 1.7032 39 1 4.8226 -4.0873 3.0810 40 1 7.2834 -4.2723 3.5886 41 1 6.6592 -2.6136 3.7575 42 1 8.0822 -3.7248 1.2960 43 1 8.8563 -1.8168 4.7485 44 1 8.0282 -0.8645 3.4752 45 1 11.0163 -0.9089 4.1816 46 1 9.9637 0.5118 3.8682 47 1 11.5312 -0.4299 1.8753 48 1 9.8443 0.0473 1.5123 49 1 11.9062 -0.2912 -1.0214 50 1 7.1070 -0.9206 2.0058 51 1 8.0580 -1.3471 0.5622 52 1 6.2699 -2.8244 -0.2308 53 1 5.5812 -1.2166 0.1129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004548293.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:33 Heat of formation + Delta-G solvation = -77.292519 kcal Electronic energy + Delta-G solvation = -31316.655342 eV Core-core repulsion = 27380.797480 eV Total energy + Delta-G solvation = -3935.857862 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.76255 -40.38414 -39.43052 -37.67465 -34.79930 -33.97382 -33.28314 -32.76569 -31.74789 -31.14796 -29.30399 -27.66407 -26.49935 -25.26569 -24.15178 -23.56450 -22.45612 -22.05290 -21.72996 -20.74002 -19.60787 -18.65735 -18.12550 -17.49887 -17.46924 -16.83788 -16.65938 -16.28538 -15.71056 -15.69893 -15.56143 -15.29865 -14.87776 -14.73849 -14.47422 -14.17257 -13.93578 -13.82203 -13.54295 -13.49774 -13.29569 -13.22360 -13.01438 -12.79921 -12.77454 -12.76439 -12.63688 -12.48078 -12.14494 -11.95334 -11.87189 -11.82798 -11.77799 -11.63217 -11.47100 -11.21038 -11.15555 -11.03743 -10.91212 -10.60778 -10.57062 -9.70182 -8.67965 -7.77712 -5.12080 1.45420 1.48012 1.50551 1.58646 1.75259 2.54855 2.87677 3.30216 3.40837 3.53922 3.68392 3.76740 3.88658 3.90311 3.97000 4.10834 4.15157 4.18599 4.20348 4.25680 4.28727 4.35444 4.42206 4.43026 4.52379 4.54771 4.64329 4.74889 4.78889 4.81092 4.89442 4.90701 4.93575 4.95375 4.98213 5.06914 5.10527 5.12470 5.14562 5.21070 5.25543 5.28321 5.36392 5.55189 5.58307 5.66157 5.72475 5.74935 5.82162 5.86387 6.31786 6.33981 7.05777 7.20534 7.89333 8.57766 9.33394 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.003254 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.788652 B = 8603.813106 C = 9448.052477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 H 0.085 0.915 4 C -0.143 4.143 5 C -0.143 4.143 6 C 0.057 3.943 7 H 0.109 0.891 8 C 0.517 3.483 9 O -0.575 6.575 10 N -0.598 5.598 11 C 0.114 3.886 12 C -0.116 4.116 13 C -0.083 4.083 14 C 0.158 3.842 15 H 0.027 0.973 16 C -0.116 4.116 17 C -0.140 4.140 18 C 0.182 3.818 19 N -0.607 5.607 20 C -0.220 4.220 21 H 0.072 0.928 22 C -0.057 4.057 23 N -0.944 5.944 24 Si 0.962 3.038 25 H -0.270 1.270 26 H -0.292 1.292 27 H -0.300 1.300 28 C -0.110 4.110 29 C 0.110 3.890 30 O -0.378 6.378 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.077 0.923 47 H 0.027 0.973 48 H 0.001 0.999 49 H 0.244 0.756 50 H 0.059 0.941 51 H 0.060 0.940 52 H 0.076 0.924 53 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.886 1.203 0.158 16.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.001 4.001 3 H 0.103 0.897 4 C -0.181 4.181 5 C -0.181 4.181 6 C -0.003 4.003 7 H 0.126 0.874 8 C 0.305 3.695 9 O -0.455 6.455 10 N -0.331 5.331 11 C -0.008 4.008 12 C -0.155 4.155 13 C -0.103 4.103 14 C 0.052 3.948 15 H 0.044 0.956 16 C -0.153 4.153 17 C -0.178 4.178 18 C 0.056 3.944 19 N -0.331 5.331 20 C -0.350 4.350 21 H 0.090 0.910 22 C -0.250 4.250 23 N -0.593 5.593 24 Si 0.792 3.208 25 H -0.194 1.194 26 H -0.220 1.220 27 H -0.228 1.228 28 C -0.148 4.148 29 C -0.012 4.012 30 O -0.298 6.298 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.045 0.955 48 H 0.019 0.981 49 H 0.053 0.947 50 H 0.078 0.922 51 H 0.079 0.921 52 H 0.094 0.906 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -17.281 0.905 0.596 17.315 hybrid contribution 1.068 -0.353 -1.011 1.512 sum -16.214 0.552 -0.415 16.228 Atomic orbital electron populations 1.21816 0.92098 1.02728 1.03440 1.23370 0.96450 0.95970 0.84355 0.89719 1.23055 0.96579 1.00101 0.98323 1.23052 1.01136 1.01872 0.92015 1.22911 0.86724 0.95815 0.94897 0.87400 1.20673 0.81482 0.84340 0.82979 1.90659 1.55045 1.60996 1.38761 1.48121 1.11121 1.34184 1.39676 1.21634 0.96315 0.88118 0.94752 1.21883 0.93867 1.01963 0.97745 1.21387 0.94827 0.97112 0.96993 1.21135 0.88703 0.95146 0.89810 0.95560 1.22612 0.97691 0.96409 0.98609 1.22898 0.97923 0.99783 0.97222 1.21142 0.97514 0.85382 0.90325 1.44675 1.48074 1.10705 1.29622 1.19203 1.28898 0.90513 0.96389 0.91004 1.25490 1.02976 0.96307 1.00253 1.70137 1.48431 1.07186 1.33561 0.85249 0.77085 0.78382 0.80079 1.19429 1.21963 1.22758 1.21714 0.95568 0.97822 0.99661 1.22005 0.89452 0.98999 0.90734 1.89246 1.25659 1.75050 1.39823 0.92332 0.88460 0.92713 0.90019 0.87588 0.87289 0.91117 0.90634 0.90065 0.89690 0.91580 0.92990 0.90058 0.90916 0.92327 0.90490 0.95464 0.98134 0.94672 0.92200 0.92146 0.90566 0.88121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.53 71.98 0.69 -1.43 16 2 C 0.06 0.97 3.92 31.10 0.12 1.09 16 3 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.14 -2.01 6.64 31.67 0.21 -1.80 16 5 C -0.14 -2.50 5.63 31.67 0.18 -2.33 16 6 C 0.06 1.35 2.75 30.35 0.08 1.44 16 7 H 0.11 2.21 7.50 -2.39 -0.02 2.19 16 8 C 0.52 15.33 7.00 87.66 0.61 15.95 16 9 O -0.58 -21.83 15.97 15.32 0.24 -21.58 16 10 N -0.60 -15.81 2.97 -818.86 -2.43 -18.24 16 11 C 0.11 2.94 6.43 86.36 0.56 3.50 16 12 C -0.12 -2.99 5.10 30.67 0.16 -2.84 16 13 C -0.08 -2.63 1.91 -10.77 -0.02 -2.65 16 14 C 0.16 5.82 2.95 45.35 0.13 5.95 16 15 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 16 C -0.12 -3.61 5.23 31.79 0.17 -3.44 16 17 C -0.14 -4.91 7.09 31.99 0.23 -4.69 16 18 C 0.18 8.41 5.41 86.86 0.47 8.88 16 19 N -0.61 -28.28 2.28 -668.24 -1.52 -29.80 16 20 C -0.22 -11.43 9.84 84.03 0.83 -10.60 16 21 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 22 C -0.06 -3.04 5.47 84.86 0.46 -2.58 16 23 N -0.94 -53.72 10.58 21.65 0.23 -53.49 16 24 Si 0.96 43.83 29.55 68.60 2.03 45.86 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 27 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 28 C -0.11 -3.42 4.93 30.68 0.15 -3.27 16 29 C 0.11 2.73 5.77 86.37 0.50 3.23 16 30 O -0.38 -10.26 10.60 -130.61 -1.39 -11.65 16 31 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 0.90 8.13 -2.39 -0.02 0.89 16 34 H 0.08 1.11 7.87 -2.38 -0.02 1.09 16 35 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.11 1.49 6.94 -2.39 -0.02 1.47 16 37 H 0.07 1.38 7.86 -2.39 -0.02 1.36 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.08 2.25 7.01 -2.39 -0.02 2.23 16 40 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 41 H 0.07 1.72 7.11 -2.39 -0.02 1.70 16 42 H 0.05 1.84 8.04 -2.39 -0.02 1.82 16 43 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.07 2.18 5.49 -2.39 -0.01 2.17 16 45 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.03 1.46 6.94 -2.38 -0.02 1.44 16 48 H 0.00 0.03 8.06 -2.39 -0.02 0.01 16 49 H 0.24 13.65 8.31 -92.70 -0.77 12.88 16 50 H 0.06 1.84 6.14 -2.39 -0.01 1.82 16 51 H 0.06 2.41 7.53 -2.39 -0.02 2.39 16 52 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 53 H 0.10 2.04 4.54 -2.39 -0.01 2.03 16 Total: -1.00 -68.67 393.70 3.56 -65.11 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.88 Total: 19.38 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 5.52 Total: 4.41 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -3.73 Total: -101.54 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -1.14 Total: -33.23 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -68.67 3.56 -65.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004548293.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.178 kcal (2) G-P(sol) polarization free energy of solvation -68.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds