Wall clock time and date at job start Tue Mar 31 2020 21:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 110.54528 * 2 1 4 4 C 1.55131 * 110.52505 * 237.21484 * 2 1 3 5 5 C 1.54995 * 102.09904 * 220.39704 * 4 2 1 6 6 O 1.44377 * 103.48642 * 37.10370 * 5 4 2 7 7 C 1.43745 * 106.98067 * 319.94314 * 6 5 4 8 8 H 1.08995 * 109.87556 * 266.94163 * 7 6 5 9 9 C 1.50699 * 109.88297 * 145.93603 * 7 6 5 10 10 O 1.21280 * 119.99953 * 343.93353 * 9 7 6 11 11 N 1.34770 * 119.99926 * 163.65216 * 9 7 6 12 12 C 1.46930 * 120.63173 * 4.62279 * 11 9 7 13 13 C 1.52759 * 109.01050 * 233.58276 * 12 11 9 14 14 C 1.53046 * 109.38109 * 305.59060 * 13 12 11 15 15 C 1.53001 * 109.45730 * 181.26003 * 14 13 12 16 16 H 1.08999 * 109.87128 * 294.49206 * 15 14 13 17 17 C 1.54321 * 109.88436 * 55.66596 * 15 14 13 18 18 C 1.55151 * 102.94543 * 141.60865 * 17 15 14 19 19 C 1.54912 * 101.58059 * 324.50016 * 18 17 15 20 20 N 1.47018 * 109.87978 * 173.47436 * 15 14 13 21 21 C 1.36940 * 125.65194 * 61.60947 * 20 15 14 22 22 H 1.08003 * 119.99910 * 43.33350 * 21 20 15 23 23 C 1.38807 * 120.00090 * 223.34033 * 21 20 15 24 24 N 1.31614 * 120.00236 * 167.04220 * 23 21 20 25 25 Si 1.86807 * 119.99918 * 347.04334 * 23 21 20 26 26 H 1.48504 * 109.47054 * 85.98875 * 25 23 21 27 27 H 1.48499 * 109.47043 * 205.98297 * 25 23 21 28 28 H 1.48497 * 109.47264 * 325.98733 * 25 23 21 29 29 C 1.53039 * 109.54110 * 61.23941 * 14 13 12 30 30 C 1.46929 * 120.63061 * 184.90378 * 11 9 7 31 31 H 1.09005 * 109.46869 * 302.99980 * 1 2 3 32 32 H 1.08995 * 109.47289 * 62.99931 * 1 2 3 33 33 H 1.09002 * 109.47390 * 183.00489 * 1 2 3 34 34 H 1.09009 * 110.83859 * 102.22787 * 4 2 1 35 35 H 1.09003 * 110.97811 * 338.63181 * 4 2 1 36 36 H 1.08996 * 110.61772 * 278.60838 * 5 4 2 37 37 H 1.08998 * 110.62239 * 155.60722 * 5 4 2 38 38 H 1.08998 * 109.58644 * 353.41709 * 12 11 9 39 39 H 1.09007 * 109.58242 * 113.84237 * 12 11 9 40 40 H 1.08998 * 109.56873 * 185.55374 * 13 12 11 41 41 H 1.09000 * 109.38737 * 65.51009 * 13 12 11 42 42 H 1.08994 * 109.45733 * 301.21726 * 14 13 12 43 43 H 1.09004 * 110.71985 * 259.97671 * 17 15 14 44 44 H 1.09001 * 110.72090 * 23.24575 * 17 15 14 45 45 H 1.09000 * 111.00866 * 206.42258 * 18 17 15 46 46 H 1.09003 * 111.03884 * 82.58604 * 18 17 15 47 47 H 1.09001 * 110.36717 * 278.16675 * 19 18 17 48 48 H 1.09002 * 110.36753 * 155.84631 * 19 18 17 49 49 H 0.96999 * 120.00607 * 179.97438 * 24 23 21 50 50 H 1.09001 * 109.49754 * 178.68171 * 29 14 13 51 51 H 1.08996 * 109.52395 * 58.60119 * 29 14 13 52 52 H 1.08999 * 109.58434 * 246.15805 * 30 11 9 53 53 H 1.09000 * 109.58528 * 6.43617 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0738 -0.7867 -1.2214 5 6 3.2687 -1.5580 -0.6051 6 8 2.7977 -1.9108 0.7133 7 6 2.0693 -0.7781 1.2159 8 1 2.7330 -0.1401 1.7995 9 6 0.9227 -1.2460 2.0746 10 8 0.5551 -2.4003 2.0188 11 7 0.3095 -0.3830 2.9086 12 6 0.6795 1.0389 2.9191 13 6 1.0263 1.4524 4.3481 14 6 -0.1382 1.0986 5.2760 15 6 0.1944 1.5405 6.7026 16 1 1.0370 0.9626 7.0825 17 6 0.5355 3.0454 6.7199 18 6 -0.1132 3.5336 8.0420 19 6 -1.3904 2.6592 8.1032 20 7 -0.9760 1.3482 7.5712 21 6 -1.5815 0.1499 7.8410 22 1 -0.9815 -0.7226 8.0534 23 6 -2.9665 0.0566 7.8413 24 7 -3.5465 -1.1248 7.8451 25 14 -4.0071 1.6080 7.8363 26 1 -4.2015 2.0691 6.4381 27 1 -5.3280 1.3200 8.4506 28 1 -3.3191 2.6681 8.6160 29 6 -0.3708 -0.4138 5.2518 30 6 -0.7374 -0.8473 3.8290 31 1 -0.3633 0.5597 0.8619 32 1 -0.3633 0.4665 -0.9156 33 1 -0.3634 -1.0263 0.0539 34 1 2.4119 -0.1053 -2.0023 35 1 1.3230 -1.4763 -1.6072 36 1 4.1472 -0.9162 -0.5398 37 1 3.4885 -2.4534 -1.1865 38 1 1.5443 1.1962 2.2746 39 1 -0.1588 1.6372 2.5618 40 1 1.2065 2.5268 4.3838 41 1 1.9224 0.9222 4.6708 42 1 -1.0396 1.6101 4.9385 43 1 1.6149 3.1959 6.7412 44 1 0.0914 3.5514 5.8626 45 1 -0.3667 4.5922 7.9853 46 1 0.5374 3.3351 8.8938 47 1 -2.1753 3.0900 7.4816 48 1 -1.7330 2.5596 9.1332 49 1 -4.5143 -1.1900 7.8457 50 1 -1.1850 -0.6676 5.9307 51 1 0.5380 -0.9272 5.5658 52 1 -1.6934 -0.4060 3.5475 53 1 -0.8088 -1.9340 3.7828 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004550995.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:36 Heat of formation + Delta-G solvation = -64.981585 kcal Electronic energy + Delta-G solvation = -31791.794439 eV Core-core repulsion = 27856.470419 eV Total energy + Delta-G solvation = -3935.324020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.97695 -40.34570 -39.34120 -37.79289 -35.00147 -34.68333 -33.83985 -32.42730 -31.61898 -30.74922 -29.40715 -27.95309 -26.36044 -25.47185 -24.47827 -23.57805 -22.59553 -22.15028 -21.38292 -20.66693 -19.82756 -18.89317 -18.42895 -17.59408 -17.46502 -17.18155 -16.58929 -16.23179 -15.82104 -15.67110 -15.42464 -15.04047 -14.88560 -14.84918 -14.68084 -14.36800 -14.21294 -14.05530 -14.01396 -13.61536 -13.43960 -13.30667 -13.06753 -12.77977 -12.76251 -12.58529 -12.33813 -12.26365 -12.19864 -12.17713 -12.00464 -11.94312 -11.75017 -11.67828 -11.40270 -11.26251 -11.07825 -11.05808 -10.83056 -10.45379 -10.28945 -9.64460 -8.59821 -8.10639 -5.60604 1.37495 1.42103 1.47918 1.49373 1.85414 2.47199 2.98078 3.09217 3.31739 3.44372 3.46236 3.71024 3.87751 3.94476 3.97428 4.03223 4.15013 4.21299 4.23838 4.26349 4.29497 4.34525 4.41918 4.46495 4.53429 4.60913 4.63365 4.69980 4.75690 4.79723 4.82858 4.85266 4.88207 4.93034 5.02032 5.04408 5.05434 5.13076 5.14024 5.14772 5.24470 5.26356 5.35162 5.39070 5.42851 5.53040 5.72619 5.79546 5.86256 6.00933 6.22399 6.43026 6.93536 7.13674 7.60421 8.30368 9.02963 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017991 B = 0.003359 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.960559 B = 8332.637827 C = 9024.609081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.106 4.106 3 H 0.137 0.863 4 C -0.145 4.145 5 C 0.036 3.964 6 O -0.392 6.392 7 C 0.063 3.937 8 H 0.119 0.881 9 C 0.512 3.488 10 O -0.589 6.589 11 N -0.601 5.601 12 C 0.101 3.899 13 C -0.123 4.123 14 C -0.078 4.078 15 C 0.159 3.841 16 H 0.021 0.979 17 C -0.113 4.113 18 C -0.125 4.125 19 C 0.102 3.898 20 N -0.624 5.624 21 C -0.223 4.223 22 H 0.035 0.965 23 C -0.019 4.019 24 N -0.954 5.954 25 Si 0.918 3.082 26 H -0.287 1.287 27 H -0.320 1.320 28 H -0.199 1.199 29 C -0.126 4.126 30 C 0.125 3.875 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.023 0.977 34 H 0.119 0.881 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.020 0.980 48 H 0.037 0.963 49 H 0.259 0.741 50 H 0.079 0.921 51 H 0.032 0.968 52 H 0.060 0.940 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.142 14.782 -17.946 27.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.125 4.125 3 H 0.155 0.845 4 C -0.183 4.183 5 C -0.039 4.039 6 O -0.311 6.311 7 C 0.002 3.998 8 H 0.136 0.864 9 C 0.301 3.699 10 O -0.469 6.469 11 N -0.334 5.334 12 C -0.019 4.019 13 C -0.161 4.161 14 C -0.098 4.098 15 C 0.054 3.946 16 H 0.039 0.961 17 C -0.151 4.151 18 C -0.163 4.163 19 C -0.022 4.022 20 N -0.351 5.351 21 C -0.352 4.352 22 H 0.052 0.948 23 C -0.215 4.215 24 N -0.599 5.599 25 Si 0.746 3.254 26 H -0.214 1.214 27 H -0.250 1.250 28 H -0.121 1.121 29 C -0.164 4.164 30 C 0.002 3.998 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.042 0.958 34 H 0.137 0.863 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.134 0.866 39 H 0.104 0.896 40 H 0.131 0.869 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.115 0.885 44 H 0.104 0.896 45 H 0.112 0.888 46 H 0.086 0.914 47 H 0.038 0.962 48 H 0.055 0.945 49 H 0.067 0.933 50 H 0.097 0.903 51 H 0.051 0.949 52 H 0.078 0.922 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.820 13.830 -17.812 26.984 hybrid contribution -1.591 -0.864 0.618 1.913 sum 13.229 12.966 -17.194 25.273 Atomic orbital electron populations 1.22076 0.94763 1.00884 1.03832 1.22676 0.96438 1.01430 0.91925 0.84501 1.23314 0.97513 0.99521 0.97914 1.23908 0.97231 1.01034 0.81750 1.88975 1.70912 1.37690 1.33522 1.22985 0.91744 0.88639 0.96456 0.86415 1.21108 0.83839 0.84983 0.79975 1.90666 1.66812 1.20864 1.68580 1.48236 1.37883 1.10212 1.37097 1.22094 1.02470 0.78874 0.98512 1.21957 0.97386 1.03440 0.93364 1.21396 0.98187 0.93853 0.96402 1.21252 0.88591 0.95842 0.88938 0.96064 1.22634 1.01722 0.92937 0.97816 1.22745 0.95869 0.99332 0.98391 1.22446 0.96543 0.87161 0.96043 1.44783 1.35411 1.02070 1.52787 1.17980 0.88810 0.86578 1.41827 0.94780 1.26104 0.98581 0.98630 0.98188 1.69994 1.09848 1.25073 1.54956 0.86762 0.76649 0.82884 0.79106 1.21438 1.24961 1.12143 1.22024 1.01725 0.97638 0.95001 1.21353 0.89980 0.98953 0.89482 0.91460 0.89658 0.95757 0.86252 0.91931 0.89050 0.88377 0.86561 0.89600 0.86948 0.91881 0.92828 0.88547 0.89575 0.88820 0.91398 0.96226 0.94518 0.93263 0.90308 0.94883 0.92163 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 7.90 71.98 0.57 -2.38 16 2 C -0.11 -1.51 2.89 -9.69 -0.03 -1.54 16 3 H 0.14 0.83 8.04 -2.39 -0.02 0.81 16 4 C -0.15 -1.85 6.71 32.01 0.21 -1.63 16 5 C 0.04 0.56 7.72 72.66 0.56 1.12 16 6 O -0.39 -10.65 10.78 -130.79 -1.41 -12.06 16 7 C 0.06 1.40 2.91 30.22 0.09 1.49 16 8 H 0.12 1.93 6.95 -2.39 -0.02 1.91 16 9 C 0.51 16.65 4.88 87.66 0.43 17.08 16 10 O -0.59 -26.01 15.88 15.16 0.24 -25.77 16 11 N -0.60 -17.74 2.39 -819.73 -1.96 -19.70 16 12 C 0.10 1.93 4.71 86.22 0.41 2.33 16 13 C -0.12 -2.59 5.07 30.53 0.15 -2.44 16 14 C -0.08 -2.55 1.78 -10.76 -0.02 -2.57 16 15 C 0.16 5.57 2.82 45.34 0.13 5.69 16 16 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 17 C -0.11 -2.73 5.30 31.78 0.17 -2.57 16 18 C -0.13 -3.36 7.08 31.99 0.23 -3.13 16 19 C 0.10 3.90 4.41 86.86 0.38 4.29 16 20 N -0.62 -27.92 2.84 -668.26 -1.90 -29.82 16 21 C -0.22 -12.38 7.34 84.03 0.62 -11.76 16 22 H 0.03 2.19 8.01 -2.91 -0.02 2.16 16 23 C -0.02 -1.08 5.48 84.86 0.47 -0.62 16 24 N -0.95 -60.45 13.97 21.65 0.30 -60.14 16 25 Si 0.92 44.24 25.52 68.60 1.75 45.99 16 26 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 27 H -0.32 -16.16 7.11 99.48 0.71 -15.45 16 28 H -0.20 -8.31 4.14 99.48 0.41 -7.90 16 29 C -0.13 -5.19 5.02 30.67 0.15 -5.03 16 30 C 0.13 4.79 6.42 86.36 0.55 5.35 16 31 H 0.07 1.28 4.99 -2.38 -0.01 1.26 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.02 0.64 7.21 -2.39 -0.02 0.63 16 34 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.06 1.04 7.88 -2.39 -0.02 1.02 16 36 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.12 1.33 5.14 -2.39 -0.01 1.31 16 39 H 0.09 1.43 7.50 -2.38 -0.02 1.41 16 40 H 0.11 1.59 6.73 -2.39 -0.02 1.57 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 43 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.09 1.77 7.32 -2.39 -0.02 1.75 16 45 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 46 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.02 0.78 5.33 -2.39 -0.01 0.76 16 48 H 0.04 1.51 6.81 -2.39 -0.02 1.49 16 49 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 50 H 0.08 4.13 5.04 -2.39 -0.01 4.12 16 51 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 52 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 53 H 0.05 2.33 7.03 -2.39 -0.02 2.32 16 Total: -1.00 -82.22 378.20 2.69 -79.53 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.59 Total: 18.30 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 5.07 Total: 3.68 kcal Atomic # 7 Polarization: -106.11 SS G_CDS: -3.56 Total: -109.67 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -1.17 Total: -37.83 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.75 Total: 45.99 kcal Total: -82.22 2.69 -79.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004550995.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.549 kcal (2) G-P(sol) polarization free energy of solvation -82.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds