Wall clock time and date at job start Tue Mar 31 2020 20:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46970 * 2 1 4 4 C 1.52992 * 109.47270 * 239.99937 * 2 1 3 5 5 C 1.53001 * 109.47489 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46945 * 59.99619 * 5 4 2 7 7 C 1.52995 * 109.47293 * 300.00106 * 6 5 4 8 8 H 1.09003 * 109.47498 * 300.00318 * 7 6 5 9 9 O 1.42899 * 109.47404 * 179.97438 * 7 6 5 10 10 C 1.42900 * 114.00127 * 90.00089 * 9 7 6 11 11 C 1.50694 * 109.47618 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00060 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00465 * 179.97438 * 11 10 9 14 14 C 1.47168 * 120.71362 * 180.02562 * 13 11 10 15 15 C 1.53879 * 108.03077 * 132.75941 * 14 13 11 16 16 H 1.08995 * 112.09597 * 181.91070 * 15 14 13 17 17 C 1.54551 * 107.83006 * 306.50625 * 15 14 13 18 18 C 1.54278 * 104.84892 * 89.07478 * 17 15 14 19 19 C 1.54546 * 104.85250 * 359.97438 * 18 17 15 20 20 H 1.09001 * 112.18177 * 146.40887 * 19 18 17 21 21 C 1.47160 * 120.70821 * 359.72536 * 13 11 10 22 22 N 1.48310 * 107.21044 * 58.36074 * 15 14 13 23 23 C 1.36943 * 128.07623 * 106.69831 * 22 15 14 24 24 H 1.08004 * 119.99744 * 14.96744 * 23 22 15 25 25 C 1.38806 * 119.99899 * 194.96018 * 23 22 15 26 26 N 1.31618 * 120.00441 * 9.27714 * 25 23 22 27 27 Si 1.86809 * 119.99755 * 189.27574 * 25 23 22 28 28 H 1.48496 * 109.47087 * 60.00479 * 27 25 23 29 29 H 1.48498 * 109.46957 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.46898 * 300.00199 * 27 25 23 31 31 C 1.53000 * 109.46871 * 119.99736 * 2 1 3 32 32 H 1.08993 * 109.46820 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47058 * 300.00268 * 1 2 3 34 34 H 1.08995 * 109.46740 * 60.00232 * 1 2 3 35 35 H 1.08995 * 109.47576 * 59.99705 * 4 2 1 36 36 H 1.09003 * 109.47175 * 299.99937 * 4 2 1 37 37 H 1.08995 * 109.47668 * 180.02562 * 5 4 2 38 38 H 1.09003 * 109.46677 * 300.00017 * 5 4 2 39 39 H 1.08993 * 109.47286 * 60.00738 * 6 5 4 40 40 H 1.09004 * 109.47171 * 180.02562 * 6 5 4 41 41 H 1.08998 * 109.47205 * 300.00632 * 10 9 7 42 42 H 1.09002 * 109.47066 * 59.99957 * 10 9 7 43 43 H 1.09002 * 109.74631 * 252.39259 * 14 13 11 44 44 H 1.08999 * 109.74667 * 13.07183 * 14 13 11 45 45 H 1.09005 * 110.36137 * 207.91501 * 17 15 14 46 46 H 1.08997 * 110.36058 * 330.22713 * 17 15 14 47 47 H 1.08998 * 110.36177 * 241.15095 * 18 17 15 48 48 H 1.09000 * 110.45666 * 118.88877 * 18 17 15 49 49 H 1.09001 * 109.74970 * 346.87662 * 21 13 11 50 50 H 1.09002 * 109.75213 * 107.60327 * 21 13 11 51 51 H 0.96993 * 120.00212 * 179.97438 * 26 25 23 52 52 H 1.08993 * 109.47286 * 60.00424 * 31 2 1 53 53 H 1.08999 * 109.47276 * 299.99863 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5701 -0.7218 -1.2489 6 6 4.0795 -1.4433 0.0004 7 6 3.5696 -0.7221 1.2496 8 1 3.9333 0.3055 1.2498 9 8 4.0449 -1.3963 2.4164 10 6 5.3047 -0.9176 2.8917 11 6 5.7076 -1.6954 4.1179 12 8 4.9870 -2.5736 4.5428 13 7 6.8690 -1.4159 4.7419 14 6 7.2780 -2.1660 5.9401 15 6 8.7480 -2.5844 5.7615 16 1 9.1108 -3.1763 6.6018 17 6 8.8675 -3.3289 4.4124 18 6 9.1587 -2.2241 3.3756 19 6 9.1880 -0.9123 4.1922 20 1 9.9039 -0.1943 3.7920 21 6 7.7585 -0.3585 4.2357 22 7 9.5370 -1.3436 5.5679 23 6 10.3883 -0.7374 6.4528 24 1 10.7371 -1.2758 7.3217 25 6 10.8031 0.5689 6.2330 26 7 10.2424 1.2863 5.2826 27 14 12.1571 1.3086 7.2861 28 1 13.3979 0.5075 7.1315 29 1 12.4127 2.7061 6.8538 30 1 11.7367 1.3005 8.7103 31 6 2.0400 -0.7212 1.2493 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3632 0.5138 -0.8900 35 1 1.6768 -0.2075 -2.1392 36 1 1.6768 -1.7489 -1.2492 37 1 3.9335 -1.2352 -2.1390 38 1 3.9337 0.3058 -1.2487 39 1 3.7159 -2.4708 0.0002 40 1 5.1696 -1.4434 0.0009 41 1 6.0589 -1.0473 2.1155 42 1 5.2203 0.1396 3.1431 43 1 7.1797 -1.5332 6.8222 44 1 6.6529 -3.0520 6.0511 45 1 9.6894 -4.0441 4.4454 46 1 7.9321 -3.8353 4.1745 47 1 8.3665 -2.1874 2.6279 48 1 10.1231 -2.3951 2.8973 49 1 7.4479 -0.0645 3.2331 50 1 7.7213 0.5040 4.9011 51 1 10.5320 2.1992 5.1293 52 1 1.6767 -1.7488 1.2493 53 1 1.6767 -0.2073 2.1392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029497442.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:02 Heat of formation + Delta-G solvation = -79.339201 kcal Electronic energy + Delta-G solvation = -30892.085176 eV Core-core repulsion = 26956.138563 eV Total energy + Delta-G solvation = -3935.946613 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.64479 -40.34841 -39.31222 -37.53214 -35.40905 -34.26191 -33.21858 -32.43622 -31.20556 -31.02940 -29.10457 -27.34064 -27.22733 -25.40937 -25.25365 -23.33674 -22.19155 -21.59397 -21.22874 -20.72027 -20.21921 -18.73945 -18.00257 -17.47105 -17.11952 -16.89957 -16.46914 -16.26281 -15.95071 -15.54223 -15.50554 -15.18098 -14.90178 -14.70736 -14.46574 -14.41351 -14.03741 -13.80946 -13.54975 -13.39016 -13.29039 -13.25400 -13.21782 -12.87245 -12.73568 -12.70754 -12.57457 -12.41208 -12.01923 -11.95416 -11.84987 -11.82930 -11.48190 -11.45302 -11.40819 -11.30074 -11.27464 -11.13606 -10.89315 -10.56268 -10.41500 -9.74497 -8.70531 -7.84586 -5.18654 1.51386 1.52248 1.57952 1.59585 1.78791 2.51938 2.81597 3.34915 3.47600 3.56670 3.75144 3.81182 4.02058 4.07907 4.10367 4.11988 4.15796 4.21357 4.22968 4.25013 4.30183 4.34699 4.43334 4.52818 4.53835 4.54663 4.66343 4.71968 4.78297 4.80547 4.85994 4.97696 5.00103 5.03009 5.06492 5.07058 5.09824 5.14593 5.15726 5.29940 5.30868 5.33011 5.34989 5.40546 5.41751 5.55418 5.57886 5.61793 5.82429 6.17431 6.24411 6.53849 7.09608 7.18600 7.73101 8.52515 9.27002 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019207 B = 0.002612 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.423639 B =10716.637259 C =11127.093569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 H 0.077 0.923 4 C -0.115 4.115 5 C -0.113 4.113 6 C -0.140 4.140 7 C 0.082 3.918 8 H 0.073 0.927 9 O -0.385 6.385 10 C 0.054 3.946 11 C 0.508 3.492 12 O -0.580 6.580 13 N -0.590 5.590 14 C 0.109 3.891 15 C 0.130 3.870 16 H 0.083 0.917 17 C -0.114 4.114 18 C -0.127 4.127 19 C 0.162 3.838 20 H 0.093 0.907 21 C 0.115 3.885 22 N -0.603 5.603 23 C -0.236 4.236 24 H 0.073 0.927 25 C -0.049 4.049 26 N -0.932 5.932 27 Si 0.969 3.031 28 H -0.283 1.283 29 H -0.294 1.294 30 H -0.285 1.285 31 C -0.108 4.108 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.043 0.957 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.059 0.941 49 H 0.091 0.909 50 H 0.051 0.949 51 H 0.250 0.750 52 H 0.059 0.941 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.288 -1.681 -14.539 19.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 H 0.095 0.905 4 C -0.152 4.152 5 C -0.151 4.151 6 C -0.178 4.178 7 C 0.025 3.975 8 H 0.091 0.909 9 O -0.304 6.304 10 C -0.025 4.025 11 C 0.296 3.704 12 O -0.461 6.461 13 N -0.322 5.322 14 C -0.016 4.016 15 C 0.023 3.977 16 H 0.101 0.899 17 C -0.153 4.153 18 C -0.166 4.166 19 C 0.055 3.945 20 H 0.111 0.889 21 C -0.009 4.009 22 N -0.325 5.325 23 C -0.365 4.365 24 H 0.091 0.909 25 C -0.243 4.243 26 N -0.579 5.579 27 Si 0.798 3.202 28 H -0.210 1.210 29 H -0.221 1.221 30 H -0.211 1.211 31 C -0.146 4.146 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.116 0.884 42 H 0.110 0.890 43 H 0.062 0.938 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.086 0.914 48 H 0.078 0.922 49 H 0.109 0.891 50 H 0.069 0.931 51 H 0.059 0.941 52 H 0.078 0.922 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.620 -2.053 -14.156 19.751 hybrid contribution 0.980 0.732 1.005 1.583 sum -12.641 -1.321 -13.151 18.289 Atomic orbital electron populations 1.21804 0.94204 1.02009 1.02251 1.21091 0.96252 0.99559 0.93470 0.90477 1.21635 0.95146 1.00790 0.97631 1.21487 0.95922 1.00988 0.96683 1.22030 1.00868 1.00144 0.94746 1.22395 0.95275 0.95771 0.84078 0.90912 1.88004 1.35172 1.61572 1.45644 1.22248 0.88097 0.97823 0.94370 1.20742 0.80534 0.83735 0.85359 1.90630 1.53057 1.34450 1.67916 1.48143 1.19388 1.36501 1.28214 1.22203 0.97440 0.95677 0.86266 1.22135 0.89096 0.89066 0.97437 0.89855 1.22373 1.00593 0.97329 0.94967 1.22568 1.00683 0.96012 0.97342 1.21749 0.93249 0.94432 0.85050 0.88932 1.22284 0.91322 0.88711 0.98539 1.45344 1.49129 1.25823 1.12211 1.19213 1.18615 0.94690 1.03944 0.90873 1.25419 1.02206 0.96123 1.00585 1.69938 1.43936 1.08942 1.35113 0.85313 0.79656 0.76932 0.78256 1.20967 1.22065 1.21115 1.21634 0.92724 1.01400 0.98865 0.92822 0.92757 0.91338 0.90348 0.92207 0.90690 0.91106 0.92239 0.91753 0.88391 0.88951 0.93830 0.90282 0.91506 0.92115 0.91365 0.92195 0.89082 0.93072 0.94081 0.92216 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.19 71.98 0.66 -1.15 16 2 C -0.09 -1.21 2.72 -10.79 -0.03 -1.24 16 3 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.11 -1.45 5.20 30.59 0.16 -1.30 16 5 C -0.11 -1.54 5.92 30.59 0.18 -1.36 16 6 C -0.14 -2.62 5.54 30.59 0.17 -2.45 16 7 C 0.08 1.77 2.61 30.58 0.08 1.85 16 8 H 0.07 1.38 7.79 -2.39 -0.02 1.36 16 9 O -0.38 -11.57 9.52 -129.94 -1.24 -12.80 16 10 C 0.05 1.53 4.61 71.23 0.33 1.86 16 11 C 0.51 18.71 7.78 87.66 0.68 19.39 16 12 O -0.58 -25.53 15.97 16.00 0.26 -25.28 16 13 N -0.59 -22.10 2.26 -816.02 -1.85 -23.94 16 14 C 0.11 4.28 5.90 86.55 0.51 4.79 16 15 C 0.13 5.12 4.32 45.47 0.20 5.31 16 16 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 17 C -0.11 -3.90 6.18 31.56 0.20 -3.71 16 18 C -0.13 -4.40 6.18 31.55 0.20 -4.20 16 19 C 0.16 6.80 3.11 45.29 0.14 6.94 16 20 H 0.09 4.44 6.36 -2.39 -0.02 4.42 16 21 C 0.12 4.37 5.66 86.38 0.49 4.86 16 22 N -0.60 -27.99 2.81 -637.59 -1.79 -29.79 16 23 C -0.24 -12.18 10.37 84.03 0.87 -11.31 16 24 H 0.07 3.72 7.85 -2.91 -0.02 3.69 16 25 C -0.05 -2.52 5.42 84.86 0.46 -2.06 16 26 N -0.93 -49.46 10.42 21.65 0.23 -49.24 16 27 Si 0.97 43.07 29.56 68.60 2.03 45.10 16 28 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 29 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 30 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 31 C -0.11 -2.14 4.85 30.58 0.15 -1.99 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.06 1.19 7.87 -2.38 -0.02 1.18 16 41 H 0.10 2.34 7.31 -2.39 -0.02 2.32 16 42 H 0.09 2.32 8.01 -2.39 -0.02 2.30 16 43 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.08 3.04 7.11 -2.39 -0.02 3.02 16 45 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 46 H 0.06 2.04 7.84 -2.39 -0.02 2.02 16 47 H 0.07 2.09 7.83 -2.39 -0.02 2.07 16 48 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.09 2.80 6.09 -2.39 -0.01 2.79 16 50 H 0.05 2.31 7.83 -2.39 -0.02 2.29 16 51 H 0.25 13.07 8.31 -92.71 -0.77 12.30 16 52 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 53 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -62.73 399.75 3.93 -58.80 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.86 Total: 22.92 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: 5.44 Total: 14.24 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -3.41 Total: -102.97 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -0.98 Total: -38.08 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -62.73 3.93 -58.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029497442.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.543 kcal (2) G-P(sol) polarization free energy of solvation -62.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds