Wall clock time and date at job start Tue Mar 31 2020 19:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46923 * 2 1 4 4 C 1.53002 * 109.46764 * 120.00009 * 2 1 3 5 5 C 1.53005 * 109.47135 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47099 * 300.00255 * 5 4 2 7 7 C 1.53005 * 109.47272 * 59.99491 * 6 5 4 8 8 C 1.52996 * 109.47491 * 300.00410 * 7 6 5 9 9 H 1.09002 * 109.47002 * 299.99842 * 8 7 6 10 10 O 1.42896 * 109.47598 * 179.97438 * 8 7 6 11 11 C 1.42905 * 114.00174 * 89.99157 * 10 8 7 12 12 C 1.50704 * 109.46934 * 180.02562 * 11 10 8 13 13 O 1.21272 * 120.00028 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99769 * 180.02562 * 12 11 10 15 15 C 1.47622 * 120.90065 * 359.31607 * 14 12 11 16 16 C 1.53883 * 107.50285 * 132.49493 * 15 14 12 17 17 H 1.09005 * 112.09569 * 182.66366 * 16 15 14 18 18 C 1.54547 * 108.36881 * 307.00329 * 16 15 14 19 19 C 1.54277 * 104.84779 * 89.29662 * 18 16 15 20 20 C 1.54961 * 104.80987 * 359.81703 * 19 18 16 21 21 H 1.08997 * 112.26062 * 146.60783 * 20 19 18 22 22 C 1.47159 * 120.71016 * 179.97438 * 14 12 11 23 23 N 1.48305 * 107.21009 * 59.11079 * 16 15 14 24 24 C 1.36942 * 128.07845 * 106.09746 * 23 16 15 25 25 H 1.07995 * 119.99667 * 15.26117 * 24 23 16 26 26 C 1.38803 * 119.99950 * 195.26009 * 24 23 16 27 27 N 1.31621 * 120.00458 * 9.77826 * 26 24 23 28 28 Si 1.86807 * 119.99826 * 189.77494 * 26 24 23 29 29 H 1.48497 * 109.47022 * 179.97438 * 28 26 24 30 30 H 1.48491 * 109.47213 * 300.00206 * 28 26 24 31 31 H 1.48499 * 109.46892 * 60.00032 * 28 26 24 32 32 H 1.09008 * 109.47046 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47136 * 300.00270 * 1 2 3 34 34 H 1.09001 * 109.46880 * 59.99963 * 1 2 3 35 35 H 1.09003 * 109.47373 * 300.00442 * 4 2 1 36 36 H 1.09002 * 109.47144 * 59.99943 * 4 2 1 37 37 H 1.09002 * 109.46413 * 60.00220 * 5 4 2 38 38 H 1.08989 * 109.46908 * 180.02562 * 5 4 2 39 39 H 1.08999 * 109.47282 * 179.97438 * 6 5 4 40 40 H 1.08997 * 109.47197 * 300.00202 * 6 5 4 41 41 H 1.09003 * 109.47310 * 179.97438 * 7 6 5 42 42 H 1.09002 * 109.46868 * 60.00334 * 7 6 5 43 43 H 1.08996 * 109.46663 * 60.00784 * 11 10 8 44 44 H 1.08996 * 109.47434 * 300.00633 * 11 10 8 45 45 H 1.09005 * 109.38702 * 13.37755 * 15 14 12 46 46 H 1.09005 * 110.63686 * 252.32061 * 15 14 12 47 47 H 1.08999 * 110.36966 * 208.13950 * 18 16 15 48 48 H 1.09001 * 110.36333 * 330.45602 * 18 16 15 49 49 H 1.08996 * 110.36720 * 118.85034 * 19 18 16 50 50 H 1.09007 * 110.36684 * 241.05202 * 19 18 16 51 51 H 1.09004 * 109.74980 * 107.60774 * 22 14 12 52 52 H 1.08999 * 109.78937 * 346.90427 * 22 14 12 53 53 H 0.96999 * 119.99894 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7219 1.2490 6 6 4.0795 -1.4434 -0.0002 7 6 3.5695 -0.7222 -1.2495 8 6 2.0395 -0.7216 -1.2492 9 1 1.6758 -1.7491 -1.2490 10 8 1.5632 -0.0475 -2.4157 11 6 1.3690 -0.9036 -3.5433 12 6 0.8689 -0.0917 -4.7102 13 8 0.6962 1.1025 -4.5884 14 7 0.6135 -0.6927 -5.8892 15 6 0.8309 -2.1424 -6.0639 16 6 -0.4240 -2.7202 -6.7416 17 1 -0.3622 -3.8015 -6.8651 18 6 -1.6611 -2.2969 -5.9177 19 6 -2.0917 -0.9427 -6.5185 20 6 -1.0696 -0.6686 -7.6505 21 1 -1.5160 -0.1349 -8.4895 22 6 0.1241 0.0849 -7.0387 23 7 -0.5865 -2.0165 -8.0369 24 6 -0.3419 -2.4972 -9.2957 25 1 -0.2259 -3.5590 -9.4551 26 6 -0.2432 -1.6196 -10.3666 27 7 -0.1915 -0.3221 -10.1517 28 14 -0.1836 -2.2802 -12.1130 29 1 -0.0792 -1.1473 -13.0674 30 1 0.9969 -3.1678 -12.2664 31 1 -1.4219 -3.0505 -12.3933 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.6765 -0.2075 2.1393 36 1 1.6766 -1.7489 1.2493 37 1 3.9336 0.3057 1.2489 38 1 3.9332 -1.2361 2.1387 39 1 5.1695 -1.4435 -0.0006 40 1 3.7158 -2.4709 0.0000 41 1 3.9329 -1.2360 -2.1395 42 1 3.9332 0.3053 -1.2497 43 1 0.6369 -1.6717 -3.2943 44 1 2.3151 -1.3756 -3.8083 45 1 0.9698 -2.6076 -5.0879 46 1 1.7050 -2.3272 -6.6884 47 1 -2.4592 -3.0312 -6.0270 48 1 -1.3949 -2.1784 -4.8674 49 1 -3.1014 -1.0111 -6.9231 50 1 -2.0390 -0.1586 -5.7630 51 1 0.9164 0.1836 -7.7808 52 1 -0.1949 1.0729 -6.7070 53 1 -0.1229 0.2911 -10.9002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029499102.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:10 Heat of formation + Delta-G solvation = -78.839682 kcal Electronic energy + Delta-G solvation = -31132.922203 eV Core-core repulsion = 27196.997251 eV Total energy + Delta-G solvation = -3935.924952 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.58920 -40.40676 -39.27105 -37.24231 -35.43588 -34.15974 -33.48123 -32.40710 -31.16667 -30.94674 -29.21980 -27.43426 -26.89213 -25.48205 -25.16378 -23.27038 -22.20322 -21.55443 -21.23143 -20.79921 -20.17132 -18.70405 -18.02184 -17.47751 -17.28052 -16.71934 -16.51084 -16.24683 -15.70901 -15.55241 -15.38931 -15.15711 -14.81723 -14.67317 -14.50196 -14.42138 -14.05196 -13.89137 -13.55595 -13.42534 -13.28343 -13.23255 -13.07912 -12.84400 -12.75647 -12.68020 -12.59588 -12.43113 -12.02040 -11.97460 -11.81627 -11.74901 -11.50695 -11.48931 -11.43464 -11.29504 -11.15663 -11.13206 -10.81628 -10.56445 -10.35129 -9.74007 -8.70677 -7.84085 -5.19850 1.49605 1.51444 1.57498 1.64231 1.81928 2.51676 2.86827 3.35544 3.48411 3.57863 3.77592 3.80371 4.02279 4.07171 4.12603 4.14246 4.19813 4.25888 4.28100 4.30973 4.32080 4.33763 4.40612 4.52509 4.56271 4.59123 4.61301 4.73117 4.79595 4.87499 4.93540 4.98543 5.00921 5.07449 5.08440 5.09700 5.12768 5.17328 5.20716 5.28021 5.31097 5.33503 5.40201 5.41019 5.45343 5.54002 5.56693 5.58467 5.83091 6.21991 6.24791 6.59983 7.06230 7.23697 7.74393 8.53012 9.27415 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024057 B = 0.002616 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.627429 B =10702.360926 C =10947.309706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 H 0.058 0.942 4 C -0.106 4.106 5 C -0.123 4.123 6 C -0.112 4.112 7 C -0.143 4.143 8 C 0.089 3.911 9 H 0.080 0.920 10 O -0.384 6.384 11 C 0.056 3.944 12 C 0.503 3.497 13 O -0.586 6.586 14 N -0.592 5.592 15 C 0.097 3.903 16 C 0.127 3.873 17 H 0.099 0.901 18 C -0.110 4.110 19 C -0.129 4.129 20 C 0.167 3.833 21 H 0.077 0.923 22 C 0.131 3.869 23 N -0.604 5.604 24 C -0.230 4.230 25 H 0.085 0.915 26 C -0.059 4.059 27 N -0.940 5.940 28 Si 0.971 3.029 29 H -0.302 1.302 30 H -0.277 1.277 31 H -0.281 1.281 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.037 0.963 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.115 0.885 46 H 0.056 0.944 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.053 0.947 50 H 0.050 0.950 51 H 0.039 0.961 52 H 0.051 0.949 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.724 -7.718 23.267 24.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 H 0.076 0.924 4 C -0.143 4.143 5 C -0.160 4.160 6 C -0.150 4.150 7 C -0.181 4.181 8 C 0.032 3.968 9 H 0.098 0.902 10 O -0.303 6.303 11 C -0.023 4.023 12 C 0.292 3.708 13 O -0.467 6.467 14 N -0.325 5.325 15 C -0.027 4.027 16 C 0.020 3.980 17 H 0.117 0.883 18 C -0.149 4.149 19 C -0.169 4.169 20 C 0.059 3.941 21 H 0.095 0.905 22 C 0.006 3.994 23 N -0.326 5.326 24 C -0.359 4.359 25 H 0.103 0.897 26 C -0.253 4.253 27 N -0.588 5.588 28 Si 0.801 3.199 29 H -0.229 1.229 30 H -0.203 1.203 31 H -0.207 1.207 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.125 0.875 44 H 0.115 0.885 45 H 0.133 0.867 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.095 0.905 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.057 0.943 52 H 0.069 0.931 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.635 -6.869 23.064 24.507 hybrid contribution 0.203 0.401 -1.812 1.867 sum 4.838 -6.468 21.252 22.735 Atomic orbital electron populations 1.21747 0.94801 1.02154 1.01370 1.21200 0.96129 0.99634 0.93619 0.92370 1.21564 0.95641 1.01078 0.96042 1.21589 0.95405 1.00759 0.98241 1.21484 1.00823 0.99563 0.93082 1.22061 0.95362 1.01207 0.99464 1.22416 0.93552 0.96491 0.84350 0.90201 1.88031 1.86866 1.35373 1.20066 1.22274 1.02426 0.92305 0.85283 1.20969 0.77645 0.87922 0.84282 1.90647 1.54662 1.17460 1.83923 1.48278 1.63855 1.10083 1.10276 1.22736 0.99394 0.78602 1.01992 1.22261 0.92985 0.97115 0.85647 0.88301 1.22405 0.97831 0.95979 0.98649 1.22581 0.98620 0.98012 0.97638 1.21755 0.90960 0.87465 0.93930 0.90537 1.21876 0.97920 0.93845 0.85750 1.45359 1.75616 1.10794 1.00815 1.19301 1.41193 0.92127 0.83303 0.89744 1.25563 1.02428 0.95746 1.01535 1.70044 1.56827 1.01744 1.30166 0.85263 0.78024 0.76492 0.80133 1.22903 1.20347 1.20697 0.91761 0.91838 0.94418 0.90657 0.90629 0.92634 0.90266 0.91107 0.90664 0.91728 0.92866 0.87516 0.88530 0.86718 0.92514 0.90995 0.90469 0.92772 0.93121 0.94259 0.93059 0.94503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.05 71.98 0.65 -2.00 16 2 C -0.09 -1.57 2.46 -10.79 -0.03 -1.59 16 3 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.11 -1.28 5.20 30.60 0.16 -1.12 16 5 C -0.12 -1.39 5.92 30.59 0.18 -1.21 16 6 C -0.11 -1.36 5.92 30.59 0.18 -1.17 16 7 C -0.14 -2.50 5.54 30.59 0.17 -2.33 16 8 C 0.09 1.72 2.04 30.59 0.06 1.78 16 9 H 0.08 1.21 7.79 -2.39 -0.02 1.20 16 10 O -0.38 -10.82 8.84 -129.94 -1.15 -11.97 16 11 C 0.06 1.42 4.61 71.24 0.33 1.75 16 12 C 0.50 18.44 7.78 87.66 0.68 19.12 16 13 O -0.59 -27.26 15.97 16.03 0.26 -27.01 16 14 N -0.59 -22.09 2.24 -813.89 -1.82 -23.92 16 15 C 0.10 2.96 5.89 86.46 0.51 3.47 16 16 C 0.13 4.33 4.27 45.47 0.19 4.53 16 17 H 0.10 2.99 8.14 -2.38 -0.02 2.97 16 18 C -0.11 -3.36 6.18 31.55 0.20 -3.17 16 19 C -0.13 -4.92 6.21 31.70 0.20 -4.72 16 20 C 0.17 7.76 3.14 45.60 0.14 7.90 16 21 H 0.08 4.20 6.37 -2.39 -0.02 4.18 16 22 C 0.13 6.06 5.81 86.54 0.50 6.56 16 23 N -0.60 -27.89 2.80 -636.01 -1.78 -29.67 16 24 C -0.23 -11.83 10.37 84.03 0.87 -10.96 16 25 H 0.08 4.10 7.85 -2.91 -0.02 4.07 16 26 C -0.06 -3.15 5.41 84.86 0.46 -2.69 16 27 N -0.94 -54.05 10.43 21.65 0.23 -53.82 16 28 Si 0.97 44.07 29.57 68.60 2.03 46.10 16 29 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 30 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 31 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 32 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.04 0.92 7.68 -2.39 -0.02 0.90 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 36 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 1.10 7.87 -2.39 -0.02 1.09 16 42 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.11 2.00 7.56 -2.39 -0.02 1.98 16 44 H 0.10 1.99 7.78 -2.39 -0.02 1.97 16 45 H 0.11 2.33 6.09 -2.38 -0.01 2.32 16 46 H 0.06 1.91 8.14 -2.38 -0.02 1.90 16 47 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.08 1.98 7.86 -2.39 -0.02 1.96 16 49 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.05 1.93 7.85 -2.38 -0.02 1.92 16 51 H 0.04 2.11 7.82 -2.39 -0.02 2.09 16 52 H 0.05 2.50 7.11 -2.39 -0.02 2.48 16 53 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -69.78 398.91 4.08 -65.70 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.86 Total: 20.44 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 5.46 Total: 14.14 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -3.38 Total: -107.41 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -0.89 Total: -38.97 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -69.78 4.08 -65.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029499102.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.136 kcal (2) G-P(sol) polarization free energy of solvation -69.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds