Wall clock time and date at job start Tue Mar 31 2020 19:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47647 * 2 1 4 4 C 1.53007 * 109.47026 * 239.99667 * 2 1 3 5 5 C 1.53005 * 109.47014 * 180.02562 * 4 2 1 6 6 C 1.52990 * 109.47403 * 60.00004 * 5 4 2 7 7 C 1.53002 * 109.47295 * 300.00196 * 6 5 4 8 8 C 1.52997 * 109.47251 * 59.99687 * 7 6 5 9 9 H 1.09008 * 109.47071 * 60.00138 * 8 7 6 10 10 O 1.42900 * 109.47167 * 180.02562 * 8 7 6 11 11 C 1.42901 * 114.00032 * 270.00128 * 10 8 7 12 12 C 1.50700 * 109.47223 * 180.02562 * 11 10 8 13 13 O 1.21278 * 119.99968 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00093 * 179.97438 * 12 11 10 15 15 C 1.47172 * 120.70740 * 0.02562 * 14 12 11 16 16 C 1.54488 * 108.00435 * 132.63697 * 15 14 12 17 17 H 1.09000 * 112.34782 * 181.98270 * 16 15 14 18 18 C 1.54550 * 107.85294 * 306.76168 * 16 15 14 19 19 C 1.53736 * 104.95341 * 88.86322 * 18 16 15 20 20 C 1.54543 * 104.95444 * 359.97438 * 19 18 16 21 21 H 1.09003 * 112.68816 * 146.56526 * 20 19 18 22 22 C 1.47163 * 120.71096 * 179.97438 * 14 12 11 23 23 N 1.48306 * 106.90083 * 58.48532 * 16 15 14 24 24 C 1.36943 * 128.07355 * 106.80299 * 23 16 15 25 25 H 1.08000 * 119.99849 * 164.63988 * 24 23 16 26 26 C 1.38807 * 119.99961 * 344.63940 * 24 23 16 27 27 N 1.31621 * 120.00221 * 350.72579 * 26 24 23 28 28 Si 1.86797 * 119.99844 * 170.73061 * 26 24 23 29 29 H 1.48507 * 109.46868 * 269.99453 * 28 26 24 30 30 H 1.48497 * 109.47252 * 29.99602 * 28 26 24 31 31 H 1.48502 * 109.47314 * 149.99998 * 28 26 24 32 32 H 1.09000 * 109.46766 * 300.00218 * 1 2 3 33 33 H 1.09003 * 109.46684 * 59.99584 * 1 2 3 34 34 H 1.08995 * 109.47251 * 180.02562 * 1 2 3 35 35 H 1.09003 * 109.46778 * 60.00806 * 4 2 1 36 36 H 1.08995 * 109.47116 * 300.00095 * 4 2 1 37 37 H 1.09005 * 109.46694 * 299.99781 * 5 4 2 38 38 H 1.08996 * 109.46811 * 180.02562 * 5 4 2 39 39 H 1.08995 * 109.47295 * 179.97438 * 6 5 4 40 40 H 1.09008 * 109.46918 * 59.99992 * 6 5 4 41 41 H 1.08999 * 109.46876 * 299.99574 * 7 6 5 42 42 H 1.08998 * 109.47399 * 179.97438 * 7 6 5 43 43 H 1.08998 * 109.47448 * 59.99622 * 11 10 8 44 44 H 1.09000 * 109.47127 * 299.99922 * 11 10 8 45 45 H 1.08995 * 109.74426 * 252.36440 * 15 14 12 46 46 H 1.08994 * 109.75328 * 13.05086 * 15 14 12 47 47 H 1.08995 * 110.36058 * 207.57665 * 18 16 15 48 48 H 1.08994 * 110.36569 * 329.78386 * 18 16 15 49 49 H 1.08997 * 110.41827 * 241.06552 * 19 18 16 50 50 H 1.08997 * 110.20851 * 118.81852 * 19 18 16 51 51 H 1.09005 * 109.74382 * 107.63068 * 22 14 12 52 52 H 1.08994 * 109.74704 * 346.90452 * 22 14 12 53 53 H 0.97001 * 120.00222 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0002 7 6 3.5695 -0.7221 1.2495 8 6 2.0396 -0.7216 1.2492 9 1 1.6758 -1.7492 1.2490 10 8 1.5633 -0.0474 2.4157 11 6 1.3690 -0.9036 3.5433 12 6 0.8677 -0.0919 4.7099 13 8 0.6944 1.1022 4.5879 14 7 0.6121 -0.6930 5.8887 15 6 0.8175 -2.1409 6.0542 16 6 1.6009 -2.3651 7.3667 17 1 1.8229 -3.4178 7.5422 18 6 2.8726 -1.4884 7.3152 19 6 2.4467 -0.1364 7.9105 20 6 0.9539 -0.3116 8.2702 21 1 0.6662 0.2526 9.1574 22 6 0.1227 0.0845 7.0383 23 7 0.7904 -1.7737 8.4589 24 6 0.0651 -2.4255 9.4204 25 1 -0.2743 -1.8914 10.2955 26 6 -0.2338 -3.7727 9.2701 27 7 0.0172 -4.3793 8.1293 28 14 -0.9923 -4.7247 10.6870 29 1 0.0860 -5.3122 11.5221 30 1 -1.8157 -3.8075 11.5152 31 1 -1.8502 -5.8115 10.1502 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 1.6767 -0.2074 -2.1393 36 1 1.6766 -1.7490 -1.2492 37 1 3.9337 0.3057 -1.2488 38 1 3.9333 -1.2354 -2.1391 39 1 5.1695 -1.4442 0.0002 40 1 3.7158 -2.4710 0.0001 41 1 3.9333 0.3054 1.2497 42 1 3.9322 -1.2364 2.1395 43 1 2.3150 -1.3756 3.8083 44 1 0.6369 -1.6718 3.2943 45 1 -0.1469 -2.6459 6.1081 46 1 1.3906 -2.5302 5.2128 47 1 3.6642 -1.9327 7.9185 48 1 3.2061 -1.3640 6.2851 49 1 2.5684 0.6584 7.1746 50 1 3.0297 0.0814 8.8053 51 1 -0.9288 -0.1419 7.2152 52 1 0.2424 1.1496 6.8403 53 1 -0.1921 -5.3206 8.0242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029499103.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:15 Heat of formation + Delta-G solvation = -78.364210 kcal Electronic energy + Delta-G solvation = -31209.191556 eV Core-core repulsion = 27273.287221 eV Total energy + Delta-G solvation = -3935.904334 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.62998 -40.42539 -39.29145 -37.25827 -35.40664 -34.27635 -33.49619 -32.38367 -31.10684 -31.00043 -29.25149 -27.44718 -26.91445 -25.41143 -25.25829 -23.28276 -22.21727 -21.58529 -21.21936 -20.78567 -20.21202 -18.72677 -18.08100 -17.46631 -17.10714 -16.93914 -16.44844 -16.32108 -15.74060 -15.54115 -15.40764 -15.16944 -14.83932 -14.68866 -14.49391 -14.41377 -14.06337 -13.92192 -13.56821 -13.44769 -13.25934 -13.22936 -13.13518 -12.87533 -12.77230 -12.70731 -12.57519 -12.45689 -12.01696 -11.97132 -11.84840 -11.76321 -11.50585 -11.48553 -11.44605 -11.30974 -11.18506 -11.12789 -10.88705 -10.55196 -10.36537 -9.74144 -8.69820 -7.84958 -5.19083 1.50192 1.52148 1.58759 1.60481 1.80116 2.51553 2.84152 3.34628 3.47692 3.56580 3.76289 3.78927 4.00971 4.07431 4.10651 4.12491 4.18694 4.22011 4.25340 4.29539 4.30769 4.33904 4.43460 4.51159 4.53417 4.56107 4.58007 4.71970 4.77472 4.80434 4.91839 4.97267 4.99056 5.04192 5.06599 5.07412 5.12850 5.15405 5.19449 5.29876 5.30996 5.33923 5.35010 5.38658 5.42762 5.55268 5.55598 5.61326 5.82720 6.19501 6.24336 6.54613 7.09490 7.19524 7.72805 8.52331 9.26744 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018189 B = 0.002797 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.035439 B =10008.233649 C =10309.245934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 H 0.064 0.936 4 C -0.107 4.107 5 C -0.121 4.121 6 C -0.113 4.113 7 C -0.141 4.141 8 C 0.087 3.913 9 H 0.071 0.929 10 O -0.379 6.379 11 C 0.054 3.946 12 C 0.508 3.492 13 O -0.579 6.579 14 N -0.590 5.590 15 C 0.115 3.885 16 C 0.163 3.837 17 H 0.093 0.907 18 C -0.126 4.126 19 C -0.114 4.114 20 C 0.130 3.870 21 H 0.083 0.917 22 C 0.110 3.890 23 N -0.604 5.604 24 C -0.235 4.235 25 H 0.073 0.927 26 C -0.048 4.048 27 N -0.931 5.931 28 Si 0.969 3.031 29 H -0.289 1.289 30 H -0.277 1.277 31 H -0.297 1.297 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.051 0.949 46 H 0.090 0.910 47 H 0.059 0.941 48 H 0.068 0.932 49 H 0.060 0.940 50 H 0.066 0.934 51 H 0.043 0.957 52 H 0.079 0.921 53 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.825 3.573 -17.150 19.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 H 0.083 0.917 4 C -0.144 4.144 5 C -0.159 4.159 6 C -0.151 4.151 7 C -0.179 4.179 8 C 0.030 3.970 9 H 0.089 0.911 10 O -0.298 6.298 11 C -0.025 4.025 12 C 0.297 3.703 13 O -0.460 6.460 14 N -0.323 5.323 15 C -0.009 4.009 16 C 0.056 3.944 17 H 0.111 0.889 18 C -0.165 4.165 19 C -0.152 4.152 20 C 0.023 3.977 21 H 0.101 0.899 22 C -0.015 4.015 23 N -0.325 5.325 24 C -0.364 4.364 25 H 0.091 0.909 26 C -0.243 4.243 27 N -0.579 5.579 28 Si 0.798 3.202 29 H -0.217 1.217 30 H -0.203 1.203 31 H -0.223 1.223 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.115 0.885 44 H 0.108 0.892 45 H 0.069 0.931 46 H 0.108 0.892 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.079 0.921 50 H 0.085 0.915 51 H 0.061 0.939 52 H 0.097 0.903 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.567 4.158 -17.117 19.171 hybrid contribution -0.797 -0.814 1.121 1.598 sum 6.769 3.344 -15.996 17.688 Atomic orbital electron populations 1.21752 0.95038 1.01872 1.01483 1.21195 0.95934 0.99848 0.93428 0.91731 1.21574 0.95855 1.00877 0.96135 1.21581 0.95189 1.00952 0.98129 1.21491 1.00967 0.99392 0.93246 1.22039 0.94955 1.01484 0.99401 1.22436 0.93899 0.96187 0.84528 0.91140 1.88003 1.86883 1.35038 1.19908 1.22226 1.02165 0.92346 0.85773 1.20727 0.77733 0.87828 0.84036 1.90629 1.54876 1.16814 1.83642 1.48142 1.64010 1.09883 1.10227 1.22503 1.00884 0.77702 0.99827 1.21974 0.88380 0.97976 0.86115 0.88944 1.22442 0.97947 0.95931 1.00137 1.22277 0.95665 0.97205 1.00100 1.22130 0.94350 0.86480 0.94788 0.89879 1.22174 0.97286 0.95413 0.86623 1.45348 1.54583 1.00163 1.32434 1.19252 1.26603 0.92963 0.97595 0.90885 1.25418 1.01667 0.98281 0.98939 1.69950 1.53707 1.10422 1.23772 0.85236 0.77644 0.78176 0.79102 1.21652 1.20278 1.22336 0.94374 0.91526 0.92369 0.90427 0.91130 0.92185 0.90300 0.90826 0.91197 0.92209 0.91815 0.88546 0.89187 0.93096 0.89223 0.92219 0.91350 0.92095 0.91516 0.93855 0.90285 0.94108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.05 71.98 0.65 -2.27 16 2 C -0.09 -1.65 2.46 -10.79 -0.03 -1.67 16 3 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 4 C -0.11 -1.45 5.20 30.60 0.16 -1.29 16 5 C -0.12 -1.50 5.92 30.59 0.18 -1.32 16 6 C -0.11 -1.55 5.92 30.59 0.18 -1.37 16 7 C -0.14 -2.64 5.54 30.59 0.17 -2.47 16 8 C 0.09 1.86 2.04 30.59 0.06 1.93 16 9 H 0.07 1.36 7.79 -2.38 -0.02 1.34 16 10 O -0.38 -11.24 8.84 -129.94 -1.15 -12.39 16 11 C 0.05 1.54 4.61 71.24 0.33 1.87 16 12 C 0.51 18.67 7.78 87.66 0.68 19.35 16 13 O -0.58 -25.37 15.97 16.01 0.26 -25.11 16 14 N -0.59 -22.08 2.26 -813.97 -1.84 -23.92 16 15 C 0.11 4.37 5.73 86.76 0.50 4.86 16 16 C 0.16 6.82 3.17 45.68 0.14 6.96 16 17 H 0.09 4.44 6.35 -2.39 -0.02 4.42 16 18 C -0.13 -4.35 6.16 31.37 0.19 -4.15 16 19 C -0.11 -3.89 6.16 31.37 0.19 -3.70 16 20 C 0.13 5.11 4.31 45.43 0.20 5.31 16 21 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 22 C 0.11 4.31 5.89 86.52 0.51 4.82 16 23 N -0.60 -28.01 2.80 -635.68 -1.78 -29.79 16 24 C -0.24 -12.16 10.37 84.03 0.87 -11.29 16 25 H 0.07 3.72 7.85 -2.91 -0.02 3.70 16 26 C -0.05 -2.51 5.42 84.86 0.46 -2.05 16 27 N -0.93 -49.42 10.42 21.65 0.23 -49.20 16 28 Si 0.97 43.11 29.56 68.60 2.03 45.13 16 29 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 30 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 31 H -0.30 -13.37 7.11 99.48 0.71 -12.67 16 32 H 0.04 0.99 7.68 -2.39 -0.02 0.97 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 0.79 8.14 -2.38 -0.02 0.78 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.06 1.19 7.87 -2.39 -0.02 1.17 16 43 H 0.10 2.32 7.32 -2.39 -0.02 2.31 16 44 H 0.09 2.29 8.00 -2.39 -0.02 2.27 16 45 H 0.05 2.31 7.83 -2.39 -0.02 2.29 16 46 H 0.09 2.78 6.08 -2.39 -0.01 2.77 16 47 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.07 2.10 7.85 -2.39 -0.02 2.08 16 49 H 0.06 2.04 7.84 -2.39 -0.02 2.03 16 50 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 51 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 52 H 0.08 3.03 7.11 -2.39 -0.02 3.02 16 53 H 0.25 13.03 8.31 -92.71 -0.77 12.26 16 Total: -1.00 -62.48 398.77 4.06 -58.43 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.86 Total: 23.33 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 5.45 Total: 13.52 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -3.39 Total: -102.90 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -0.89 Total: -37.50 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -62.48 4.06 -58.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029499103.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.936 kcal (2) G-P(sol) polarization free energy of solvation -62.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds