Wall clock time and date at job start Tue Mar 31 2020 19:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47011 * 2 1 4 4 C 1.52998 * 109.46877 * 240.00171 * 2 1 3 5 5 C 1.52997 * 109.47260 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46835 * 59.99841 * 5 4 2 7 7 C 1.52998 * 109.47327 * 300.00118 * 6 5 4 8 8 C 1.52992 * 109.46876 * 120.00231 * 2 1 3 9 9 H 1.08998 * 109.47499 * 299.99815 * 8 2 1 10 10 O 1.42898 * 109.47639 * 59.99804 * 8 2 1 11 11 C 1.42896 * 114.00721 * 209.99871 * 10 8 2 12 12 C 1.50695 * 109.47496 * 179.97438 * 11 10 8 13 13 O 1.21279 * 120.00142 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00076 * 179.97438 * 12 11 10 15 15 C 1.47167 * 120.71102 * 180.02562 * 14 12 11 16 16 C 1.53882 * 108.03072 * 132.73324 * 15 14 12 17 17 H 1.09001 * 112.09533 * 182.54288 * 16 15 14 18 18 C 1.54546 * 107.83101 * 306.50514 * 16 15 14 19 19 C 1.54278 * 104.85182 * 89.07689 * 18 16 15 20 20 C 1.54543 * 104.84641 * 359.97438 * 19 18 16 21 21 H 1.09005 * 112.17718 * 146.41713 * 20 19 18 22 22 C 1.47168 * 120.71032 * 359.71847 * 14 12 11 23 23 N 1.48306 * 104.35861 * 24.70991 * 20 19 18 24 24 C 1.36937 * 128.07856 * 139.07665 * 23 20 19 25 25 H 1.08003 * 119.99870 * 194.96158 * 24 23 20 26 26 C 1.38810 * 120.00048 * 14.95735 * 24 23 20 27 27 N 1.31622 * 120.00066 * 9.27686 * 26 24 23 28 28 Si 1.86802 * 119.99962 * 189.27084 * 26 24 23 29 29 H 1.48500 * 109.46809 * 90.00251 * 28 26 24 30 30 H 1.48504 * 109.47069 * 210.00245 * 28 26 24 31 31 H 1.48496 * 109.47115 * 330.00346 * 28 26 24 32 32 H 1.09001 * 109.46624 * 300.00029 * 1 2 3 33 33 H 1.08999 * 109.47031 * 59.99614 * 1 2 3 34 34 H 1.08999 * 109.47425 * 180.02562 * 1 2 3 35 35 H 1.09009 * 109.47344 * 300.00292 * 4 2 1 36 36 H 1.09005 * 109.47351 * 59.99616 * 4 2 1 37 37 H 1.09001 * 109.47007 * 179.97438 * 5 4 2 38 38 H 1.08999 * 109.47086 * 300.00352 * 5 4 2 39 39 H 1.09004 * 109.46852 * 180.02562 * 6 5 4 40 40 H 1.08999 * 109.47386 * 60.00452 * 6 5 4 41 41 H 1.08999 * 109.47160 * 300.00472 * 7 6 5 42 42 H 1.08996 * 109.47340 * 180.02562 * 7 6 5 43 43 H 1.09007 * 109.46809 * 300.00309 * 11 10 8 44 44 H 1.09002 * 109.46963 * 59.99288 * 11 10 8 45 45 H 1.09002 * 109.74501 * 252.36455 * 15 14 12 46 46 H 1.08996 * 109.74617 * 13.09905 * 15 14 12 47 47 H 1.08999 * 110.36473 * 207.91812 * 18 16 15 48 48 H 1.08994 * 110.36361 * 330.12020 * 18 16 15 49 49 H 1.09000 * 110.37125 * 118.84082 * 19 18 16 50 50 H 1.09005 * 110.36178 * 241.04417 * 19 18 16 51 51 H 1.09005 * 109.74521 * 346.90272 * 22 14 12 52 52 H 1.08997 * 109.74688 * 107.63109 * 22 14 12 53 53 H 0.96994 * 119.99838 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0794 -1.4435 0.0002 7 6 3.5695 -0.7223 1.2495 8 6 2.0400 -0.7213 1.2492 9 1 1.6767 -0.2075 2.1392 10 8 1.5636 -2.0685 1.2492 11 6 1.3699 -2.6166 2.5546 12 6 0.8685 -4.0327 2.4356 13 8 0.6947 -4.5245 1.3407 14 7 0.6143 -4.7531 3.5459 15 6 0.1248 -6.1375 3.4479 16 6 0.9579 -7.0064 4.4065 17 1 0.6786 -8.0586 4.3537 18 6 2.4501 -6.7814 4.0730 19 6 2.8745 -5.5834 4.9476 20 6 1.6000 -5.1929 5.7296 21 1 1.8280 -4.8201 6.7283 22 6 0.8266 -4.1745 4.8823 23 7 0.7951 -6.4380 5.7664 24 6 0.0707 -6.9447 6.8122 25 1 -0.2696 -7.9694 6.7870 26 6 -0.2261 -6.1415 7.9047 27 7 0.0259 -4.8504 7.8601 28 14 -0.9833 -6.8930 9.4381 29 1 0.0959 -7.3240 10.3627 30 1 -1.8395 -5.8843 10.1126 31 1 -1.8081 -8.0678 9.0581 32 1 -0.3632 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.9332 -1.2360 -2.1388 38 1 3.9337 0.3057 -1.2487 39 1 5.1695 -1.4435 0.0006 40 1 3.7157 -2.4710 0.0000 41 1 3.9332 0.3053 1.2497 42 1 3.9328 -1.2361 2.1394 43 1 2.3162 -2.6100 3.0955 44 1 0.6381 -2.0166 3.0956 45 1 -0.9263 -6.1776 3.7338 46 1 0.2433 -6.4986 2.4263 47 1 3.0339 -7.6650 4.3311 48 1 2.5709 -6.5433 3.0163 49 1 3.6669 -5.8779 5.6358 50 1 3.2057 -4.7550 4.3213 51 1 1.4035 -3.2535 4.7974 52 1 -0.1354 -3.9655 5.3502 53 1 -0.1811 -4.2893 8.6236 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029499104.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:19 Heat of formation + Delta-G solvation = -75.968814 kcal Electronic energy + Delta-G solvation = -31560.866211 eV Core-core repulsion = 27625.065749 eV Total energy + Delta-G solvation = -3935.800462 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.63904 -40.49528 -39.26133 -36.87860 -35.39633 -34.25764 -33.46862 -32.40853 -31.12643 -31.03195 -29.32429 -27.44046 -26.90637 -25.41019 -25.24964 -23.39328 -22.26236 -21.52093 -21.22555 -20.51758 -20.23333 -18.70909 -17.77473 -17.52596 -17.20900 -16.74305 -16.49538 -16.24354 -16.05243 -15.56644 -15.36124 -15.10472 -14.70700 -14.65906 -14.45259 -14.41402 -14.01233 -13.88791 -13.56415 -13.45080 -13.27439 -13.26155 -13.00664 -12.88019 -12.72345 -12.57643 -12.50779 -12.41773 -12.39064 -11.98508 -11.83608 -11.73475 -11.48632 -11.45568 -11.39684 -11.33984 -11.13888 -10.88165 -10.82026 -10.54089 -10.34033 -9.73169 -8.70635 -7.85041 -5.19185 1.50169 1.52029 1.58679 1.62993 1.83432 2.51528 2.91705 3.34548 3.47947 3.59522 3.81963 3.84066 3.94126 4.09160 4.11040 4.14735 4.21456 4.23438 4.27061 4.29680 4.34338 4.43735 4.45356 4.54133 4.58127 4.63403 4.66357 4.71971 4.79838 4.80472 4.93987 4.97779 4.98162 5.03117 5.06478 5.08518 5.11095 5.14463 5.24776 5.30610 5.34358 5.34720 5.38247 5.44789 5.48006 5.55366 5.61475 5.65454 5.82770 6.24051 6.24671 6.56508 7.09391 7.21804 7.72663 8.52064 9.26641 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020408 B = 0.002924 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.683786 B = 9573.490626 C = 9871.585154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 H 0.103 0.897 4 C -0.111 4.111 5 C -0.114 4.114 6 C -0.116 4.116 7 C -0.139 4.139 8 C 0.082 3.918 9 H 0.073 0.927 10 O -0.369 6.369 11 C 0.053 3.947 12 C 0.509 3.491 13 O -0.578 6.578 14 N -0.591 5.591 15 C 0.110 3.890 16 C 0.130 3.870 17 H 0.083 0.917 18 C -0.114 4.114 19 C -0.126 4.126 20 C 0.163 3.837 21 H 0.092 0.908 22 C 0.116 3.884 23 N -0.604 5.604 24 C -0.235 4.235 25 H 0.073 0.927 26 C -0.048 4.048 27 N -0.931 5.931 28 Si 0.969 3.031 29 H -0.289 1.289 30 H -0.296 1.296 31 H -0.277 1.277 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.040 0.960 41 H 0.092 0.908 42 H 0.062 0.938 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.042 0.958 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.060 0.940 49 H 0.059 0.941 50 H 0.068 0.932 51 H 0.090 0.910 52 H 0.050 0.950 53 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.865 11.701 -12.606 18.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.100 4.100 3 H 0.121 0.879 4 C -0.149 4.149 5 C -0.151 4.151 6 C -0.153 4.153 7 C -0.176 4.176 8 C 0.025 3.975 9 H 0.091 0.909 10 O -0.288 6.288 11 C -0.027 4.027 12 C 0.298 3.702 13 O -0.459 6.459 14 N -0.324 5.324 15 C -0.015 4.015 16 C 0.023 3.977 17 H 0.101 0.899 18 C -0.153 4.153 19 C -0.165 4.165 20 C 0.056 3.944 21 H 0.110 0.890 22 C -0.008 4.008 23 N -0.325 5.325 24 C -0.364 4.364 25 H 0.091 0.909 26 C -0.243 4.243 27 N -0.579 5.579 28 Si 0.798 3.202 29 H -0.216 1.216 30 H -0.223 1.223 31 H -0.203 1.203 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.111 0.889 42 H 0.080 0.920 43 H 0.113 0.887 44 H 0.107 0.893 45 H 0.061 0.939 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.086 0.914 51 H 0.109 0.891 52 H 0.068 0.932 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.608 11.377 -13.100 18.946 hybrid contribution -0.839 -0.569 1.331 1.673 sum 6.769 10.809 -11.769 17.354 Atomic orbital electron populations 1.21764 0.95287 1.01148 1.02058 1.21257 0.95736 0.99391 0.93640 0.87911 1.21493 0.95989 1.00032 0.97338 1.21501 0.95059 1.01100 0.97450 1.21406 1.00041 0.99030 0.94851 1.22025 0.94908 1.02235 0.98444 1.22433 0.94015 0.81956 0.99130 0.90890 1.88032 1.86779 1.29020 1.24943 1.22214 1.02001 0.91160 0.87275 1.20743 0.77656 0.88392 0.83456 1.90629 1.54789 1.72876 1.27571 1.48143 1.64083 1.13843 1.06308 1.22180 0.97251 0.82031 1.00050 1.22117 0.94352 0.96228 0.85048 0.89907 1.22378 0.95711 0.98537 0.98671 1.22558 0.97978 0.97869 0.98124 1.21743 0.88473 0.86844 0.97346 0.88989 1.22272 1.00869 0.96824 0.80807 1.45330 1.54906 1.24692 1.07600 1.19253 1.26642 0.94943 0.95576 0.90884 1.25418 1.01687 0.95776 1.01440 1.69950 1.53764 1.03648 1.30521 0.85234 0.77645 0.77138 0.80136 1.21645 1.22321 1.20274 0.92334 0.91686 0.94506 0.94077 0.91300 0.92221 0.90467 0.91381 0.94089 0.88943 0.91953 0.88742 0.89301 0.93915 0.90329 0.91571 0.92137 0.92266 0.91371 0.89139 0.93160 0.94103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.05 71.98 0.65 -2.18 16 2 C -0.08 -1.46 2.55 -10.79 -0.03 -1.49 16 3 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 4 C -0.11 -2.17 5.06 30.59 0.15 -2.02 16 5 C -0.11 -1.92 5.92 30.59 0.18 -1.74 16 6 C -0.12 -2.23 5.78 30.59 0.18 -2.06 16 7 C -0.14 -2.39 5.62 30.58 0.17 -2.22 16 8 C 0.08 1.64 2.35 30.58 0.07 1.71 16 9 H 0.07 1.27 7.79 -2.39 -0.02 1.25 16 10 O -0.37 -10.39 7.49 -129.94 -0.97 -11.37 16 11 C 0.05 1.47 4.61 71.23 0.33 1.80 16 12 C 0.51 18.49 7.78 87.66 0.68 19.18 16 13 O -0.58 -25.08 15.97 16.01 0.26 -24.82 16 14 N -0.59 -22.06 2.26 -815.93 -1.85 -23.91 16 15 C 0.11 4.31 5.90 86.55 0.51 4.82 16 16 C 0.13 5.13 4.32 45.47 0.20 5.33 16 17 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 18 C -0.11 -3.93 6.18 31.55 0.20 -3.73 16 19 C -0.13 -4.38 6.18 31.55 0.20 -4.19 16 20 C 0.16 6.84 3.11 45.30 0.14 6.98 16 21 H 0.09 4.42 6.36 -2.38 -0.02 4.41 16 22 C 0.12 4.41 5.67 86.39 0.49 4.90 16 23 N -0.60 -28.09 2.81 -637.63 -1.79 -29.88 16 24 C -0.24 -12.19 10.37 84.03 0.87 -11.32 16 25 H 0.07 3.73 7.85 -2.91 -0.02 3.71 16 26 C -0.05 -2.52 5.42 84.86 0.46 -2.06 16 27 N -0.93 -49.49 10.42 21.65 0.23 -49.27 16 28 Si 0.97 43.15 29.56 68.60 2.03 45.18 16 29 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 30 H -0.30 -13.37 7.11 99.48 0.71 -12.67 16 31 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 34 H 0.04 0.93 7.68 -2.39 -0.02 0.92 16 35 H 0.04 1.09 7.68 -2.38 -0.02 1.07 16 36 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.04 1.05 7.68 -2.39 -0.02 1.03 16 41 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 1.10 7.87 -2.39 -0.02 1.08 16 43 H 0.09 2.24 7.30 -2.38 -0.02 2.22 16 44 H 0.09 2.21 8.01 -2.39 -0.02 2.19 16 45 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.08 3.02 7.11 -2.39 -0.02 3.01 16 47 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.06 2.04 7.84 -2.39 -0.02 2.02 16 49 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.07 2.09 7.83 -2.38 -0.02 2.07 16 51 H 0.09 2.80 6.09 -2.38 -0.01 2.78 16 52 H 0.05 2.28 7.82 -2.39 -0.02 2.26 16 53 H 0.25 13.04 8.31 -92.71 -0.77 12.27 16 Total: -1.00 -62.61 396.63 4.21 -58.40 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.86 Total: 23.94 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 5.45 Total: 11.73 kcal Atomic # 7 Polarization: -99.64 SS G_CDS: -3.41 Total: -103.05 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -0.72 Total: -36.19 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -62.61 4.21 -58.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029499104.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.569 kcal (2) G-P(sol) polarization free energy of solvation -62.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds