Wall clock time and date at job start Tue Mar 31 2020 21:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.49148 * 2 1 4 4 O 1.42912 * 109.53807 * 119.99767 * 2 1 3 5 5 C 1.42912 * 114.15393 * 181.07140 * 4 2 1 6 6 C 1.53093 * 109.41353 * 298.87756 * 5 4 2 7 7 C 1.53175 * 109.16417 * 57.60648 * 6 5 4 8 8 C 1.53096 * 109.48048 * 239.97113 * 2 1 3 9 9 H 1.09004 * 109.51693 * 302.37485 * 8 2 1 10 10 C 1.50696 * 109.52240 * 62.49919 * 8 2 1 11 11 O 1.21275 * 120.00132 * 21.21782 * 10 8 2 12 12 N 1.34773 * 119.99879 * 201.21009 * 10 8 2 13 13 C 1.46934 * 120.56649 * 3.49094 * 12 10 8 14 14 C 1.53309 * 108.70342 * 125.73779 * 13 12 10 15 15 C 1.52270 * 109.42165 * 53.51722 * 14 13 12 16 16 C 1.54523 * 110.20229 * 177.79848 * 15 14 13 17 17 C 1.55023 * 101.53271 * 276.41154 * 16 15 14 18 18 N 1.47476 * 104.90422 * 323.62414 * 17 16 15 19 19 C 1.36932 * 125.66258 * 204.03793 * 18 17 16 20 20 H 1.08004 * 120.00394 * 150.96670 * 19 18 17 21 21 C 1.38816 * 120.00024 * 330.96824 * 19 18 17 22 22 N 1.31618 * 120.00205 * 161.39690 * 21 19 18 23 23 Si 1.86796 * 119.99794 * 341.39367 * 21 19 18 24 24 H 1.48505 * 109.47265 * 84.69687 * 23 21 19 25 25 H 1.48504 * 109.47423 * 204.69862 * 23 21 19 26 26 H 1.48499 * 109.47168 * 324.69927 * 23 21 19 27 27 C 1.47179 * 108.67563 * 24.01281 * 18 17 16 28 28 C 1.52268 * 111.27219 * 300.36219 * 15 14 13 29 29 C 1.46937 * 120.56220 * 183.46628 * 12 10 8 30 30 H 1.09003 * 109.47319 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46618 * 300.03105 * 1 2 3 32 32 H 1.08999 * 109.47103 * 60.02996 * 1 2 3 33 33 H 1.08997 * 109.47941 * 178.89215 * 5 4 2 34 34 H 1.09005 * 109.47720 * 58.85688 * 5 4 2 35 35 H 1.09000 * 109.51821 * 297.69858 * 6 5 4 36 36 H 1.08997 * 109.57115 * 177.54596 * 6 5 4 37 37 H 1.09003 * 109.53982 * 183.15006 * 7 6 5 38 38 H 1.09000 * 109.61653 * 62.93027 * 7 6 5 39 39 H 1.08997 * 109.59703 * 5.96443 * 13 12 10 40 40 H 1.09010 * 109.59749 * 245.49797 * 13 12 10 41 41 H 1.09001 * 109.48109 * 293.53077 * 14 13 12 42 42 H 1.09003 * 109.49003 * 173.50843 * 14 13 12 43 43 H 1.09007 * 111.00888 * 158.35480 * 16 15 14 44 44 H 1.08997 * 111.04492 * 34.49464 * 16 15 14 45 45 H 1.08999 * 110.35176 * 204.76486 * 17 16 15 46 46 H 1.09006 * 110.35010 * 82.47748 * 17 16 15 47 47 H 0.96996 * 120.00035 * 180.02562 * 22 21 19 48 48 H 1.09007 * 109.90537 * 117.86541 * 27 18 17 49 49 H 1.08997 * 109.91213 * 239.12096 * 27 18 17 50 50 H 1.08998 * 109.48115 * 179.61846 * 28 15 14 51 51 H 1.08999 * 109.48012 * 299.65381 * 28 15 14 52 52 H 1.09000 * 109.59774 * 354.02370 * 29 12 10 53 53 H 1.08994 * 109.59683 * 114.34398 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 8 2.0079 -0.6734 1.1664 5 6 3.4322 -0.7098 1.2783 6 6 4.0177 -1.4615 0.0800 7 6 3.5710 -0.7723 -1.2130 8 6 2.0405 -0.7223 -1.2496 9 1 1.6433 -1.7372 -1.2714 10 6 1.5902 0.0214 -2.4805 11 8 1.2766 1.1903 -2.4019 12 7 1.5360 -0.6125 -3.6686 13 6 1.8395 -2.0469 -3.7648 14 6 0.6620 -2.7540 -4.4458 15 6 0.3567 -2.0676 -5.7703 16 6 -0.7925 -2.8003 -6.4986 17 6 -0.0282 -3.9468 -7.2089 18 7 1.2585 -3.3508 -7.6142 19 6 2.0553 -3.7912 -8.6371 20 1 2.6882 -3.0946 -9.1669 21 6 2.0495 -5.1329 -8.9931 22 7 2.5067 -5.5033 -10.1704 23 14 1.3931 -6.4126 -7.8012 24 1 -0.0822 -6.5092 -7.9416 25 1 2.0064 -7.7310 -8.1030 26 1 1.7330 -6.0151 -6.4114 27 6 1.5436 -2.2038 -6.7371 28 6 -0.0014 -0.6022 -5.5635 29 6 1.1718 0.1191 -4.8898 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5143 0.8898 32 1 -0.3633 0.5134 -0.8902 33 1 3.7115 -1.2207 2.1997 34 1 3.8216 0.3082 1.2944 35 1 3.6604 -2.4913 0.0861 36 1 5.1059 -1.4532 0.1400 37 1 3.9381 -1.3348 -2.0715 38 1 3.9698 0.2417 -1.2438 39 1 1.9845 -2.4577 -2.7656 40 1 2.7438 -2.1904 -4.3564 41 1 -0.2147 -2.7041 -3.8000 42 1 0.9203 -3.7972 -4.6280 43 1 -1.2763 -2.1453 -7.2233 44 1 -1.5175 -3.1957 -5.7872 45 1 -0.5816 -4.2858 -8.0846 46 1 0.1380 -4.7753 -6.5202 47 1 2.5024 -6.4408 -10.4193 48 1 2.4605 -2.3846 -6.1760 49 1 1.6431 -1.2966 -7.3330 50 1 -0.2073 -0.1386 -6.5283 51 1 -0.8850 -0.5299 -4.9293 52 1 0.8764 1.1362 -4.6322 53 1 2.0249 0.1466 -5.5676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035180913.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:06 Heat of formation + Delta-G solvation = -85.117226 kcal Electronic energy + Delta-G solvation = -31572.857443 eV Core-core repulsion = 27636.660276 eV Total energy + Delta-G solvation = -3936.197167 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.00876 -40.73862 -39.42195 -37.29721 -35.13015 -34.63120 -33.72231 -33.05063 -32.14417 -30.72276 -29.09964 -28.14432 -26.55668 -25.55074 -24.49271 -23.83898 -23.17106 -22.50148 -21.75089 -20.56772 -19.19176 -18.95806 -18.23583 -17.39206 -17.19455 -16.95940 -16.65461 -16.45635 -16.19146 -15.80392 -15.56854 -15.26208 -15.07541 -14.97776 -14.71164 -14.33653 -14.15360 -13.99188 -13.86643 -13.63311 -13.53753 -13.39203 -13.17916 -13.15121 -12.98588 -12.83063 -12.67833 -12.39984 -12.25463 -12.22733 -12.09589 -12.01960 -11.91042 -11.67034 -11.52439 -11.35203 -11.27057 -11.12709 -10.77163 -10.72179 -10.41789 -9.64581 -8.88837 -8.20163 -5.54088 1.31588 1.37953 1.48763 1.53627 1.91597 2.41461 2.78368 3.05784 3.35682 3.41891 3.54798 3.58783 3.68383 3.74055 3.82686 3.91436 4.03392 4.09426 4.13589 4.18925 4.30880 4.33742 4.35600 4.41828 4.44654 4.56748 4.58259 4.60086 4.66381 4.73441 4.77062 4.80055 4.82989 4.84985 4.89553 4.93000 5.00716 5.02308 5.05701 5.07455 5.07824 5.21549 5.22703 5.23949 5.28346 5.35953 5.38262 5.58545 5.77788 6.11879 6.23037 6.37224 6.80104 7.10090 7.53526 8.15615 9.00720 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017602 B = 0.003126 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.329688 B = 8954.592665 C = 9573.921122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.109 3.891 3 H 0.054 0.946 4 O -0.390 6.390 5 C 0.051 3.949 6 C -0.148 4.148 7 C -0.113 4.113 8 C -0.134 4.134 9 H 0.115 0.885 10 C 0.526 3.474 11 O -0.576 6.576 12 N -0.600 5.600 13 C 0.104 3.896 14 C -0.115 4.115 15 C -0.062 4.062 16 C -0.110 4.110 17 C 0.107 3.893 18 N -0.625 5.625 19 C -0.237 4.237 20 H 0.047 0.953 21 C -0.032 4.032 22 N -0.959 5.959 23 Si 0.952 3.048 24 H -0.272 1.272 25 H -0.309 1.309 26 H -0.260 1.260 27 C 0.142 3.858 28 C -0.103 4.103 29 C 0.111 3.889 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.031 0.969 46 H 0.023 0.977 47 H 0.263 0.737 48 H 0.031 0.969 49 H 0.025 0.975 50 H 0.079 0.921 51 H 0.079 0.921 52 H 0.087 0.913 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.670 9.186 24.436 26.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.051 3.949 3 H 0.072 0.928 4 O -0.310 6.310 5 C -0.025 4.025 6 C -0.186 4.186 7 C -0.151 4.151 8 C -0.156 4.156 9 H 0.133 0.867 10 C 0.315 3.685 11 O -0.456 6.456 12 N -0.332 5.332 13 C -0.018 4.018 14 C -0.153 4.153 15 C -0.062 4.062 16 C -0.148 4.148 17 C -0.017 4.017 18 N -0.352 5.352 19 C -0.366 4.366 20 H 0.065 0.935 21 C -0.227 4.227 22 N -0.605 5.605 23 Si 0.780 3.220 24 H -0.198 1.198 25 H -0.237 1.237 26 H -0.184 1.184 27 C 0.018 3.982 28 C -0.142 4.142 29 C -0.011 4.011 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.127 0.873 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.115 0.885 45 H 0.050 0.950 46 H 0.041 0.959 47 H 0.072 0.928 48 H 0.049 0.951 49 H 0.043 0.957 50 H 0.098 0.902 51 H 0.098 0.902 52 H 0.105 0.895 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.863 9.585 24.439 26.407 hybrid contribution 0.348 -0.780 -0.830 1.191 sum -2.515 8.805 23.609 25.323 Atomic orbital electron populations 1.21776 0.92536 1.03005 1.02791 1.21739 0.95540 0.94348 0.83316 0.92772 1.87933 1.22544 1.78124 1.42354 1.22819 0.79919 1.00268 0.99509 1.22174 1.02486 1.00440 0.93463 1.21584 0.91503 1.01949 1.00041 1.22036 0.99018 1.01789 0.92732 0.86741 1.20678 0.76372 0.86780 0.84642 1.90658 1.50886 1.18117 1.85963 1.48151 1.67432 1.10390 1.07262 1.21999 0.98062 0.78919 1.02783 1.21758 0.99220 0.99183 0.95117 1.20964 0.94777 0.95886 0.94596 1.22732 0.96542 0.96407 0.99164 1.22056 0.86866 0.96089 0.96704 1.44868 1.19709 1.34769 1.35875 1.18485 1.19731 0.91801 1.06594 0.93486 1.25926 0.99705 0.98968 0.98089 1.69946 1.52630 1.17081 1.20878 0.85788 0.78038 0.77683 0.80495 1.19838 1.23701 1.18448 1.21595 0.96311 0.89560 0.90780 1.21687 0.98028 0.93071 1.01383 1.21630 0.97766 0.96448 0.85273 0.91314 0.91333 0.91538 0.86888 0.92956 0.90194 0.88610 0.90096 0.91934 0.87282 0.91181 0.89477 0.91368 0.90709 0.88539 0.95044 0.95918 0.92817 0.95118 0.95696 0.90217 0.90227 0.89504 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.31 71.98 0.67 -2.02 16 2 C 0.11 2.11 2.41 30.63 0.07 2.19 16 3 H 0.05 1.21 7.81 -2.39 -0.02 1.19 16 4 O -0.39 -7.29 10.41 -148.98 -1.55 -8.84 16 5 C 0.05 0.66 6.85 72.01 0.49 1.16 16 6 C -0.15 -1.70 6.14 30.68 0.19 -1.51 16 7 C -0.11 -1.70 5.19 30.71 0.16 -1.55 16 8 C -0.13 -2.39 1.37 -11.45 -0.02 -2.40 16 9 H 0.11 1.76 6.31 -2.38 -0.02 1.75 16 10 C 0.53 11.98 6.15 87.66 0.54 12.52 16 11 O -0.58 -16.76 14.32 -3.01 -0.04 -16.80 16 12 N -0.60 -12.97 2.96 -818.40 -2.42 -15.40 16 13 C 0.10 2.07 5.55 86.40 0.48 2.55 16 14 C -0.11 -2.57 4.78 30.46 0.15 -2.42 16 15 C -0.06 -1.63 0.53 -51.91 -0.03 -1.66 16 16 C -0.11 -3.14 5.99 31.80 0.19 -2.95 16 17 C 0.11 4.28 4.49 86.89 0.39 4.67 16 18 N -0.63 -28.96 3.07 -692.46 -2.13 -31.08 16 19 C -0.24 -13.57 10.54 84.04 0.89 -12.69 16 20 H 0.05 2.98 8.06 -2.91 -0.02 2.95 16 21 C -0.03 -1.87 5.45 84.86 0.46 -1.41 16 22 N -0.96 -60.59 13.97 21.65 0.30 -60.28 16 23 Si 0.95 46.07 24.42 68.60 1.68 47.75 16 24 H -0.27 -12.50 6.88 99.48 0.68 -11.81 16 25 H -0.31 -15.14 7.11 99.48 0.71 -14.44 16 26 H -0.26 -11.75 6.83 99.48 0.68 -11.08 16 27 C 0.14 5.12 5.44 86.48 0.47 5.59 16 28 C -0.10 -2.29 4.70 30.46 0.14 -2.15 16 29 C 0.11 2.55 6.16 86.40 0.53 3.08 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.42 6.53 -2.39 -0.02 1.40 16 33 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 1.16 7.59 -2.39 -0.02 1.14 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.11 1.63 5.29 -2.39 -0.01 1.62 16 40 H 0.07 1.56 6.53 -2.38 -0.02 1.54 16 41 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.07 1.76 7.49 -2.39 -0.02 1.74 16 43 H 0.07 2.09 8.01 -2.38 -0.02 2.07 16 44 H 0.10 2.19 8.01 -2.39 -0.02 2.17 16 45 H 0.03 1.38 7.61 -2.39 -0.02 1.36 16 46 H 0.02 0.92 4.98 -2.38 -0.01 0.91 16 47 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 48 H 0.03 1.12 6.07 -2.38 -0.01 1.11 16 49 H 0.02 0.93 7.59 -2.39 -0.02 0.91 16 50 H 0.08 1.78 8.10 -2.39 -0.02 1.76 16 51 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 52 H 0.09 2.09 6.99 -2.39 -0.02 2.07 16 53 H 0.07 1.59 7.48 -2.39 -0.02 1.57 16 Total: -1.00 -71.37 383.03 2.45 -68.92 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.83 Total: 14.75 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 5.78 Total: 0.99 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -4.25 Total: -106.76 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -1.59 Total: -25.64 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.68 Total: 47.75 kcal Total: -71.37 2.45 -68.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035180913.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.198 kcal (2) G-P(sol) polarization free energy of solvation -71.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds