Wall clock time and date at job start Tue Mar 31 2020 21:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.48011 * 2 1 4 4 O 1.42909 * 109.47681 * 239.97018 * 2 1 3 5 5 C 1.42909 * 114.14969 * 178.89402 * 4 2 1 6 6 C 1.53097 * 109.41436 * 61.05865 * 5 4 2 7 7 C 1.53178 * 109.21081 * 302.48951 * 6 5 4 8 8 C 1.53091 * 109.48099 * 120.02792 * 2 1 3 9 9 H 1.09002 * 109.51717 * 297.49276 * 8 2 1 10 10 C 1.50701 * 109.57633 * 57.64936 * 8 2 1 11 11 O 1.21284 * 119.99559 * 24.63849 * 10 8 2 12 12 N 1.34769 * 120.00226 * 204.63662 * 10 8 2 13 13 C 1.46936 * 120.55285 * 4.54103 * 12 10 8 14 14 C 1.52865 * 108.94586 * 234.29713 * 13 12 10 15 15 C 1.52114 * 109.51675 * 306.94657 * 14 13 12 16 16 C 1.54391 * 110.51165 * 295.74542 * 15 14 13 17 17 C 1.54463 * 102.87207 * 276.66359 * 16 15 14 18 18 N 1.47080 * 107.29550 * 338.49916 * 17 16 15 19 19 C 1.36939 * 125.62635 * 179.01211 * 18 17 16 20 20 H 1.07995 * 120.00044 * 179.97438 * 19 18 17 21 21 C 1.38813 * 119.99932 * 359.97290 * 19 18 17 22 22 N 1.31625 * 120.00014 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00196 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47020 * 90.00196 * 23 21 19 25 25 H 1.48495 * 109.47214 * 210.00489 * 23 21 19 26 26 H 1.48501 * 109.46941 * 330.00450 * 23 21 19 27 27 C 1.47574 * 108.74848 * 359.01035 * 18 17 16 28 28 C 1.52101 * 111.60378 * 59.14933 * 15 14 13 29 29 C 1.46927 * 120.55596 * 184.81157 * 12 10 8 30 30 H 1.08993 * 109.47277 * 299.97671 * 1 2 3 31 31 H 1.09006 * 109.47094 * 59.97779 * 1 2 3 32 32 H 1.08998 * 109.47307 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.42892 * 301.10501 * 5 4 2 34 34 H 1.09006 * 109.53702 * 181.06881 * 5 4 2 35 35 H 1.08999 * 109.52112 * 182.55449 * 6 5 4 36 36 H 1.08998 * 109.52565 * 62.42139 * 6 5 4 37 37 H 1.09001 * 109.54290 * 176.81618 * 7 6 5 38 38 H 1.09003 * 109.54566 * 296.98883 * 7 6 5 39 39 H 1.08997 * 109.60110 * 354.10449 * 13 12 10 40 40 H 1.08999 * 109.59982 * 114.57952 * 13 12 10 41 41 H 1.08998 * 109.55179 * 186.86354 * 14 13 12 42 42 H 1.08994 * 109.32939 * 66.89158 * 14 13 12 43 43 H 1.09002 * 110.73332 * 35.00990 * 16 15 14 44 44 H 1.09003 * 110.73084 * 158.31750 * 16 15 14 45 45 H 1.09001 * 109.87689 * 97.92588 * 17 16 15 46 46 H 1.09007 * 109.87568 * 218.92544 * 17 16 15 47 47 H 0.96998 * 119.99513 * 179.97438 * 22 21 19 48 48 H 1.09000 * 110.37619 * 264.49788 * 27 18 17 49 49 H 1.08995 * 110.37322 * 142.13991 * 27 18 17 50 50 H 1.09001 * 109.47661 * 180.71273 * 28 15 14 51 51 H 1.09005 * 109.47551 * 60.70746 * 28 15 14 52 52 H 1.08993 * 109.60717 * 245.41578 * 29 12 10 53 53 H 1.09002 * 109.60289 * 5.73480 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 8 2.0065 -0.6743 -1.1665 5 6 3.4306 -0.7108 -1.2799 6 6 4.0176 -1.4602 -0.0809 7 6 3.5710 -0.7709 1.2121 8 6 2.0405 -0.7222 1.2496 9 1 1.7149 -0.1842 2.1398 10 6 1.4927 -2.1258 1.2808 11 8 1.1596 -2.6698 0.2492 12 7 1.3728 -2.7764 2.4549 13 6 1.6785 -2.0957 3.7207 14 6 2.7083 -2.9211 4.4920 15 6 2.2138 -4.3532 4.6270 16 6 0.9263 -4.4030 5.4776 17 6 1.4692 -4.4084 6.9237 18 7 2.8604 -4.8822 6.8666 19 6 3.7029 -5.0136 7.9382 20 1 4.7110 -5.3721 7.7917 21 6 3.2612 -4.6858 9.2127 22 7 2.0323 -4.2493 9.3913 23 14 4.4101 -4.8657 10.6745 24 1 5.1562 -3.5977 10.8766 25 1 3.6177 -5.1733 11.8921 26 1 5.3700 -5.9690 10.4168 27 6 3.1986 -5.1927 5.4641 28 6 1.9800 -4.9954 3.2682 29 6 0.9400 -4.1801 2.4903 30 1 -0.3633 0.5134 0.8901 31 1 -0.3633 0.5142 -0.8898 32 1 -0.3634 -1.0276 -0.0005 33 1 3.8191 0.3075 -1.2979 34 1 3.7099 -1.2229 -2.2008 35 1 5.1058 -1.4499 -0.1421 36 1 3.6622 -2.4906 -0.0857 37 1 3.9391 -1.3326 2.0706 38 1 3.9703 0.2430 1.2415 39 1 2.0858 -1.1059 3.5145 40 1 0.7694 -2.0030 4.3148 41 1 2.8519 -2.4912 5.4833 42 1 3.6550 -2.9129 3.9518 43 1 0.3117 -3.5205 5.2995 44 1 0.3637 -5.3140 5.2732 45 1 1.4378 -3.3996 7.3351 46 1 0.8719 -5.0793 7.5413 47 1 1.7236 -4.0206 10.2819 48 1 3.0558 -6.2549 5.2655 49 1 4.2260 -4.9000 5.2478 50 1 1.6152 -6.0134 3.4052 51 1 2.9163 -5.0169 2.7104 52 1 -0.0273 -4.2521 2.9873 53 1 0.8579 -4.5632 1.4731 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035180915.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:10 Heat of formation + Delta-G solvation = -77.815540 kcal Electronic energy + Delta-G solvation = -31804.517574 eV Core-core repulsion = 27868.637032 eV Total energy + Delta-G solvation = -3935.880542 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.99126 -40.65326 -38.98980 -37.08135 -35.02156 -34.46174 -33.71102 -32.49291 -32.00034 -30.43082 -29.06899 -28.15652 -26.18996 -25.43804 -24.37966 -24.05692 -23.08807 -22.25581 -21.82700 -20.31458 -19.17353 -18.36617 -18.06004 -17.35158 -16.80288 -16.70175 -16.61372 -16.31342 -16.28948 -15.69692 -15.44270 -15.16445 -14.88597 -14.76662 -14.53390 -14.24725 -13.89844 -13.85852 -13.71676 -13.49814 -13.39107 -13.13013 -13.01101 -12.94415 -12.90573 -12.73578 -12.58741 -12.27615 -12.20360 -12.06802 -12.00703 -11.95172 -11.76888 -11.62755 -11.45741 -11.31499 -11.21018 -11.05087 -10.66988 -10.50192 -10.21528 -9.51448 -8.84277 -7.82325 -5.16588 1.46415 1.47626 1.56172 1.73562 2.06875 2.50896 2.95062 3.35597 3.46828 3.62422 3.70375 3.74299 3.77233 3.83844 3.95032 4.01810 4.05992 4.17463 4.25084 4.34303 4.38460 4.40088 4.42474 4.51201 4.61307 4.64309 4.70730 4.72967 4.76048 4.78243 4.83184 4.85203 4.86340 4.90182 4.96051 4.98386 5.05552 5.10171 5.14342 5.17189 5.21207 5.28259 5.33728 5.42816 5.47286 5.49038 5.67479 5.73376 5.84162 6.23118 6.46289 6.52011 7.14213 7.32185 7.81750 8.46653 9.27635 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022281 B = 0.002824 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.375266 B = 9913.951588 C =10179.701898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.103 3.897 3 H 0.088 0.912 4 O -0.388 6.388 5 C 0.060 3.940 6 C -0.156 4.156 7 C -0.110 4.110 8 C -0.143 4.143 9 H 0.122 0.878 10 C 0.521 3.479 11 O -0.559 6.559 12 N -0.608 5.608 13 C 0.111 3.889 14 C -0.104 4.104 15 C -0.056 4.056 16 C -0.120 4.120 17 C 0.190 3.810 18 N -0.623 5.623 19 C -0.239 4.239 20 H 0.078 0.922 21 C -0.064 4.064 22 N -0.949 5.949 23 Si 0.974 3.026 24 H -0.284 1.284 25 H -0.296 1.296 26 H -0.272 1.272 27 C 0.141 3.859 28 C -0.104 4.104 29 C 0.119 3.881 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.014 0.986 46 H -0.003 1.003 47 H 0.245 0.755 48 H 0.017 0.983 49 H 0.037 0.963 50 H 0.079 0.921 51 H 0.063 0.937 52 H 0.073 0.927 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.285 10.918 -19.223 22.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.045 3.955 3 H 0.106 0.894 4 O -0.307 6.307 5 C -0.017 4.017 6 C -0.194 4.194 7 C -0.147 4.147 8 C -0.164 4.164 9 H 0.140 0.860 10 C 0.311 3.689 11 O -0.437 6.437 12 N -0.342 5.342 13 C -0.011 4.011 14 C -0.142 4.142 15 C -0.057 4.057 16 C -0.159 4.159 17 C 0.065 3.935 18 N -0.349 5.349 19 C -0.368 4.368 20 H 0.096 0.904 21 C -0.257 4.257 22 N -0.598 5.598 23 Si 0.803 3.197 24 H -0.211 1.211 25 H -0.223 1.223 26 H -0.197 1.197 27 C 0.016 3.984 28 C -0.143 4.143 29 C -0.004 4.004 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.032 0.968 46 H 0.015 0.985 47 H 0.055 0.945 48 H 0.034 0.966 49 H 0.055 0.945 50 H 0.098 0.902 51 H 0.081 0.919 52 H 0.091 0.909 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.022 10.556 -19.695 22.345 hybrid contribution 0.638 -0.597 1.678 1.892 sum 0.617 9.959 -18.017 20.596 Atomic orbital electron populations 1.21867 0.93301 1.02368 1.03238 1.22011 0.95272 0.94775 0.83471 0.89430 1.88026 1.21612 1.78410 1.42672 1.22632 0.80730 1.00111 0.98219 1.22165 1.01859 0.99535 0.95828 1.21586 0.91608 1.03276 0.98265 1.22221 0.98428 0.93422 1.02356 0.85983 1.20791 0.77112 0.88622 0.82410 1.90699 1.50284 1.69337 1.33341 1.48229 1.66892 1.12592 1.06468 1.21837 0.99066 0.96466 0.83716 1.21443 0.98516 0.94192 1.00089 1.20918 0.95218 0.95635 0.93933 1.22783 0.96641 1.01715 0.94712 1.20872 0.84072 0.96170 0.92350 1.44781 1.10769 1.76991 1.02385 1.19414 0.94360 1.36818 0.86251 0.90408 1.25571 0.98198 1.02039 0.99911 1.70188 1.17084 1.51627 1.20933 0.85143 0.77815 0.77883 0.78886 1.21116 1.22290 1.19734 1.21663 0.96815 0.95940 0.83976 1.21616 0.99460 0.99186 0.94036 1.21507 0.97261 0.80649 1.00948 0.89390 0.91511 0.93669 0.91315 0.89171 0.89144 0.93888 0.90966 0.87976 0.87372 0.90666 0.92045 0.91563 0.90100 0.91720 0.96797 0.98494 0.94536 0.96551 0.94482 0.90227 0.91851 0.90915 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.24 71.98 0.67 -2.13 16 2 C 0.10 1.86 2.85 30.62 0.09 1.95 16 3 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 4 O -0.39 -9.18 9.01 -129.56 -1.17 -10.35 16 5 C 0.06 1.04 6.85 72.01 0.49 1.54 16 6 C -0.16 -2.76 5.82 30.69 0.18 -2.58 16 7 C -0.11 -1.66 5.39 30.71 0.17 -1.50 16 8 C -0.14 -2.50 1.75 -11.45 -0.02 -2.52 16 9 H 0.12 1.57 6.27 -2.39 -0.01 1.56 16 10 C 0.52 12.76 5.11 87.66 0.45 13.21 16 11 O -0.56 -17.85 12.80 16.38 0.21 -17.64 16 12 N -0.61 -14.15 2.97 -819.24 -2.43 -16.58 16 13 C 0.11 2.36 5.94 86.25 0.51 2.87 16 14 C -0.10 -2.86 4.84 30.26 0.15 -2.71 16 15 C -0.06 -1.72 0.55 -51.92 -0.03 -1.75 16 16 C -0.12 -4.11 4.92 31.56 0.16 -3.96 16 17 C 0.19 9.10 5.00 86.77 0.43 9.53 16 18 N -0.62 -31.20 3.39 -692.73 -2.35 -33.55 16 19 C -0.24 -13.26 10.28 84.03 0.86 -12.40 16 20 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 21 C -0.06 -3.62 5.49 84.86 0.47 -3.15 16 22 N -0.95 -56.38 10.31 21.65 0.22 -56.16 16 23 Si 0.97 45.40 29.55 68.60 2.03 47.43 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 27 C 0.14 5.57 6.15 86.56 0.53 6.10 16 28 C -0.10 -2.68 4.84 30.41 0.15 -2.53 16 29 C 0.12 2.91 6.15 86.41 0.53 3.44 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.04 1.12 6.26 -2.39 -0.01 1.10 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 34 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.04 1.05 7.05 -2.39 -0.02 1.03 16 37 H 0.07 1.17 8.03 -2.39 -0.02 1.15 16 38 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.11 1.72 5.27 -2.39 -0.01 1.71 16 40 H 0.08 1.61 6.56 -2.39 -0.02 1.60 16 41 H 0.06 2.06 7.82 -2.39 -0.02 2.04 16 42 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.08 2.43 6.19 -2.39 -0.01 2.41 16 44 H 0.06 2.11 7.98 -2.39 -0.02 2.09 16 45 H 0.01 0.74 7.38 -2.39 -0.02 0.72 16 46 H 0.00 -0.18 7.50 -2.38 -0.02 -0.19 16 47 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 48 H 0.02 0.66 7.99 -2.39 -0.02 0.64 16 49 H 0.04 1.44 8.02 -2.39 -0.02 1.42 16 50 H 0.08 1.98 8.09 -2.39 -0.02 1.96 16 51 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 52 H 0.07 1.70 7.62 -2.39 -0.02 1.68 16 53 H 0.08 2.12 7.02 -2.39 -0.02 2.10 16 Total: -1.00 -71.54 384.95 3.17 -68.36 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.88 Total: 15.05 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 5.78 Total: 3.42 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -4.55 Total: -106.28 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.96 Total: -27.98 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -71.54 3.17 -68.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035180915.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.451 kcal (2) G-P(sol) polarization free energy of solvation -71.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds