Wall clock time and date at job start Tue Mar 31 2020 21:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.49299 * 2 1 4 4 O 1.42908 * 109.48241 * 120.03107 * 2 1 3 5 5 C 1.42895 * 114.10145 * 181.13525 * 4 2 1 6 6 C 1.53096 * 109.41640 * 298.84564 * 5 4 2 7 7 C 1.53178 * 109.16355 * 57.60483 * 6 5 4 8 8 C 1.53090 * 109.47672 * 239.96818 * 2 1 3 9 9 H 1.09004 * 109.57501 * 62.47868 * 8 2 1 10 10 C 1.50705 * 109.52819 * 302.31734 * 8 2 1 11 11 O 1.21277 * 119.99334 * 335.84539 * 10 8 2 12 12 N 1.34774 * 120.00335 * 155.84471 * 10 8 2 13 13 C 1.46933 * 120.55587 * 175.37043 * 12 10 8 14 14 C 1.53337 * 108.68514 * 125.66499 * 13 12 10 15 15 C 1.52108 * 109.44775 * 53.30255 * 14 13 12 16 16 C 1.54613 * 110.43872 * 177.24880 * 15 14 13 17 17 C 1.54465 * 102.76389 * 276.54305 * 16 15 14 18 18 N 1.47081 * 107.42408 * 338.66018 * 17 16 15 19 19 C 1.36934 * 125.62899 * 178.94984 * 18 17 16 20 20 H 1.07999 * 119.99858 * 179.97438 * 19 18 17 21 21 C 1.38810 * 120.00045 * 359.97438 * 19 18 17 22 22 N 1.31620 * 120.00176 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99855 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47179 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46992 * 120.00030 * 23 21 19 26 26 H 1.48491 * 109.46959 * 239.99846 * 23 21 19 27 27 C 1.47569 * 108.73839 * 358.92769 * 18 17 16 28 28 C 1.52099 * 111.60157 * 300.70239 * 15 14 13 29 29 C 1.46934 * 120.55435 * 355.38919 * 12 10 8 30 30 H 1.08992 * 109.47539 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46882 * 300.03243 * 1 2 3 32 32 H 1.08998 * 109.46924 * 60.02535 * 1 2 3 33 33 H 1.08996 * 109.48271 * 178.85373 * 5 4 2 34 34 H 1.09005 * 109.48827 * 58.82580 * 5 4 2 35 35 H 1.09003 * 109.51862 * 297.69822 * 6 5 4 36 36 H 1.08993 * 109.52132 * 177.51306 * 6 5 4 37 37 H 1.09002 * 109.54283 * 183.15577 * 7 6 5 38 38 H 1.08993 * 109.54580 * 62.88916 * 7 6 5 39 39 H 1.08996 * 109.59879 * 5.90862 * 13 12 10 40 40 H 1.08998 * 109.60273 * 245.42857 * 13 12 10 41 41 H 1.08997 * 109.47666 * 293.31160 * 14 13 12 42 42 H 1.09003 * 109.47525 * 173.29437 * 14 13 12 43 43 H 1.08994 * 110.71002 * 158.26432 * 16 15 14 44 44 H 1.08998 * 110.86076 * 34.88595 * 16 15 14 45 45 H 1.08995 * 109.87675 * 219.15968 * 17 16 15 46 46 H 1.09000 * 109.87879 * 98.16053 * 17 16 15 47 47 H 0.96991 * 119.99921 * 180.02562 * 22 21 19 48 48 H 1.09000 * 110.37792 * 142.15424 * 27 18 17 49 49 H 1.08999 * 110.37660 * 264.50282 * 27 18 17 50 50 H 1.09008 * 109.47227 * 179.27819 * 28 15 14 51 51 H 1.08996 * 109.47822 * 299.29553 * 28 15 14 52 52 H 1.09008 * 109.60097 * 354.09674 * 29 12 10 53 53 H 1.09002 * 109.59771 * 114.40581 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 8 2.0066 -0.6743 1.1664 5 6 3.4307 -0.7095 1.2790 6 6 4.0175 -1.4603 0.0808 7 6 3.5710 -0.7710 -1.2122 8 6 2.0404 -0.7223 -1.2495 9 1 1.7148 -0.1853 -2.1405 10 6 1.4925 -2.1259 -1.2791 11 8 1.1519 -2.6657 -0.2479 12 7 1.3810 -2.7813 -2.4515 13 6 0.9444 -4.1839 -2.4847 14 6 -0.2572 -4.3021 -3.4298 15 6 0.0997 -3.7007 -4.7806 16 6 -1.0731 -3.8695 -5.7737 17 6 -0.8630 -5.3029 -6.3095 18 7 0.5462 -5.6565 -6.0804 19 6 1.1297 -6.8543 -6.3968 20 1 2.1767 -7.0167 -6.1879 21 6 0.3754 -7.8595 -6.9861 22 7 -0.9008 -7.6617 -7.2403 23 14 1.1716 -9.4932 -7.4184 24 1 2.6053 -9.4624 -7.0331 25 1 0.4859 -10.5874 -6.6850 26 1 1.0562 -9.7286 -8.8799 27 6 1.2275 -4.5072 -5.4539 28 6 0.4885 -2.2355 -4.6560 29 6 1.6945 -2.1053 -3.7179 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5144 0.8897 32 1 -0.3633 0.5134 -0.8902 33 1 3.7099 -1.2204 2.2004 34 1 3.8195 0.3087 1.2958 35 1 3.6612 -2.4904 0.0863 36 1 5.1057 -1.4500 0.1420 37 1 3.9390 -1.3328 -2.0708 38 1 3.9689 0.2433 -1.2409 39 1 0.6541 -4.5002 -1.4829 40 1 1.7582 -4.8117 -2.8475 41 1 -1.1067 -3.7661 -3.0065 42 1 -0.5174 -5.3529 -3.5572 43 1 -1.0020 -3.1413 -6.5816 44 1 -2.0312 -3.7859 -5.2607 45 1 -1.0848 -5.3361 -7.3761 46 1 -1.5110 -5.9973 -5.7746 47 1 -1.4279 -8.3643 -7.6517 48 1 1.9449 -4.8514 -4.7088 49 1 1.7264 -3.9027 -6.2113 50 1 0.7492 -1.8438 -5.6393 51 1 -0.3503 -1.6701 -4.2502 52 1 1.8987 -1.0513 -3.5290 53 1 2.5680 -2.5708 -4.1744 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035180916.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:14 Heat of formation + Delta-G solvation = -78.236518 kcal Electronic energy + Delta-G solvation = -31763.328251 eV Core-core repulsion = 27827.429454 eV Total energy + Delta-G solvation = -3935.898797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.96344 -40.64635 -38.97264 -37.05408 -35.01754 -34.48881 -33.69944 -32.40515 -32.09717 -30.63187 -28.88695 -27.71811 -26.51325 -25.62776 -24.40382 -23.88900 -23.12009 -22.30868 -21.75517 -20.23679 -18.95156 -18.75769 -17.99726 -17.32667 -16.83798 -16.78774 -16.56242 -16.28047 -16.19753 -15.68772 -15.56533 -15.11321 -14.94312 -14.71561 -14.39889 -14.18460 -13.91578 -13.82977 -13.70345 -13.55616 -13.33488 -13.11254 -13.00010 -12.93967 -12.89482 -12.80820 -12.58786 -12.41589 -12.17508 -12.09746 -11.98556 -11.98062 -11.73437 -11.63109 -11.40757 -11.31610 -11.19512 -11.05246 -10.69261 -10.46524 -10.20598 -9.50234 -8.84968 -7.83715 -5.17712 1.44070 1.44893 1.54849 1.76362 2.05877 2.49472 2.97112 3.34540 3.48349 3.60489 3.72415 3.75727 3.81394 3.89197 3.92248 4.03913 4.07444 4.15020 4.24476 4.31253 4.39573 4.41437 4.45408 4.50270 4.62502 4.67737 4.69284 4.74194 4.76609 4.77940 4.80873 4.84171 4.86015 4.95516 4.97161 5.05558 5.07405 5.11160 5.12795 5.17750 5.24913 5.29871 5.36045 5.38996 5.46061 5.49828 5.67209 5.72061 5.81238 6.22191 6.48735 6.56398 7.12662 7.34406 7.81432 8.45972 9.26688 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021735 B = 0.002879 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.930166 B = 9724.599678 C =10218.063601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.102 3.898 3 H 0.093 0.907 4 O -0.392 6.392 5 C 0.059 3.941 6 C -0.159 4.159 7 C -0.108 4.108 8 C -0.139 4.139 9 H 0.132 0.868 10 C 0.517 3.483 11 O -0.565 6.565 12 N -0.608 5.608 13 C 0.123 3.877 14 C -0.100 4.100 15 C -0.059 4.059 16 C -0.122 4.122 17 C 0.188 3.812 18 N -0.624 5.624 19 C -0.235 4.235 20 H 0.080 0.920 21 C -0.068 4.068 22 N -0.952 5.952 23 Si 0.973 3.027 24 H -0.265 1.265 25 H -0.295 1.295 26 H -0.292 1.292 27 C 0.144 3.856 28 C -0.109 4.109 29 C 0.104 3.896 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.036 0.964 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.001 0.999 46 H 0.003 0.997 47 H 0.244 0.756 48 H 0.037 0.963 49 H 0.028 0.972 50 H 0.095 0.905 51 H 0.079 0.921 52 H 0.120 0.880 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.497 23.045 11.482 27.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.044 3.956 3 H 0.111 0.889 4 O -0.311 6.311 5 C -0.018 4.018 6 C -0.197 4.197 7 C -0.145 4.145 8 C -0.161 4.161 9 H 0.149 0.851 10 C 0.307 3.693 11 O -0.443 6.443 12 N -0.341 5.341 13 C 0.000 4.000 14 C -0.138 4.138 15 C -0.060 4.060 16 C -0.160 4.160 17 C 0.062 3.938 18 N -0.351 5.351 19 C -0.364 4.364 20 H 0.098 0.902 21 C -0.261 4.261 22 N -0.601 5.601 23 Si 0.802 3.198 24 H -0.190 1.190 25 H -0.223 1.223 26 H -0.219 1.219 27 C 0.019 3.981 28 C -0.148 4.148 29 C -0.018 4.018 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.126 0.874 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.019 0.981 46 H 0.021 0.979 47 H 0.054 0.946 48 H 0.055 0.945 49 H 0.046 0.954 50 H 0.113 0.887 51 H 0.098 0.902 52 H 0.138 0.862 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.164 22.484 12.082 26.798 hybrid contribution -0.022 -2.037 -0.715 2.159 sum 8.142 20.447 11.367 24.771 Atomic orbital electron populations 1.21880 0.93600 1.02135 1.03285 1.22042 0.95083 0.94947 0.83536 0.88947 1.88042 1.21674 1.78502 1.42889 1.22632 0.80729 1.00222 0.98197 1.22190 1.01950 0.99337 0.96203 1.21599 0.91332 1.03525 0.98075 1.22249 0.98570 0.92694 1.02539 0.85077 1.20993 0.77212 0.88760 0.82353 1.90708 1.50206 1.69676 1.33722 1.48247 1.66687 1.12014 1.07191 1.21350 0.96437 0.82651 0.99575 1.21465 0.97460 1.00356 0.94516 1.21009 0.95306 0.96003 0.93651 1.22781 0.98117 0.96644 0.98494 1.20867 0.85045 0.91786 0.96054 1.44800 1.06990 1.11839 1.71429 1.19462 0.94253 0.90185 1.32512 0.90188 1.25597 0.96554 1.01813 1.02123 1.70206 1.07075 1.33275 1.49572 0.85075 0.78027 0.79660 0.77011 1.18979 1.22271 1.21943 1.21744 0.94129 0.88071 0.94107 1.21727 0.98648 0.93449 1.00931 1.22077 0.97676 0.99271 0.82732 0.94154 0.91727 0.89038 0.89629 0.90945 0.94470 0.88915 0.90423 0.87364 0.91228 0.92341 0.91699 0.93576 0.90438 0.91050 0.98100 0.97888 0.94645 0.94490 0.95404 0.88693 0.90246 0.86193 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.24 71.98 0.67 -2.18 16 2 C 0.10 1.77 2.84 30.62 0.09 1.86 16 3 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 4 O -0.39 -9.38 9.01 -129.53 -1.17 -10.55 16 5 C 0.06 1.01 6.84 72.01 0.49 1.50 16 6 C -0.16 -2.67 5.83 30.69 0.18 -2.50 16 7 C -0.11 -1.35 5.52 30.71 0.17 -1.18 16 8 C -0.14 -2.20 1.82 -11.45 -0.02 -2.22 16 9 H 0.13 1.24 6.09 -2.38 -0.01 1.22 16 10 C 0.52 13.02 5.11 87.66 0.45 13.46 16 11 O -0.56 -19.46 12.77 16.43 0.21 -19.25 16 12 N -0.61 -14.81 2.96 -818.30 -2.42 -17.23 16 13 C 0.12 3.81 6.13 86.41 0.53 4.34 16 14 C -0.10 -3.28 4.83 30.41 0.15 -3.13 16 15 C -0.06 -1.80 0.54 -51.84 -0.03 -1.83 16 16 C -0.12 -4.28 5.91 31.64 0.19 -4.10 16 17 C 0.19 9.29 5.01 86.77 0.43 9.72 16 18 N -0.62 -31.67 3.39 -692.73 -2.35 -34.01 16 19 C -0.23 -13.21 10.28 84.03 0.86 -12.35 16 20 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 21 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 22 N -0.95 -58.30 10.31 21.65 0.22 -58.07 16 23 Si 0.97 46.58 29.55 68.60 2.03 48.61 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 25 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 26 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 27 C 0.14 5.50 5.23 86.56 0.45 5.95 16 28 C -0.11 -2.22 4.84 30.41 0.15 -2.08 16 29 C 0.10 1.83 6.00 86.41 0.52 2.35 16 30 H 0.04 1.06 6.24 -2.39 -0.01 1.04 16 31 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.04 0.92 7.06 -2.39 -0.02 0.90 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 38 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 2.39 6.99 -2.39 -0.02 2.38 16 40 H 0.06 1.93 6.58 -2.39 -0.02 1.92 16 41 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.05 1.87 7.84 -2.39 -0.02 1.85 16 43 H 0.08 2.41 8.00 -2.39 -0.02 2.40 16 44 H 0.07 2.33 8.01 -2.39 -0.02 2.31 16 45 H 0.00 0.04 7.50 -2.39 -0.02 0.02 16 46 H 0.00 0.16 7.37 -2.39 -0.02 0.14 16 47 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 48 H 0.04 1.42 6.19 -2.39 -0.01 1.40 16 49 H 0.03 1.02 7.97 -2.39 -0.02 1.00 16 50 H 0.09 1.66 8.10 -2.38 -0.02 1.64 16 51 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.12 1.20 5.37 -2.38 -0.01 1.19 16 53 H 0.07 1.32 7.65 -2.39 -0.02 1.30 16 Total: -1.00 -76.86 385.21 3.14 -73.72 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.88 Total: 12.63 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 5.74 Total: 4.15 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -4.54 Total: -109.32 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.96 Total: -29.80 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -76.86 3.14 -73.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035180916.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.520 kcal (2) G-P(sol) polarization free energy of solvation -76.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds