Wall clock time and date at job start Tue Mar 31 2020 21:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.49008 * 2 1 4 4 O 1.42905 * 109.47662 * 239.97102 * 2 1 3 5 5 C 1.42904 * 114.09697 * 178.85856 * 4 2 1 6 6 C 1.53092 * 109.41489 * 61.15841 * 5 4 2 7 7 C 1.53176 * 109.16341 * 302.39692 * 6 5 4 8 8 C 1.53089 * 109.48103 * 120.03268 * 2 1 3 9 9 H 1.08999 * 109.57199 * 57.65236 * 8 2 1 10 10 C 1.50702 * 109.52266 * 297.49448 * 8 2 1 11 11 O 1.21275 * 119.99773 * 351.30487 * 10 8 2 12 12 N 1.34775 * 119.99892 * 171.30485 * 10 8 2 13 13 C 1.46931 * 120.56170 * 177.10973 * 12 10 8 14 14 C 1.53316 * 108.70172 * 125.73523 * 13 12 10 15 15 C 1.52270 * 109.41867 * 53.52500 * 14 13 12 16 16 C 1.54510 * 110.21304 * 177.79300 * 15 14 13 17 17 C 1.55239 * 101.44051 * 206.60979 * 16 15 14 18 18 N 1.47481 * 104.79187 * 36.66539 * 17 16 15 19 19 C 1.36939 * 125.66260 * 155.93215 * 18 17 16 20 20 H 1.08000 * 119.99544 * 192.09016 * 19 18 17 21 21 C 1.38807 * 120.00371 * 12.08405 * 19 18 17 22 22 N 1.31614 * 120.00750 * 205.52993 * 21 19 18 23 23 Si 1.86806 * 119.99486 * 25.53475 * 21 19 18 24 24 H 1.48504 * 109.47262 * 269.99911 * 23 21 19 25 25 H 1.48504 * 109.47365 * 29.99608 * 23 21 19 26 26 H 1.48503 * 109.47035 * 149.99845 * 23 21 19 27 27 C 1.47172 * 108.67594 * 335.66379 * 18 17 16 28 28 C 1.52276 * 111.26869 * 300.35729 * 15 14 13 29 29 C 1.46928 * 120.56701 * 357.08259 * 12 10 8 30 30 H 1.09005 * 109.46827 * 299.97308 * 1 2 3 31 31 H 1.08997 * 109.47023 * 59.96849 * 1 2 3 32 32 H 1.08999 * 109.47232 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.48061 * 301.17987 * 5 4 2 34 34 H 1.08994 * 109.48156 * 181.14755 * 5 4 2 35 35 H 1.08993 * 109.52253 * 182.48647 * 6 5 4 36 36 H 1.09004 * 109.51909 * 62.30014 * 6 5 4 37 37 H 1.08998 * 109.54197 * 297.10519 * 7 6 5 38 38 H 1.09002 * 109.61629 * 176.88736 * 7 6 5 39 39 H 1.08996 * 109.60047 * 5.96740 * 13 12 10 40 40 H 1.09001 * 109.73023 * 245.57516 * 13 12 10 41 41 H 1.09003 * 109.47951 * 293.53758 * 14 13 12 42 42 H 1.09002 * 109.47849 * 173.51015 * 14 13 12 43 43 H 1.09001 * 111.01171 * 324.84002 * 16 15 14 44 44 H 1.08996 * 111.01619 * 88.67481 * 16 15 14 45 45 H 1.08999 * 110.48577 * 277.80573 * 17 16 15 46 46 H 1.09002 * 110.33256 * 155.44295 * 17 16 15 47 47 H 0.97004 * 119.99793 * 354.94162 * 22 21 19 48 48 H 1.09005 * 109.91116 * 121.10436 * 27 18 17 49 49 H 1.08999 * 109.90857 * 242.17727 * 27 18 17 50 50 H 1.09000 * 109.47771 * 179.61303 * 28 15 14 51 51 H 1.08996 * 109.48162 * 299.64907 * 28 15 14 52 52 H 1.08999 * 109.59672 * 354.02445 * 29 12 10 53 53 H 1.09000 * 109.59863 * 114.32988 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 8 2.0065 -0.6742 -1.1664 5 6 3.4307 -0.7094 -1.2792 6 6 4.0176 -1.4602 -0.0810 7 6 3.5711 -0.7710 1.2120 8 6 2.0406 -0.7223 1.2495 9 1 1.6443 -1.7375 1.2719 10 6 1.5903 0.0214 2.4804 11 8 1.0646 1.1090 2.3734 12 7 1.7719 -0.5222 3.7003 13 6 1.3956 0.2188 4.9119 14 6 0.4504 -0.6527 5.7474 15 6 1.0976 -2.0088 5.9940 16 6 0.1836 -2.8829 6.8817 17 6 1.2189 -3.8179 7.5627 18 7 2.3996 -2.9656 7.7963 19 6 3.3610 -3.1769 8.7484 20 1 4.0777 -2.4009 8.9734 21 6 3.4141 -4.3880 9.4244 22 7 3.9488 -4.4486 10.6255 23 14 2.7268 -5.9323 8.6291 24 1 1.2934 -6.0783 8.9885 25 1 2.8591 -5.8302 7.1535 26 1 3.4816 -7.1162 9.1130 27 6 2.3766 -1.8540 6.8321 28 6 1.3979 -2.7239 4.6836 29 6 2.3490 -1.8661 3.8410 30 1 -0.3633 0.5134 0.8903 31 1 -0.3633 0.5143 -0.8897 32 1 -0.3633 -1.0276 -0.0005 33 1 3.8193 0.3089 -1.2959 34 1 3.7099 -1.2202 -2.2006 35 1 5.1058 -1.4499 -0.1423 36 1 3.6613 -2.4903 -0.0866 37 1 3.9690 0.2433 1.2407 38 1 3.9392 -1.3315 2.0714 39 1 0.8898 1.1431 4.6330 40 1 2.2879 0.4513 5.4931 41 1 -0.4878 -0.7899 5.2099 42 1 0.2545 -0.1644 6.7020 43 1 -0.3432 -2.2756 7.6177 44 1 -0.5187 -3.4551 6.2755 45 1 1.4747 -4.6478 6.9040 46 1 0.8274 -4.1908 8.5092 47 1 4.3714 -3.6638 11.0084 48 1 2.3595 -0.9022 7.3631 49 1 3.2543 -1.9035 6.1876 50 1 1.8656 -3.6859 4.8934 51 1 0.4695 -2.8829 4.1351 52 1 2.4718 -2.3162 2.8560 53 1 3.3183 -1.7978 4.3351 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035180918.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:20 Heat of formation + Delta-G solvation = -85.043858 kcal Electronic energy + Delta-G solvation = -31567.140238 eV Core-core repulsion = 27630.946253 eV Total energy + Delta-G solvation = -3936.193985 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.04497 -40.74403 -39.42843 -37.35184 -35.25402 -34.67070 -33.65591 -32.99542 -32.13300 -30.68654 -29.10055 -28.05558 -26.43563 -25.44377 -24.55477 -23.73200 -23.11480 -22.53924 -21.73313 -20.64833 -19.52761 -19.16300 -18.31809 -17.37361 -17.06617 -16.80681 -16.71152 -16.44092 -16.17980 -15.76062 -15.56835 -15.42260 -15.15869 -15.07072 -14.71293 -14.42741 -14.25593 -13.98436 -13.86564 -13.56665 -13.51156 -13.20004 -13.18478 -13.00735 -12.94089 -12.85697 -12.64334 -12.39049 -12.23833 -12.11573 -11.99702 -11.93137 -11.65186 -11.57513 -11.47710 -11.34853 -11.23157 -11.02572 -10.72924 -10.62725 -10.41638 -9.65601 -9.10656 -8.61993 -5.41063 1.41412 1.52801 1.53836 1.70811 1.90265 2.54643 2.79494 3.06953 3.38673 3.42611 3.53769 3.58440 3.68708 3.71633 3.81480 3.91099 4.03574 4.08300 4.13201 4.17639 4.28621 4.33918 4.35720 4.42678 4.45425 4.55350 4.57232 4.58306 4.62970 4.73863 4.76974 4.78455 4.80760 4.85549 4.86789 4.93906 4.99551 5.01827 5.03425 5.07335 5.08062 5.19905 5.22858 5.28107 5.29355 5.33665 5.37325 5.57301 5.60209 6.13315 6.23458 6.36457 6.85642 7.09041 7.52388 8.17407 8.86476 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018713 B = 0.003039 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.957345 B = 9211.237080 C = 9798.417353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.111 3.889 3 H 0.052 0.948 4 O -0.390 6.390 5 C 0.050 3.950 6 C -0.148 4.148 7 C -0.118 4.118 8 C -0.132 4.132 9 H 0.117 0.883 10 C 0.524 3.476 11 O -0.574 6.574 12 N -0.600 5.600 13 C 0.112 3.888 14 C -0.104 4.104 15 C -0.060 4.060 16 C -0.111 4.111 17 C 0.097 3.903 18 N -0.628 5.628 19 C -0.316 4.316 20 H 0.037 0.963 21 C -0.079 4.079 22 N -0.959 5.959 23 Si 1.107 2.893 24 H -0.274 1.274 25 H -0.260 1.260 26 H -0.308 1.308 27 C 0.145 3.855 28 C -0.114 4.114 29 C 0.104 3.896 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.101 0.899 45 H 0.039 0.961 46 H 0.035 0.965 47 H 0.246 0.754 48 H 0.014 0.986 49 H 0.027 0.973 50 H 0.073 0.927 51 H 0.089 0.911 52 H 0.112 0.888 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.059 5.887 -25.517 26.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.052 3.948 3 H 0.070 0.930 4 O -0.310 6.310 5 C -0.026 4.026 6 C -0.186 4.186 7 C -0.156 4.156 8 C -0.153 4.153 9 H 0.135 0.865 10 C 0.314 3.686 11 O -0.454 6.454 12 N -0.332 5.332 13 C -0.010 4.010 14 C -0.143 4.143 15 C -0.061 4.061 16 C -0.149 4.149 17 C -0.027 4.027 18 N -0.356 5.356 19 C -0.444 4.444 20 H 0.055 0.945 21 C -0.272 4.272 22 N -0.603 5.603 23 Si 0.932 3.068 24 H -0.200 1.200 25 H -0.185 1.185 26 H -0.237 1.237 27 C 0.020 3.980 28 C -0.152 4.152 29 C -0.018 4.018 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.131 0.869 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.120 0.880 45 H 0.056 0.944 46 H 0.053 0.947 47 H 0.056 0.944 48 H 0.032 0.968 49 H 0.045 0.955 50 H 0.092 0.908 51 H 0.107 0.893 52 H 0.130 0.870 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.671 4.808 -25.402 26.700 hybrid contribution 1.211 2.033 1.078 2.601 sum -5.460 6.841 -24.324 25.851 Atomic orbital electron populations 1.21831 0.92563 1.02889 1.03021 1.21704 0.95593 0.94160 0.83307 0.93004 1.87942 1.22526 1.78058 1.42445 1.22818 0.79953 1.00234 0.99564 1.22178 1.02452 1.00522 0.93423 1.21707 0.91601 1.02037 1.00216 1.21984 0.98900 1.01835 0.92575 0.86497 1.20723 0.77492 0.85645 0.84761 1.90647 1.45171 1.22954 1.86645 1.48125 1.61863 1.17740 1.05502 1.21587 0.98792 0.95553 0.85086 1.21694 0.98525 0.93820 1.00236 1.20956 0.94320 0.95935 0.94894 1.22772 0.96296 0.97412 0.98388 1.22221 0.87821 0.94670 0.98019 1.44940 1.23889 1.28935 1.37826 1.19881 1.10870 0.99349 1.14348 0.94480 1.27144 1.01718 1.03055 0.95331 1.71031 1.42319 1.33543 1.13416 0.83324 0.75651 0.72140 0.75649 1.20031 1.18498 1.23682 1.21511 0.96356 0.90063 0.90086 1.21770 1.00841 0.98435 0.94174 1.22040 0.96488 0.81170 1.02076 0.90947 0.91626 0.91532 0.93058 0.86922 0.88674 0.90035 0.92030 0.89686 0.89504 0.91971 0.90038 0.90672 0.91217 0.88040 0.94356 0.94668 0.94440 0.96774 0.95464 0.90803 0.89274 0.87019 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.28 71.98 0.67 -2.12 16 2 C 0.11 2.14 2.39 30.63 0.07 2.21 16 3 H 0.05 1.15 7.93 -2.39 -0.02 1.13 16 4 O -0.39 -7.24 10.41 -148.98 -1.55 -8.79 16 5 C 0.05 0.65 6.84 72.01 0.49 1.14 16 6 C -0.15 -1.63 6.14 30.68 0.19 -1.45 16 7 C -0.12 -1.71 4.97 30.71 0.15 -1.55 16 8 C -0.13 -2.28 1.37 -11.45 -0.02 -2.29 16 9 H 0.12 1.73 7.08 -2.39 -0.02 1.72 16 10 C 0.52 11.79 6.54 87.66 0.57 12.37 16 11 O -0.57 -16.49 13.60 -3.02 -0.04 -16.53 16 12 N -0.60 -12.85 2.96 -818.42 -2.42 -15.27 16 13 C 0.11 2.62 6.16 86.40 0.53 3.15 16 14 C -0.10 -2.37 4.70 30.46 0.14 -2.23 16 15 C -0.06 -1.61 0.53 -51.91 -0.03 -1.63 16 16 C -0.11 -3.16 6.00 31.88 0.19 -2.97 16 17 C 0.10 3.84 4.39 86.96 0.38 4.22 16 18 N -0.63 -29.49 3.28 -692.02 -2.27 -31.76 16 19 C -0.32 -18.24 10.44 84.03 0.88 -17.36 16 20 H 0.04 2.35 8.06 -2.91 -0.02 2.32 16 21 C -0.08 -4.69 5.41 84.86 0.46 -4.23 16 22 N -0.96 -61.84 13.70 21.65 0.30 -61.55 16 23 Si 1.11 52.55 24.69 68.60 1.69 54.25 16 24 H -0.27 -12.03 6.60 99.48 0.66 -11.37 16 25 H -0.26 -11.00 6.27 99.48 0.62 -10.38 16 26 H -0.31 -14.99 7.11 99.48 0.71 -14.28 16 27 C 0.14 5.33 5.43 86.49 0.47 5.80 16 28 C -0.11 -2.46 4.78 30.46 0.15 -2.31 16 29 C 0.10 2.00 4.85 86.40 0.42 2.42 16 30 H 0.07 1.61 6.06 -2.38 -0.01 1.59 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.15 6.10 -2.39 -0.01 1.14 16 39 H 0.09 2.12 6.99 -2.39 -0.02 2.11 16 40 H 0.06 1.55 7.47 -2.39 -0.02 1.53 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.07 1.76 8.10 -2.39 -0.02 1.74 16 43 H 0.07 2.01 8.01 -2.39 -0.02 1.99 16 44 H 0.10 2.24 8.01 -2.39 -0.02 2.22 16 45 H 0.04 1.47 5.23 -2.39 -0.01 1.46 16 46 H 0.04 1.55 6.22 -2.39 -0.01 1.53 16 47 H 0.25 16.03 8.73 -92.71 -0.81 15.22 16 48 H 0.01 0.56 7.59 -2.38 -0.02 0.54 16 49 H 0.03 1.01 6.09 -2.39 -0.01 1.00 16 50 H 0.07 1.78 7.47 -2.39 -0.02 1.76 16 51 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 52 H 0.11 1.56 4.89 -2.39 -0.01 1.55 16 53 H 0.07 1.48 6.54 -2.39 -0.02 1.46 16 Total: -1.00 -73.02 378.69 2.15 -70.87 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.72 Total: 15.62 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 5.72 Total: -6.84 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -4.39 Total: -108.58 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -1.59 Total: -25.32 kcal Atomic # 14 Polarization: 52.55 SS G_CDS: 1.69 Total: 54.25 kcal Total: -73.02 2.15 -70.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035180918.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.176 kcal (2) G-P(sol) polarization free energy of solvation -73.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds