Wall clock time and date at job start Tue Mar 31 2020 20:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.41485 * 2 1 4 4 O 1.44416 * 110.37498 * 122.30795 * 2 1 3 5 5 C 1.44425 * 105.27419 * 159.34187 * 4 2 1 6 6 C 1.54475 * 104.80758 * 319.48882 * 5 4 2 7 7 C 1.54476 * 110.37150 * 237.69352 * 2 1 3 8 8 C 1.53001 * 110.62902 * 98.48425 * 7 2 1 9 9 C 1.50703 * 110.51208 * 335.83012 * 7 2 1 10 10 O 1.21279 * 119.99894 * 13.76179 * 9 7 2 11 11 N 1.34770 * 120.00110 * 193.75816 * 9 7 2 12 12 C 1.46936 * 120.55658 * 175.02943 * 11 9 7 13 13 C 1.53343 * 108.68799 * 125.61996 * 12 11 9 14 14 C 1.52109 * 109.44363 * 53.30682 * 13 12 11 15 15 C 1.54373 * 110.54489 * 177.21655 * 14 13 12 16 16 C 1.54466 * 102.87051 * 276.69148 * 15 14 13 17 17 N 1.47077 * 107.29643 * 338.49751 * 16 15 14 18 18 C 1.36936 * 125.62627 * 178.98299 * 17 16 15 19 19 H 1.08002 * 120.00392 * 180.02562 * 18 17 16 20 20 C 1.38819 * 120.00139 * 0.02562 * 18 17 16 21 21 N 1.31616 * 119.99736 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00120 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47017 * 90.00149 * 22 20 18 24 24 H 1.48499 * 109.47633 * 210.00055 * 22 20 18 25 25 H 1.48499 * 109.47423 * 330.00406 * 22 20 18 26 26 C 1.47560 * 108.74580 * 359.00182 * 17 16 15 27 27 C 1.52107 * 111.59987 * 300.70029 * 14 13 12 28 28 C 1.46937 * 120.55707 * 355.00479 * 11 9 7 29 29 H 1.09003 * 109.46757 * 197.39429 * 1 2 3 30 30 H 1.08998 * 109.47314 * 317.38730 * 1 2 3 31 31 H 1.08997 * 109.47656 * 77.39145 * 1 2 3 32 32 H 1.09007 * 110.37427 * 200.65821 * 5 4 2 33 33 H 1.09003 * 110.36864 * 78.32372 * 5 4 2 34 34 H 1.09000 * 110.51539 * 265.33605 * 6 5 4 35 35 H 1.08998 * 110.51342 * 142.61577 * 6 5 4 36 36 H 1.08996 * 109.47454 * 304.28893 * 8 7 2 37 37 H 1.09003 * 109.47047 * 64.29587 * 8 7 2 38 38 H 1.09005 * 109.47084 * 184.29582 * 8 7 2 39 39 H 1.09002 * 109.59781 * 5.85933 * 12 11 9 40 40 H 1.09008 * 109.60090 * 245.38177 * 12 11 9 41 41 H 1.08996 * 109.47675 * 293.31504 * 13 12 11 42 42 H 1.08996 * 109.47293 * 173.29285 * 13 12 11 43 43 H 1.08997 * 110.73423 * 158.34029 * 15 14 13 44 44 H 1.09001 * 110.73532 * 35.03333 * 15 14 13 45 45 H 1.08998 * 109.87399 * 219.07173 * 16 15 14 46 46 H 1.09002 * 109.87479 * 97.92648 * 16 15 14 47 47 H 0.97005 * 119.99819 * 179.97438 * 21 20 18 48 48 H 1.09001 * 110.37849 * 142.15545 * 26 17 16 49 49 H 1.08999 * 110.38089 * 264.39499 * 26 17 16 50 50 H 1.09002 * 109.47099 * 179.28275 * 27 14 13 51 51 H 1.08991 * 109.47810 * 299.29944 * 27 14 13 52 52 H 1.08998 * 109.59613 * 354.13375 * 28 11 9 53 53 H 1.08993 * 109.60097 * 114.61207 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 8 2.0328 -0.7236 1.1442 5 6 3.3874 -1.0870 0.7994 6 6 3.3178 -1.5056 -0.6860 7 6 2.0677 -0.7740 -1.2240 8 6 2.4534 0.1923 -2.3458 9 6 1.0444 -1.7666 -1.7124 10 8 -0.1017 -1.6980 -1.3215 11 7 1.4026 -2.7304 -2.5836 12 6 0.4439 -3.7693 -2.9841 13 6 0.3509 -3.7884 -4.5146 14 6 1.7457 -3.9293 -5.1049 15 6 1.6758 -4.0212 -6.6443 16 6 1.3748 -5.5168 -6.8863 17 7 1.7970 -6.2483 -5.6822 18 6 1.6814 -7.5988 -5.4878 19 1 2.0223 -8.0426 -4.5641 20 6 1.1259 -8.3976 -6.4780 21 7 0.7109 -7.8568 -7.6039 22 14 0.9688 -10.2400 -6.2131 23 1 -0.3422 -10.5395 -5.5831 24 1 1.0606 -10.9378 -7.5207 25 1 2.0631 -10.7075 -5.3248 26 6 2.3653 -5.2866 -4.7181 27 6 2.6522 -2.7846 -4.6788 28 6 2.7584 -2.7596 -3.1493 29 1 -0.3633 -0.9807 0.3072 30 1 -0.3634 0.7563 0.6957 31 1 -0.3634 0.2243 -1.0028 32 1 3.7243 -1.9222 1.4135 33 1 4.0525 -0.2322 0.9220 34 1 3.1956 -2.5852 -0.7733 35 1 4.2108 -1.1771 -1.2176 36 1 1.5974 0.8190 -2.5960 37 1 3.2801 0.8212 -2.0154 38 1 2.7576 -0.3751 -3.2255 39 1 -0.5355 -3.5457 -2.5610 40 1 0.7863 -4.7404 -2.6264 41 1 -0.0990 -2.8588 -4.8630 42 1 -0.2642 -4.6308 -4.8308 43 1 2.6299 -3.7422 -7.0913 44 1 0.8700 -3.3978 -7.0319 45 1 1.9347 -5.8722 -7.7513 46 1 0.3065 -5.6580 -7.0503 47 1 0.3231 -8.4151 -8.2960 48 1 2.0823 -5.5569 -3.7008 49 1 3.4506 -5.2509 -4.8125 50 1 3.6434 -2.9264 -5.1096 51 1 2.2351 -1.8407 -5.0296 52 1 3.3049 -1.8703 -2.8352 53 1 3.2794 -3.6526 -2.8043 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035213685.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:24 Heat of formation + Delta-G solvation = -47.870931 kcal Electronic energy + Delta-G solvation = -32037.082403 eV Core-core repulsion = 28102.500357 eV Total energy + Delta-G solvation = -3934.582046 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.38007 -40.73518 -39.16358 -37.35268 -35.29730 -34.58005 -32.65716 -32.20696 -31.77559 -30.60701 -29.12827 -27.82775 -26.69793 -25.56424 -24.64245 -24.11568 -22.95015 -22.57013 -21.72799 -20.61369 -19.03227 -18.77654 -17.79315 -17.14529 -16.98614 -16.81052 -16.47069 -16.33499 -16.01954 -15.78991 -15.62582 -15.18899 -15.01470 -14.62126 -14.48619 -14.34139 -14.18333 -13.84755 -13.59183 -13.39247 -13.30072 -13.12590 -12.95952 -12.87600 -12.79611 -12.71686 -12.57449 -12.31663 -12.15366 -12.14642 -12.04116 -12.00112 -11.79820 -11.71814 -11.54018 -11.40406 -11.17345 -11.00370 -10.71157 -10.68364 -9.95755 -9.54592 -8.84873 -7.83661 -5.17539 1.44303 1.45721 1.54071 1.61249 1.98127 2.49676 2.93845 3.33138 3.35245 3.42962 3.60900 3.70767 3.78690 3.88387 3.92557 4.00904 4.12567 4.14182 4.26944 4.30810 4.35103 4.47023 4.49233 4.50767 4.60965 4.67432 4.70132 4.73522 4.75523 4.77275 4.79293 4.89021 4.89780 4.97440 5.00335 5.03995 5.06208 5.07720 5.10807 5.12364 5.24749 5.26875 5.39378 5.43766 5.47717 5.55573 5.68200 5.72504 5.81356 5.95730 6.22189 6.48259 7.12816 7.22097 7.81654 8.45996 9.26500 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.002968 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.432580 B = 9430.598827 C = 9706.337556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.090 3.910 3 H 0.099 0.901 4 O -0.401 6.401 5 C 0.038 3.962 6 C -0.147 4.147 7 C -0.107 4.107 8 C -0.142 4.142 9 C 0.518 3.482 10 O -0.568 6.568 11 N -0.600 5.600 12 C 0.121 3.879 13 C -0.100 4.100 14 C -0.058 4.058 15 C -0.122 4.122 16 C 0.188 3.812 17 N -0.624 5.624 18 C -0.237 4.237 19 H 0.080 0.920 20 C -0.067 4.067 21 N -0.951 5.951 22 Si 0.973 3.027 23 H -0.289 1.289 24 H -0.295 1.295 25 H -0.268 1.268 26 C 0.144 3.856 27 C -0.110 4.110 28 C 0.094 3.906 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.126 0.874 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.047 0.953 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.001 0.999 46 H 0.003 0.997 47 H 0.244 0.756 48 H 0.036 0.964 49 H 0.028 0.972 50 H 0.096 0.904 51 H 0.081 0.919 52 H 0.126 0.874 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.557 20.822 12.020 25.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.032 3.968 3 H 0.117 0.883 4 O -0.321 6.321 5 C -0.038 4.038 6 C -0.185 4.185 7 C -0.110 4.110 8 C -0.199 4.199 9 C 0.308 3.692 10 O -0.447 6.447 11 N -0.333 5.333 12 C -0.002 4.002 13 C -0.138 4.138 14 C -0.060 4.060 15 C -0.160 4.160 16 C 0.063 3.937 17 N -0.351 5.351 18 C -0.366 4.366 19 H 0.097 0.903 20 C -0.260 4.260 21 N -0.601 5.601 22 Si 0.802 3.198 23 H -0.216 1.216 24 H -0.222 1.222 25 H -0.193 1.193 26 C 0.019 3.981 27 C -0.148 4.148 28 C -0.027 4.027 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.144 0.856 36 H 0.080 0.920 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.019 0.981 46 H 0.021 0.979 47 H 0.054 0.946 48 H 0.054 0.946 49 H 0.046 0.954 50 H 0.114 0.886 51 H 0.099 0.901 52 H 0.143 0.857 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.791 20.613 12.319 25.572 hybrid contribution -0.753 -1.889 -0.578 2.114 sum 8.037 18.724 11.741 23.517 Atomic orbital electron populations 1.21973 0.93383 1.01205 1.01302 1.23074 0.95463 0.95403 0.82823 0.88286 1.89169 1.28772 1.75113 1.39078 1.23637 0.83905 1.01260 0.94996 1.23355 0.97255 1.01044 0.96830 1.22156 0.94820 0.95621 0.98413 1.22064 1.03249 0.98267 0.96295 1.21047 0.89151 0.81336 0.77685 1.90785 1.22674 1.73546 1.57742 1.48212 1.13982 1.27311 1.43756 1.21420 0.93667 0.90381 0.94703 1.21468 0.96801 1.01137 0.94378 1.20962 0.95167 0.95066 0.94755 1.22740 1.01802 0.95901 0.95560 1.20873 0.95949 0.88623 0.88283 1.44789 1.71615 1.02873 1.15779 1.19422 1.33446 0.83008 1.00717 0.90261 1.25583 1.01714 1.02221 0.96450 1.70197 1.47897 1.34629 1.07330 0.85156 0.77898 0.80269 0.76507 1.21648 1.22179 1.19312 1.21746 0.95357 0.88536 0.92467 1.21753 1.00376 0.97467 0.95221 1.22393 0.82327 1.04621 0.93395 0.92489 0.94300 0.91484 0.88657 0.89497 0.90957 0.85594 0.92031 0.88070 0.89987 0.90818 0.92251 0.91451 0.93456 0.90421 0.90979 0.98088 0.97867 0.94632 0.94572 0.95446 0.88604 0.90068 0.85652 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.99 7.91 71.98 0.57 -2.42 16 2 C 0.09 1.73 3.39 31.10 0.11 1.84 16 3 H 0.10 1.39 7.87 -2.39 -0.02 1.37 16 4 O -0.40 -9.05 11.34 -148.98 -1.69 -10.74 16 5 C 0.04 0.52 7.63 72.48 0.55 1.08 16 6 C -0.15 -1.80 4.59 31.61 0.15 -1.65 16 7 C -0.11 -1.75 0.58 -51.91 -0.03 -1.78 16 8 C -0.14 -1.43 7.92 71.98 0.57 -0.86 16 9 C 0.52 12.89 6.26 87.66 0.55 13.43 16 10 O -0.57 -18.39 10.66 -3.03 -0.03 -18.43 16 11 N -0.60 -14.30 2.85 -818.28 -2.33 -16.63 16 12 C 0.12 3.64 6.13 86.41 0.53 4.17 16 13 C -0.10 -3.17 4.83 30.42 0.15 -3.02 16 14 C -0.06 -1.75 0.54 -51.92 -0.03 -1.78 16 15 C -0.12 -4.18 5.89 31.56 0.19 -3.99 16 16 C 0.19 9.18 5.01 86.77 0.43 9.62 16 17 N -0.62 -31.38 3.39 -692.74 -2.35 -33.72 16 18 C -0.24 -13.24 10.28 84.04 0.86 -12.38 16 19 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 20 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 21 N -0.95 -57.88 10.31 21.65 0.22 -57.66 16 22 Si 0.97 46.36 29.55 68.60 2.03 48.38 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 24 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 C 0.14 5.41 5.21 86.56 0.45 5.86 16 27 C -0.11 -2.16 4.75 30.41 0.14 -2.01 16 28 C 0.09 1.63 3.86 86.41 0.33 1.97 16 29 H 0.06 1.79 6.25 -3.08 -0.02 1.77 16 30 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 1.70 6.85 -2.39 -0.02 1.68 16 32 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 1.11 6.53 -2.39 -0.02 1.09 16 35 H 0.13 0.63 7.25 -2.39 -0.02 0.61 16 36 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.10 0.46 8.13 -2.39 -0.02 0.44 16 38 H 0.08 0.73 5.52 -2.38 -0.01 0.72 16 39 H 0.07 2.42 6.99 -2.39 -0.02 2.40 16 40 H 0.06 1.92 6.58 -2.38 -0.02 1.91 16 41 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.05 1.87 7.84 -2.39 -0.02 1.86 16 43 H 0.08 2.36 8.00 -2.39 -0.02 2.34 16 44 H 0.07 2.28 8.01 -2.39 -0.02 2.26 16 45 H 0.00 0.05 7.50 -2.39 -0.02 0.03 16 46 H 0.00 0.17 7.39 -2.39 -0.02 0.15 16 47 H 0.24 14.54 8.31 -92.70 -0.77 13.77 16 48 H 0.04 1.37 6.19 -2.39 -0.01 1.36 16 49 H 0.03 1.00 7.97 -2.39 -0.02 0.98 16 50 H 0.10 1.61 8.09 -2.39 -0.02 1.59 16 51 H 0.08 1.39 8.08 -2.39 -0.02 1.38 16 52 H 0.13 1.35 3.00 -2.39 -0.01 1.34 16 53 H 0.07 1.30 7.60 -2.39 -0.02 1.29 16 Total: -1.00 -74.59 378.17 2.73 -71.86 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.89 Total: 12.25 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 5.99 Total: 4.69 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -4.45 Total: -108.01 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -1.72 Total: -29.17 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -74.59 2.73 -71.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035213685.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.988 kcal (2) G-P(sol) polarization free energy of solvation -74.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds