Wall clock time and date at job start Tue Mar 31 2020 20:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.87562 * 2 1 4 4 O 1.43749 * 110.00710 * 238.91051 * 2 1 3 5 5 C 1.44377 * 106.97710 * 267.02194 * 4 2 1 6 6 C 1.55343 * 103.49955 * 319.90494 * 5 4 2 7 7 C 1.54103 * 109.87944 * 121.00635 * 2 1 3 8 8 C 1.52999 * 110.48997 * 236.35383 * 7 2 1 9 9 C 1.50696 * 110.48678 * 358.86942 * 7 2 1 10 10 O 1.21281 * 120.00052 * 114.27572 * 9 7 2 11 11 N 1.34779 * 120.00019 * 294.27656 * 9 7 2 12 12 C 1.46940 * 120.56472 * 179.48552 * 11 9 7 13 13 C 1.53311 * 108.69755 * 125.74133 * 12 11 9 14 14 C 1.52270 * 109.41461 * 53.52973 * 13 12 11 15 15 C 1.54535 * 110.15708 * 62.81662 * 14 13 12 16 16 C 1.55014 * 101.56388 * 153.26399 * 15 14 13 17 17 N 1.47531 * 104.87575 * 323.66570 * 16 15 14 18 18 C 1.36939 * 125.64107 * 203.98127 * 17 16 15 19 19 H 1.07996 * 120.00242 * 179.97438 * 18 17 16 20 20 C 1.38814 * 119.99751 * 359.97438 * 18 17 16 21 21 N 1.31612 * 120.00217 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99620 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47324 * 90.00061 * 22 20 18 24 24 H 1.48503 * 109.46967 * 209.99929 * 22 20 18 25 25 H 1.48500 * 109.46817 * 329.99465 * 22 20 18 26 26 C 1.47179 * 108.69820 * 23.95975 * 17 16 15 27 27 C 1.52276 * 111.26866 * 300.34421 * 14 13 12 28 28 C 1.46927 * 120.56100 * 359.46741 * 11 9 7 29 29 H 1.08993 * 109.47072 * 318.73641 * 1 2 3 30 30 H 1.09002 * 109.46622 * 78.73530 * 1 2 3 31 31 H 1.09003 * 109.46858 * 198.72926 * 1 2 3 32 32 H 1.08997 * 110.62008 * 78.43589 * 5 4 2 33 33 H 1.09000 * 110.61633 * 201.28079 * 5 4 2 34 34 H 1.09003 * 110.96426 * 278.91616 * 6 5 4 35 35 H 1.09001 * 111.00678 * 155.20925 * 6 5 4 36 36 H 1.09000 * 109.47207 * 212.26419 * 8 7 2 37 37 H 1.09003 * 109.47066 * 332.27012 * 8 7 2 38 38 H 1.09002 * 109.46934 * 92.26495 * 8 7 2 39 39 H 1.09009 * 109.59427 * 5.97897 * 12 11 9 40 40 H 1.08997 * 109.72780 * 245.58732 * 12 11 9 41 41 H 1.09004 * 109.48366 * 293.54108 * 13 12 11 42 42 H 1.08998 * 109.48069 * 173.51341 * 13 12 11 43 43 H 1.09003 * 111.00865 * 271.33843 * 15 14 13 44 44 H 1.08991 * 111.01823 * 35.17787 * 15 14 13 45 45 H 1.09003 * 110.35615 * 82.48512 * 16 15 14 46 46 H 1.08999 * 110.35713 * 204.77451 * 16 15 14 47 47 H 0.97001 * 119.99945 * 180.02562 * 21 20 18 48 48 H 1.08999 * 109.90693 * 239.17332 * 26 17 16 49 49 H 1.09005 * 110.06272 * 117.99480 * 26 17 16 50 50 H 1.09000 * 109.47976 * 179.62784 * 27 14 13 51 51 H 1.09003 * 109.48112 * 299.65690 * 27 14 13 52 52 H 1.09000 * 109.59454 * 354.01195 * 28 11 9 53 53 H 1.08992 * 109.60161 * 114.32628 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 8 2.0218 -0.6975 -1.1567 5 6 2.2335 -2.0703 -0.7629 6 6 2.8379 -1.9494 0.6630 7 6 2.0540 -0.7465 1.2421 8 6 2.9829 0.1557 2.0570 9 6 0.9061 -1.2254 2.0929 10 8 0.7060 -2.4139 2.2282 11 7 0.1017 -0.3329 2.7036 12 6 -1.0279 -0.7859 3.5269 13 6 -0.9094 -0.1496 4.9167 14 6 -0.7794 1.3606 4.7726 15 6 -2.0524 1.9448 4.1194 16 6 -2.0539 3.3901 4.6798 17 7 -1.5464 3.2620 6.0592 18 6 -1.7886 4.1384 7.0831 19 1 -1.3700 3.9548 8.0616 20 6 -2.5721 5.2630 6.8634 21 7 -3.0819 5.4872 5.6709 22 14 -2.9018 6.4590 8.2600 23 1 -1.8462 7.5033 8.2771 24 1 -4.2274 7.0983 8.0617 25 1 -2.8941 5.7260 9.5515 26 6 -0.7374 2.0360 6.1524 27 6 0.4491 1.7337 3.9538 28 6 0.3398 1.1096 2.5577 29 1 -0.3633 0.7724 0.6777 30 1 -0.3632 0.2008 -1.0079 31 1 -0.3633 -0.9733 0.3300 32 1 1.2879 -2.6117 -0.7347 33 1 2.9347 -2.5597 -1.4387 34 1 3.9051 -1.7324 0.6171 35 1 2.6506 -2.8520 1.2447 36 1 3.7513 -0.4514 2.5356 37 1 3.4540 0.8835 1.3963 38 1 2.4051 0.6780 2.8196 39 1 -1.0013 -1.8718 3.6184 40 1 -1.9663 -0.4809 3.0638 41 1 -0.0283 -0.5437 5.4231 42 1 -1.7995 -0.3838 5.5007 43 1 -1.9681 1.9471 3.0327 44 1 -2.9408 1.4005 4.4393 45 1 -1.3931 4.0259 4.0906 46 1 -3.0662 3.7942 4.6835 47 1 -3.6291 6.2732 5.5173 48 1 -1.1588 1.3696 6.9049 49 1 0.2914 2.2858 6.4122 50 1 0.5101 2.8182 3.8635 51 1 1.3443 1.3592 4.4503 52 1 1.2680 1.2734 2.0103 53 1 -0.4894 1.5640 2.0155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035213687.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:33 Heat of formation + Delta-G solvation = -46.487767 kcal Electronic energy + Delta-G solvation = -32217.715913 eV Core-core repulsion = 28283.193845 eV Total energy + Delta-G solvation = -3934.522068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.65118 -40.70559 -39.23887 -37.35533 -35.41288 -34.50352 -32.79091 -32.16168 -31.68732 -30.37399 -29.66580 -28.40082 -26.25623 -25.50117 -24.49356 -24.32813 -22.83409 -22.65833 -21.83810 -20.48005 -19.19601 -18.39839 -18.35406 -17.49294 -17.16865 -16.88771 -16.43385 -16.34171 -15.84933 -15.62726 -15.55534 -15.23504 -14.90280 -14.70005 -14.54883 -14.22776 -14.15997 -13.89331 -13.64445 -13.52764 -13.41405 -13.18455 -12.99630 -12.88760 -12.87545 -12.76965 -12.53990 -12.27412 -12.22120 -12.16368 -11.98959 -11.88411 -11.81800 -11.71384 -11.54705 -11.42942 -11.18620 -10.99058 -10.71294 -10.69019 -10.62998 -9.62151 -8.83308 -7.74812 -5.17704 1.47188 1.48027 1.53505 1.56713 1.92889 2.50858 2.88281 3.23772 3.34217 3.37227 3.65357 3.69904 3.73626 3.77648 3.84804 3.97234 4.09208 4.11276 4.19285 4.22427 4.24253 4.35038 4.47233 4.48496 4.58418 4.61618 4.66907 4.68404 4.71822 4.74985 4.79341 4.81830 4.86445 4.88099 4.98547 5.00218 5.01723 5.06073 5.06886 5.11122 5.21092 5.21934 5.26987 5.41253 5.45178 5.49501 5.61418 5.73486 5.84450 5.89041 6.35381 6.38140 7.09825 7.15067 7.83046 8.46760 9.26401 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026035 B = 0.002867 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.225624 B = 9765.504134 C =10017.382964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.087 3.913 3 H 0.124 0.876 4 O -0.382 6.382 5 C 0.044 3.956 6 C -0.134 4.134 7 C -0.112 4.112 8 C -0.158 4.158 9 C 0.535 3.465 10 O -0.579 6.579 11 N -0.598 5.598 12 C 0.118 3.882 13 C -0.105 4.105 14 C -0.055 4.055 15 C -0.120 4.120 16 C 0.159 3.841 17 N -0.625 5.625 18 C -0.237 4.237 19 H 0.075 0.925 20 C -0.065 4.065 21 N -0.946 5.946 22 Si 0.975 3.025 23 H -0.287 1.287 24 H -0.294 1.294 25 H -0.273 1.273 26 C 0.142 3.858 27 C -0.111 4.111 28 C 0.092 3.908 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.047 0.953 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.057 0.943 45 H -0.007 1.007 46 H 0.064 0.936 47 H 0.246 0.754 48 H 0.018 0.982 49 H 0.019 0.981 50 H 0.069 0.931 51 H 0.073 0.927 52 H 0.121 0.879 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.816 -13.230 -12.272 21.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.029 3.971 3 H 0.141 0.859 4 O -0.301 6.301 5 C -0.032 4.032 6 C -0.171 4.171 7 C -0.116 4.116 8 C -0.215 4.215 9 C 0.325 3.675 10 O -0.460 6.460 11 N -0.330 5.330 12 C -0.004 4.004 13 C -0.144 4.144 14 C -0.056 4.056 15 C -0.158 4.158 16 C 0.034 3.966 17 N -0.351 5.351 18 C -0.366 4.366 19 H 0.093 0.907 20 C -0.257 4.257 21 N -0.596 5.596 22 Si 0.804 3.196 23 H -0.214 1.214 24 H -0.220 1.220 25 H -0.198 1.198 26 C 0.017 3.983 27 C -0.149 4.149 28 C -0.029 4.029 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.132 0.868 34 H 0.122 0.878 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.076 0.924 45 H 0.010 0.990 46 H 0.082 0.918 47 H 0.056 0.944 48 H 0.036 0.964 49 H 0.037 0.963 50 H 0.088 0.912 51 H 0.091 0.909 52 H 0.138 0.862 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.629 -13.580 -12.342 21.726 hybrid contribution -0.693 0.762 1.258 1.626 sum 10.936 -12.819 -11.084 20.169 Atomic orbital electron populations 1.22897 0.95784 1.02688 1.03870 1.23040 0.93914 0.97274 0.82876 0.85852 1.88903 1.85919 1.21671 1.33636 1.23684 1.00048 0.83660 0.95791 1.23247 1.00601 0.97357 0.95939 1.22254 0.94711 0.98593 0.95997 1.22374 0.98949 0.99465 1.00665 1.20451 0.82747 0.85386 0.78910 1.90645 1.73347 1.17678 1.64304 1.48068 1.29331 1.06883 1.48700 1.21574 0.88763 0.99891 0.90221 1.21684 1.02625 0.93344 0.96737 1.20871 0.95826 0.94524 0.94350 1.22922 0.96583 0.96492 0.99831 1.21695 0.99036 0.92653 0.83240 1.44840 1.58164 1.24093 1.07957 1.19407 1.25283 1.01265 0.90668 0.90678 1.25541 1.00709 1.00263 0.99226 1.70054 1.39326 1.28682 1.21510 0.85127 0.76740 0.78899 0.78862 1.21417 1.22030 1.19770 1.21429 0.93535 0.87562 0.95766 1.21726 0.97044 1.00890 0.95259 1.22526 1.04205 0.78902 0.97288 0.88721 0.91296 0.94105 0.93493 0.86765 0.87775 0.89788 0.90830 0.88743 0.90331 0.89897 0.90527 0.91634 0.90672 0.89747 0.92446 0.98950 0.91763 0.94442 0.96350 0.96262 0.91232 0.90854 0.86156 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.69 8.11 71.98 0.58 -3.11 16 2 C 0.09 1.50 2.87 30.97 0.09 1.59 16 3 H 0.12 1.64 6.98 -2.39 -0.02 1.62 16 4 O -0.38 -7.70 11.20 -148.98 -1.67 -9.37 16 5 C 0.04 0.78 7.68 72.79 0.56 1.34 16 6 C -0.13 -2.26 5.99 32.02 0.19 -2.07 16 7 C -0.11 -1.98 0.62 -51.94 -0.03 -2.02 16 8 C -0.16 -2.14 7.81 71.98 0.56 -1.58 16 9 C 0.54 12.49 4.39 87.66 0.38 12.87 16 10 O -0.58 -17.47 14.83 -3.03 -0.04 -17.51 16 11 N -0.60 -12.85 2.25 -818.41 -1.84 -14.69 16 12 C 0.12 2.72 6.14 86.40 0.53 3.25 16 13 C -0.11 -2.65 4.72 30.46 0.14 -2.51 16 14 C -0.06 -1.63 0.55 -51.91 -0.03 -1.66 16 15 C -0.12 -4.01 4.92 31.81 0.16 -3.85 16 16 C 0.16 7.37 5.56 86.87 0.48 7.85 16 17 N -0.62 -31.12 3.40 -692.36 -2.36 -33.48 16 18 C -0.24 -13.13 10.28 84.03 0.86 -12.27 16 19 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 20 C -0.06 -3.62 5.49 84.86 0.47 -3.16 16 21 N -0.95 -55.27 10.09 21.65 0.22 -55.06 16 22 Si 0.97 45.26 29.55 68.60 2.03 47.29 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 C 0.14 5.59 6.42 86.48 0.56 6.14 16 27 C -0.11 -2.73 4.45 30.46 0.14 -2.59 16 28 C 0.09 1.75 3.03 86.40 0.26 2.02 16 29 H 0.09 1.62 4.03 -2.39 -0.01 1.61 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.04 0.93 6.37 -2.39 -0.02 0.92 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.10 1.33 7.84 -2.39 -0.02 1.31 16 35 H 0.08 1.71 6.85 -2.39 -0.02 1.69 16 36 H 0.07 0.95 7.89 -2.39 -0.02 0.93 16 37 H 0.09 0.92 7.48 -2.39 -0.02 0.91 16 38 H 0.08 1.15 4.03 -2.39 -0.01 1.15 16 39 H 0.08 2.07 6.99 -2.38 -0.02 2.05 16 40 H 0.08 1.69 7.56 -2.39 -0.02 1.68 16 41 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.07 1.93 8.11 -2.39 -0.02 1.91 16 43 H 0.08 2.36 6.08 -2.39 -0.01 2.35 16 44 H 0.06 1.96 8.00 -2.39 -0.02 1.94 16 45 H -0.01 -0.37 7.75 -2.39 -0.02 -0.38 16 46 H 0.06 3.51 5.89 -2.39 -0.01 3.50 16 47 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 48 H 0.02 0.74 7.78 -2.39 -0.02 0.72 16 49 H 0.02 0.76 7.83 -2.38 -0.02 0.74 16 50 H 0.07 1.98 7.47 -2.39 -0.02 1.96 16 51 H 0.07 1.68 7.40 -2.39 -0.02 1.66 16 52 H 0.12 1.78 3.21 -2.39 -0.01 1.78 16 53 H 0.09 1.61 4.81 -2.39 -0.01 1.60 16 Total: -1.00 -68.38 370.74 3.15 -65.22 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.91 Total: 17.34 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 5.91 Total: 0.25 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -3.98 Total: -103.23 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -1.71 Total: -26.88 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -68.38 3.15 -65.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035213687.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.737 kcal (2) G-P(sol) polarization free energy of solvation -68.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds