Wall clock time and date at job start Tue Mar 31 2020 20:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.87237 * 2 1 4 4 O 1.43742 * 110.00642 * 121.09440 * 2 1 3 5 5 C 1.44378 * 106.97712 * 146.00750 * 4 2 1 6 6 C 1.54993 * 103.49002 * 319.93365 * 5 4 2 7 7 C 1.54104 * 109.87598 * 238.99719 * 2 1 3 8 8 C 1.53004 * 110.48790 * 357.20239 * 7 2 1 9 9 C 1.50699 * 110.48608 * 119.71793 * 7 2 1 10 10 O 1.21273 * 120.00109 * 358.40481 * 9 7 2 11 11 N 1.34785 * 119.99711 * 178.39607 * 9 7 2 12 12 C 1.46929 * 120.57600 * 174.88690 * 11 9 7 13 13 C 1.53325 * 108.82734 * 125.48834 * 12 11 9 14 14 C 1.52461 * 109.30607 * 53.22507 * 13 12 11 15 15 C 1.54393 * 110.46451 * 177.49024 * 14 13 12 16 16 C 1.54454 * 102.88077 * 276.72435 * 15 14 13 17 17 N 1.47084 * 107.29510 * 338.50569 * 16 15 14 18 18 C 1.36935 * 125.62948 * 179.02923 * 17 16 15 19 19 H 1.08004 * 120.00036 * 179.97438 * 18 17 16 20 20 C 1.38814 * 119.99998 * 359.97357 * 18 17 16 21 21 N 1.31625 * 119.99894 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00073 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46802 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47008 * 119.99900 * 22 20 18 25 25 H 1.48495 * 109.46586 * 239.99743 * 22 20 18 26 26 C 1.47574 * 108.74540 * 359.00312 * 17 16 15 27 27 C 1.52098 * 111.69349 * 300.92238 * 14 13 12 28 28 C 1.46939 * 120.57922 * 354.87244 * 11 9 7 29 29 H 1.09005 * 109.47083 * 181.00791 * 1 2 3 30 30 H 1.09001 * 109.46797 * 301.00059 * 1 2 3 31 31 H 1.08995 * 109.47667 * 61.00205 * 1 2 3 32 32 H 1.08994 * 110.62034 * 78.43953 * 5 4 2 33 33 H 1.09005 * 110.61384 * 201.27880 * 5 4 2 34 34 H 1.08996 * 110.90942 * 278.82631 * 6 5 4 35 35 H 1.09002 * 110.90730 * 155.22449 * 6 5 4 36 36 H 1.09005 * 109.46914 * 178.86631 * 8 7 2 37 37 H 1.08995 * 109.47040 * 298.87053 * 8 7 2 38 38 H 1.09004 * 109.46669 * 58.87114 * 8 7 2 39 39 H 1.09003 * 109.60196 * 245.32933 * 12 11 9 40 40 H 1.09003 * 109.60384 * 5.64420 * 12 11 9 41 41 H 1.09001 * 109.47197 * 173.37113 * 13 12 11 42 42 H 1.08998 * 109.46797 * 293.36311 * 13 12 11 43 43 H 1.08999 * 110.73519 * 35.07384 * 15 14 13 44 44 H 1.09011 * 110.72835 * 158.37694 * 15 14 13 45 45 H 1.09005 * 109.87641 * 97.92343 * 16 15 14 46 46 H 1.08992 * 109.88273 * 219.07618 * 16 15 14 47 47 H 0.96991 * 119.99759 * 180.02562 * 21 20 18 48 48 H 1.08995 * 110.37685 * 264.50092 * 26 17 16 49 49 H 1.08997 * 110.37832 * 142.14793 * 26 17 16 50 50 H 1.09001 * 109.46641 * 299.16375 * 27 14 13 51 51 H 1.09004 * 109.46215 * 179.18238 * 27 14 13 52 52 H 1.08995 * 109.60121 * 354.19180 * 28 11 9 53 53 H 1.08995 * 109.60346 * 114.51436 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0217 -0.6976 1.1566 5 6 3.2418 -1.3609 0.7617 6 6 2.9226 -1.8882 -0.6604 7 6 2.0539 -0.7465 -1.2422 8 6 0.8897 -1.3165 -2.0550 9 6 2.8913 0.1715 -2.0949 10 8 3.0414 1.3306 -1.7714 11 7 3.4737 -0.2959 -3.2170 12 6 4.1993 0.6117 -4.1162 13 6 5.6177 0.0693 -4.3277 14 6 5.5389 -1.3816 -4.7893 15 6 6.9521 -1.9360 -5.0710 16 6 7.2336 -1.4468 -6.5087 17 7 5.9339 -1.1645 -7.1369 18 6 5.7485 -0.6910 -8.4084 19 1 4.7493 -0.5156 -8.7790 20 6 6.8448 -0.4363 -9.2209 21 7 8.0626 -0.6495 -8.7690 22 14 6.5920 0.2104 -10.9551 23 1 5.1387 0.3643 -11.2189 24 1 7.2633 1.5275 -11.0950 25 1 7.1729 -0.7474 -11.9300 26 6 4.8626 -1.4765 -6.1711 27 6 4.8158 -2.2555 -3.7760 28 6 3.3944 -1.7220 -3.5621 29 1 -0.3633 -1.0276 0.0181 30 1 -0.3633 0.5293 0.8809 31 1 -0.3634 0.4981 -0.8988 32 1 4.0708 -0.6540 0.7319 33 1 3.4664 -2.1857 1.4380 34 1 2.3591 -2.8200 -0.6124 35 1 3.8358 -2.0170 -1.2415 36 1 1.2774 -1.8230 -2.9390 37 1 0.3334 -2.0271 -1.4438 38 1 0.2290 -0.5055 -2.3614 39 1 3.6826 0.6675 -5.0744 40 1 4.2504 1.6049 -3.6700 41 1 6.1266 0.6677 -5.0834 42 1 6.1704 0.1221 -3.3897 43 1 7.6769 -1.5181 -4.3724 44 1 6.9552 -3.0252 -5.0264 45 1 7.8362 -0.5389 -6.4800 46 1 7.7552 -2.2227 -7.0688 47 1 8.8286 -0.4712 -9.3366 48 1 4.4819 -2.4839 -6.3389 49 1 4.0564 -0.7472 -6.2499 50 1 5.3567 -2.2381 -2.8298 51 1 4.7676 -3.2790 -4.1480 52 1 2.9170 -2.2689 -2.7491 53 1 2.8137 -1.8452 -4.4762 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035213688.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:37 Heat of formation + Delta-G solvation = -65.765631 kcal Electronic energy + Delta-G solvation = -31908.115658 eV Core-core repulsion = 27972.757639 eV Total energy + Delta-G solvation = -3935.358019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.37723 -40.72864 -39.28628 -37.28668 -35.40463 -34.62730 -32.82515 -32.44460 -31.72482 -30.61792 -28.60785 -27.80787 -26.90640 -26.11350 -24.53338 -24.06364 -23.35004 -22.20465 -21.68079 -20.26100 -19.10271 -18.77326 -18.00326 -17.51316 -16.92850 -16.80892 -16.46102 -16.29179 -15.97060 -15.94650 -15.64929 -14.98428 -14.94717 -14.90227 -14.63091 -14.21410 -14.10629 -13.87760 -13.76692 -13.57673 -13.34175 -13.19960 -12.95686 -12.92079 -12.81432 -12.47834 -12.45687 -12.29898 -12.25140 -12.10326 -11.99325 -11.97632 -11.85715 -11.74159 -11.70417 -11.42353 -11.22158 -11.08621 -10.70793 -10.68675 -10.53215 -9.64456 -8.84212 -7.83232 -5.16981 1.44866 1.45339 1.50818 1.55303 1.89990 2.49990 2.83783 3.34958 3.35334 3.39701 3.59356 3.66972 3.72929 3.82517 3.91674 3.94789 4.10039 4.11760 4.24516 4.28461 4.29839 4.42242 4.44723 4.56750 4.61471 4.63433 4.66084 4.68144 4.72155 4.75032 4.79100 4.82110 4.86138 4.91338 5.00462 5.02260 5.05375 5.06204 5.11499 5.13512 5.18550 5.24515 5.36303 5.38477 5.43285 5.48754 5.61985 5.72432 5.81818 5.90389 6.22722 6.39252 7.07161 7.13322 7.82211 8.46466 9.27167 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024543 B = 0.002875 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.590996 B = 9736.267746 C =10122.351320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.080 3.920 3 H 0.057 0.943 4 O -0.388 6.388 5 C 0.040 3.960 6 C -0.145 4.145 7 C -0.105 4.105 8 C -0.147 4.147 9 C 0.522 3.478 10 O -0.586 6.586 11 N -0.596 5.596 12 C 0.119 3.881 13 C -0.101 4.101 14 C -0.059 4.059 15 C -0.122 4.122 16 C 0.188 3.812 17 N -0.624 5.624 18 C -0.233 4.233 19 H 0.081 0.919 20 C -0.068 4.068 21 N -0.952 5.952 22 Si 0.972 3.028 23 H -0.265 1.265 24 H -0.296 1.296 25 H -0.293 1.293 26 C 0.143 3.857 27 C -0.111 4.111 28 C 0.091 3.909 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.049 0.951 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.003 0.997 46 H 0.001 0.999 47 H 0.244 0.756 48 H 0.029 0.971 49 H 0.039 0.961 50 H 0.080 0.920 51 H 0.098 0.902 52 H 0.127 0.873 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.392 -7.402 18.827 24.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.022 3.978 3 H 0.075 0.925 4 O -0.307 6.307 5 C -0.036 4.036 6 C -0.182 4.182 7 C -0.109 4.109 8 C -0.204 4.204 9 C 0.312 3.688 10 O -0.466 6.466 11 N -0.327 5.327 12 C -0.003 4.003 13 C -0.139 4.139 14 C -0.060 4.060 15 C -0.160 4.160 16 C 0.062 3.938 17 N -0.350 5.350 18 C -0.363 4.363 19 H 0.099 0.901 20 C -0.261 4.261 21 N -0.601 5.601 22 Si 0.801 3.199 23 H -0.189 1.189 24 H -0.223 1.223 25 H -0.221 1.221 26 C 0.019 3.981 27 C -0.149 4.149 28 C -0.030 4.030 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.021 0.979 46 H 0.019 0.981 47 H 0.053 0.947 48 H 0.047 0.953 49 H 0.057 0.943 50 H 0.098 0.902 51 H 0.117 0.883 52 H 0.144 0.856 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.320 -6.743 19.005 24.733 hybrid contribution 0.994 1.093 -1.737 2.281 sum -13.326 -5.650 17.268 22.532 Atomic orbital electron populations 1.22009 0.91731 1.03912 1.02583 1.22740 0.96501 0.95406 0.83155 0.92550 1.88850 1.40128 1.68134 1.33614 1.23699 0.86837 0.96743 0.96362 1.23543 1.00804 0.98079 0.95780 1.22087 0.97178 0.95813 0.95804 1.22254 0.95733 1.02002 1.00365 1.20859 0.79193 0.87995 0.80787 1.90648 1.63478 1.20731 1.71763 1.48066 1.52421 1.10046 1.22195 1.21470 0.92117 0.93628 0.93124 1.21538 0.95945 0.96053 1.00357 1.21030 0.95439 0.94766 0.94742 1.22746 0.96543 1.00647 0.96112 1.20870 0.87031 0.95991 0.89864 1.44797 1.02293 1.76492 1.11445 1.19463 0.92939 1.34850 0.89017 0.90106 1.25585 0.95235 1.03022 1.02253 1.70204 0.97496 1.55902 1.36545 0.85089 0.77766 0.76982 0.80028 1.18927 1.22338 1.22065 1.21754 0.90950 0.97421 0.88000 1.21762 0.94877 0.99489 0.98776 1.22467 0.97911 0.79251 1.03340 0.89760 0.92275 0.90554 0.93871 0.86146 0.85927 0.88561 0.89959 0.88364 0.91777 0.91568 0.90907 0.93213 0.91664 0.91074 0.90393 0.97878 0.98113 0.94683 0.95282 0.94290 0.90172 0.88323 0.85579 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.40 71.98 0.60 -1.64 16 2 C 0.08 1.67 3.66 30.97 0.11 1.78 16 3 H 0.06 1.57 6.44 -2.39 -0.02 1.56 16 4 O -0.39 -8.30 11.19 -148.98 -1.67 -9.97 16 5 C 0.04 0.64 7.72 72.66 0.56 1.20 16 6 C -0.14 -1.79 4.72 31.90 0.15 -1.64 16 7 C -0.11 -1.81 0.61 -51.93 -0.03 -1.85 16 8 C -0.15 -1.70 6.95 71.98 0.50 -1.20 16 9 C 0.52 13.11 6.46 87.66 0.57 13.68 16 10 O -0.59 -19.95 14.67 -3.01 -0.04 -19.99 16 11 N -0.60 -13.84 2.95 -818.34 -2.41 -16.26 16 12 C 0.12 3.48 6.12 86.41 0.53 4.01 16 13 C -0.10 -3.15 4.86 30.52 0.15 -3.00 16 14 C -0.06 -1.72 0.54 -51.80 -0.03 -1.75 16 15 C -0.12 -4.13 5.89 31.56 0.19 -3.95 16 16 C 0.19 9.07 5.02 86.76 0.44 9.51 16 17 N -0.62 -30.85 3.39 -692.74 -2.35 -33.19 16 18 C -0.23 -12.87 10.28 84.03 0.86 -12.01 16 19 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 20 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 21 N -0.95 -57.60 10.31 21.65 0.22 -57.38 16 22 Si 0.97 45.99 29.55 68.60 2.03 48.01 16 23 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 26 C 0.14 5.25 5.24 86.56 0.45 5.70 16 27 C -0.11 -2.10 4.70 30.41 0.14 -1.96 16 28 C 0.09 1.52 3.61 86.41 0.31 1.83 16 29 H 0.08 0.98 6.75 -2.38 -0.02 0.96 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.09 6.80 -2.39 -0.02 1.08 16 32 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.12 0.82 7.84 -2.39 -0.02 0.81 16 35 H 0.10 1.15 5.50 -2.39 -0.01 1.13 16 36 H 0.08 0.81 5.14 -2.38 -0.01 0.80 16 37 H 0.10 0.71 6.85 -2.39 -0.02 0.70 16 38 H 0.06 0.83 6.65 -2.38 -0.02 0.82 16 39 H 0.07 2.03 6.59 -2.39 -0.02 2.01 16 40 H 0.07 2.35 6.99 -2.39 -0.02 2.33 16 41 H 0.05 1.93 7.85 -2.39 -0.02 1.92 16 42 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.07 2.24 8.01 -2.39 -0.02 2.22 16 44 H 0.08 2.33 8.00 -2.38 -0.02 2.32 16 45 H 0.00 0.17 7.38 -2.38 -0.02 0.15 16 46 H 0.00 0.04 7.50 -2.39 -0.02 0.02 16 47 H 0.24 14.42 8.31 -92.71 -0.77 13.65 16 48 H 0.03 1.02 7.97 -2.39 -0.02 1.00 16 49 H 0.04 1.42 6.21 -2.39 -0.01 1.41 16 50 H 0.08 1.34 7.58 -2.39 -0.02 1.32 16 51 H 0.10 1.58 8.09 -2.38 -0.02 1.56 16 52 H 0.13 1.33 3.29 -2.39 -0.01 1.32 16 53 H 0.08 1.32 7.59 -2.39 -0.02 1.30 16 Total: -1.00 -74.20 377.38 2.65 -71.55 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.90 Total: 11.93 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 5.97 Total: 5.30 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -4.54 Total: -106.83 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -1.71 Total: -29.96 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -74.20 2.65 -71.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035213688.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.782 kcal (2) G-P(sol) polarization free energy of solvation -74.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds