Wall clock time and date at job start Tue Mar 31 2020 20:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.28285 * 2 1 4 4 C 1.55503 * 110.36774 * 237.88671 * 2 1 3 5 5 C 1.55305 * 100.69731 * 204.61167 * 4 2 1 6 6 C 1.54382 * 102.43395 * 34.13038 * 5 4 2 7 7 H 1.09007 * 109.82575 * 98.14672 * 6 5 4 8 8 C 1.53000 * 109.83046 * 219.02208 * 6 5 4 9 9 C 1.50695 * 109.47203 * 184.99929 * 8 6 5 10 10 O 1.21277 * 120.00179 * 0.02562 * 9 8 6 11 11 N 1.34779 * 119.99866 * 180.02562 * 9 8 6 12 12 C 1.46924 * 120.55088 * 359.72665 * 11 9 8 13 13 C 1.52908 * 108.92694 * 234.31603 * 12 11 9 14 14 C 1.52110 * 109.50831 * 306.92682 * 13 12 11 15 15 C 1.54398 * 110.51402 * 295.78164 * 14 13 12 16 16 C 1.54453 * 102.86937 * 276.65226 * 15 14 13 17 17 N 1.47081 * 107.29917 * 338.49893 * 16 15 14 18 18 C 1.36943 * 125.62739 * 179.02924 * 17 16 15 19 19 H 1.08004 * 119.99525 * 179.97438 * 18 17 16 20 20 C 1.38808 * 120.00279 * 359.97438 * 18 17 16 21 21 N 1.31621 * 119.99623 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00227 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47113 * 60.00335 * 22 20 18 24 24 H 1.48495 * 109.47279 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47025 * 300.00078 * 22 20 18 26 26 C 1.47568 * 108.74520 * 359.01178 * 17 16 15 27 27 C 1.52115 * 111.59960 * 59.17187 * 14 13 12 28 28 C 1.46930 * 120.54946 * 180.02562 * 11 9 8 29 29 O 1.43232 * 107.59109 * 338.54226 * 6 5 4 30 30 H 1.09001 * 109.47315 * 299.36830 * 1 2 3 31 31 H 1.09004 * 109.46702 * 59.36242 * 1 2 3 32 32 H 1.08994 * 109.47587 * 179.36047 * 1 2 3 33 33 H 1.08999 * 111.32643 * 86.74107 * 4 2 1 34 34 H 1.08995 * 111.14910 * 322.41529 * 4 2 1 35 35 H 1.09002 * 110.85041 * 275.83884 * 5 4 2 36 36 H 1.09001 * 110.84389 * 152.42021 * 5 4 2 37 37 H 1.08999 * 109.47222 * 305.00753 * 8 6 5 38 38 H 1.09007 * 109.46415 * 65.00416 * 8 6 5 39 39 H 1.09000 * 109.60389 * 354.12044 * 12 11 9 40 40 H 1.09003 * 109.60409 * 114.60080 * 12 11 9 41 41 H 1.09000 * 109.54954 * 186.85631 * 13 12 11 42 42 H 1.08996 * 109.34099 * 66.87247 * 13 12 11 43 43 H 1.08998 * 110.73092 * 34.99930 * 15 14 13 44 44 H 1.09002 * 110.73278 * 158.31117 * 15 14 13 45 45 H 1.09002 * 109.87483 * 97.92578 * 16 15 14 46 46 H 1.08992 * 109.87890 * 218.92222 * 16 15 14 47 47 H 0.97003 * 119.99769 * 179.97438 * 21 20 18 48 48 H 1.09000 * 110.37453 * 264.49459 * 26 17 16 49 49 H 1.09001 * 110.38283 * 142.14536 * 26 17 16 50 50 H 1.09003 * 109.47381 * 180.70032 * 27 14 13 51 51 H 1.08999 * 109.47168 * 60.68676 * 27 14 13 52 52 H 1.08995 * 109.60166 * 245.39908 * 28 11 9 53 53 H 1.09004 * 109.60145 * 5.87687 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0712 -0.7750 -1.2348 5 6 3.4722 -1.2002 -0.7168 6 6 3.2124 -1.4394 0.7861 7 1 3.0665 -2.5037 0.9712 8 6 4.3989 -0.9282 1.6057 9 6 4.1933 -1.2753 3.0576 10 8 3.1961 -1.8731 3.4029 11 7 5.1175 -0.9213 3.9726 12 6 6.3327 -0.2021 3.5669 13 6 7.5551 -0.9701 4.0709 14 6 7.4166 -1.2215 5.5647 15 6 7.4197 0.1134 6.3406 16 6 8.9259 0.4218 6.4886 17 7 9.6501 -0.8486 6.3305 18 6 11.0101 -1.0024 6.3750 19 1 11.4471 -1.9818 6.2475 20 6 11.8269 0.1002 6.5841 21 7 11.2941 1.2938 6.7391 22 14 13.6820 -0.1098 6.6457 23 1 14.1597 -0.6706 5.3563 24 1 14.3221 1.2098 6.8783 25 1 14.0389 -1.0353 7.7507 26 6 8.6692 -1.9301 6.1163 27 6 6.1622 -2.0205 5.8842 28 6 4.9295 -1.2540 5.3913 29 8 2.0285 -0.7158 1.1413 30 1 -0.3634 0.5040 0.8956 31 1 -0.3633 0.5237 -0.8843 32 1 -0.3634 -1.0275 -0.0115 33 1 2.1550 -0.1246 -2.1054 34 1 1.4528 -1.6451 -1.4549 35 1 4.1988 -0.4009 -0.8625 36 1 3.8039 -2.1172 -1.2039 37 1 5.3163 -1.3948 1.2469 38 1 4.4755 0.1538 1.4981 39 1 6.3700 -0.1312 2.4798 40 1 6.3280 0.7978 4.0009 41 1 8.4559 -0.3859 3.8828 42 1 7.6239 -1.9233 3.5469 43 1 6.9204 0.8942 5.7670 44 1 6.9528 -0.0074 7.3181 45 1 9.2378 1.1249 5.7162 46 1 9.1229 0.8430 7.4743 47 1 11.8649 2.0643 6.8856 48 1 8.4400 -2.4267 7.0591 49 1 9.0491 -2.6489 5.3902 50 1 6.0909 -2.1696 6.9616 51 1 6.2113 -2.9885 5.3856 52 1 4.8138 -0.3374 5.9696 53 1 4.0420 -1.8763 5.5065 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035223788.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:41 Heat of formation + Delta-G solvation = -83.625544 kcal Electronic energy + Delta-G solvation = -30540.645935 eV Core-core repulsion = 26604.513452 eV Total energy + Delta-G solvation = -3936.132483 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.64108 -40.60720 -39.58640 -37.13491 -34.79636 -33.88141 -33.13084 -32.57529 -32.02010 -30.44407 -30.09508 -28.19558 -26.17298 -25.39496 -24.35022 -23.64716 -22.36154 -21.98800 -21.77236 -20.58665 -19.28593 -18.48441 -18.04016 -17.83831 -16.88824 -16.78048 -16.69300 -16.34558 -16.12555 -15.65041 -15.25673 -14.93402 -14.82279 -14.75636 -14.36663 -14.28886 -13.99451 -13.88545 -13.74966 -13.51419 -13.38819 -13.06656 -12.94559 -12.90146 -12.72185 -12.67530 -12.53587 -12.29776 -12.23244 -12.08683 -11.98439 -11.93543 -11.76839 -11.70164 -11.60190 -11.45990 -11.21477 -11.04678 -10.68227 -10.65063 -10.40768 -9.55331 -8.84186 -7.81919 -5.16339 1.46414 1.49110 1.55382 1.72417 2.06843 2.51346 2.90126 3.35759 3.52681 3.63375 3.63675 3.73243 3.81425 3.84170 3.89329 4.00662 4.17407 4.20329 4.25574 4.27433 4.36557 4.43835 4.49638 4.50409 4.58631 4.62941 4.65807 4.71314 4.74832 4.83571 4.85038 4.86682 4.90686 4.91745 4.94924 4.99258 5.08403 5.09858 5.14700 5.17107 5.20675 5.29352 5.35861 5.42248 5.46680 5.49035 5.66748 5.73450 5.84250 6.23392 6.28605 6.49520 7.14308 7.26590 7.82004 8.47050 9.27975 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.023553 B = 0.002313 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.534694 B =12101.063349 C =12605.299412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 H 0.073 0.927 4 C -0.145 4.145 5 C -0.146 4.146 6 C 0.093 3.907 7 H 0.064 0.936 8 C -0.148 4.148 9 C 0.511 3.489 10 O -0.578 6.578 11 N -0.609 5.609 12 C 0.113 3.887 13 C -0.106 4.106 14 C -0.057 4.057 15 C -0.121 4.121 16 C 0.191 3.809 17 N -0.624 5.624 18 C -0.239 4.239 19 H 0.079 0.921 20 C -0.066 4.066 21 N -0.950 5.950 22 Si 0.975 3.025 23 H -0.276 1.276 24 H -0.295 1.295 25 H -0.281 1.281 26 C 0.141 3.859 27 C -0.105 4.105 28 C 0.117 3.883 29 O -0.394 6.394 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.129 0.871 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.014 0.986 46 H -0.003 1.003 47 H 0.246 0.754 48 H 0.017 0.983 49 H 0.038 0.962 50 H 0.080 0.920 51 H 0.065 0.935 52 H 0.072 0.928 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.331 -2.618 -17.203 25.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.001 3.999 3 H 0.091 0.909 4 C -0.182 4.182 5 C -0.183 4.183 6 C 0.034 3.966 7 H 0.082 0.918 8 C -0.187 4.187 9 C 0.302 3.698 10 O -0.458 6.458 11 N -0.342 5.342 12 C -0.009 4.009 13 C -0.144 4.144 14 C -0.058 4.058 15 C -0.159 4.159 16 C 0.066 3.934 17 N -0.350 5.350 18 C -0.368 4.368 19 H 0.096 0.904 20 C -0.259 4.259 21 N -0.599 5.599 22 Si 0.804 3.196 23 H -0.202 1.202 24 H -0.221 1.221 25 H -0.207 1.207 26 C 0.016 3.984 27 C -0.143 4.143 28 C -0.006 4.006 29 O -0.314 6.314 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.147 0.853 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.032 0.968 46 H 0.015 0.985 47 H 0.055 0.945 48 H 0.035 0.965 49 H 0.056 0.944 50 H 0.098 0.902 51 H 0.084 0.916 52 H 0.090 0.910 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.765 -2.806 -16.787 25.333 hybrid contribution 1.515 0.112 0.680 1.665 sum -17.249 -2.694 -16.107 23.753 Atomic orbital electron populations 1.21874 0.93594 1.02434 1.02702 1.23318 0.95329 0.95878 0.85362 0.90940 1.23396 0.95764 1.00958 0.98101 1.23198 0.98464 1.04153 0.92500 1.22496 0.84163 0.95611 0.94290 0.91798 1.22244 1.01207 1.04938 0.90347 1.21143 0.81795 0.77787 0.89121 1.90674 1.29993 1.42992 1.82164 1.48236 1.21117 1.57156 1.07715 1.21818 0.82169 0.95095 1.01804 1.21469 0.97803 1.00977 0.94173 1.20933 0.94025 0.95293 0.95559 1.22790 0.96140 0.97216 0.99798 1.20865 0.88283 0.87340 0.96949 1.44786 1.01438 1.04005 1.84748 1.19385 0.81937 0.94043 1.41477 0.90352 1.25594 1.02272 0.95327 1.02698 1.70184 1.34288 0.98542 1.56925 0.85199 0.80085 0.76195 0.78136 1.20177 1.22144 1.20692 1.21666 0.89151 0.90933 0.96672 1.21618 0.92649 0.98316 1.01742 1.21520 0.98063 1.00008 0.80964 1.88598 1.42643 1.64957 1.35177 0.93189 0.89147 0.92726 0.87795 0.90438 0.88577 0.88526 0.85313 0.86932 0.86990 0.90793 0.91935 0.91341 0.90148 0.91728 0.96804 0.98491 0.94519 0.96497 0.94364 0.90172 0.91647 0.90955 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.63 71.98 0.69 -1.47 16 2 C 0.06 0.93 4.08 31.45 0.13 1.06 16 3 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 4 C -0.14 -1.55 6.61 32.25 0.21 -1.34 16 5 C -0.15 -1.59 6.53 31.86 0.21 -1.38 16 6 C 0.09 1.76 3.04 31.06 0.09 1.85 16 7 H 0.06 1.45 7.94 -2.38 -0.02 1.43 16 8 C -0.15 -2.58 3.61 29.85 0.11 -2.47 16 9 C 0.51 13.35 7.59 87.66 0.67 14.01 16 10 O -0.58 -19.99 14.90 8.34 0.12 -19.86 16 11 N -0.61 -14.84 2.97 -819.25 -2.43 -17.27 16 12 C 0.11 2.45 6.01 86.27 0.52 2.97 16 13 C -0.11 -2.95 4.84 30.27 0.15 -2.80 16 14 C -0.06 -1.79 0.55 -51.91 -0.03 -1.81 16 15 C -0.12 -4.22 4.92 31.56 0.16 -4.06 16 16 C 0.19 9.20 5.00 86.76 0.43 9.63 16 17 N -0.62 -31.47 3.39 -692.78 -2.35 -33.82 16 18 C -0.24 -13.33 10.28 84.03 0.86 -12.46 16 19 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 20 C -0.07 -3.74 5.49 84.86 0.47 -3.27 16 21 N -0.95 -56.81 10.31 21.65 0.22 -56.59 16 22 Si 0.98 45.60 29.55 68.60 2.03 47.63 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 24 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 26 C 0.14 5.61 6.15 86.55 0.53 6.14 16 27 C -0.10 -2.75 4.84 30.40 0.15 -2.61 16 28 C 0.12 2.99 6.16 86.40 0.53 3.52 16 29 O -0.39 -9.56 10.07 -137.62 -1.39 -10.95 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 31 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.85 8.07 -2.39 -0.02 0.83 16 35 H 0.10 0.75 7.85 -2.39 -0.02 0.73 16 36 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.13 1.56 7.69 -2.39 -0.02 1.54 16 38 H 0.11 1.63 7.94 -2.38 -0.02 1.61 16 39 H 0.11 1.73 5.92 -2.39 -0.01 1.71 16 40 H 0.07 1.64 6.55 -2.39 -0.02 1.62 16 41 H 0.06 2.11 7.82 -2.39 -0.02 2.09 16 42 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.08 2.47 6.18 -2.39 -0.01 2.46 16 44 H 0.06 2.15 7.98 -2.39 -0.02 2.13 16 45 H 0.01 0.74 7.38 -2.39 -0.02 0.72 16 46 H 0.00 -0.18 7.50 -2.39 -0.02 -0.19 16 47 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 48 H 0.02 0.69 7.99 -2.39 -0.02 0.67 16 49 H 0.04 1.50 8.02 -2.39 -0.02 1.48 16 50 H 0.08 2.03 8.09 -2.39 -0.02 2.01 16 51 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 52 H 0.07 1.77 7.62 -2.39 -0.02 1.75 16 53 H 0.08 2.21 6.99 -2.39 -0.02 2.19 16 Total: -1.00 -74.28 396.64 2.96 -71.33 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.87 Total: 14.03 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 5.88 Total: 5.51 kcal Atomic # 7 Polarization: -103.13 SS G_CDS: -4.55 Total: -107.69 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -1.26 Total: -30.81 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -74.28 2.96 -71.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035223788.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.299 kcal (2) G-P(sol) polarization free energy of solvation -74.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds