Wall clock time and date at job start Tue Mar 31 2020 20:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08994 * 109.90294 * 2 1 4 4 C 1.54385 * 109.83086 * 120.93512 * 2 1 3 5 5 C 1.55306 * 102.25244 * 140.86747 * 4 2 1 6 6 C 1.54945 * 100.94232 * 325.86335 * 5 4 2 7 7 H 1.09003 * 110.39454 * 277.48847 * 6 5 4 8 8 C 1.53001 * 110.30957 * 155.36000 * 6 5 4 9 9 C 1.50700 * 109.47484 * 177.83459 * 8 6 5 10 10 O 1.21286 * 119.99606 * 0.02562 * 9 8 6 11 11 N 1.34769 * 120.00446 * 179.72383 * 9 8 6 12 12 C 1.46930 * 120.56201 * 0.02562 * 11 9 8 13 13 C 1.52877 * 108.93896 * 234.21127 * 12 11 9 14 14 C 1.52270 * 109.48620 * 306.70376 * 13 12 11 15 15 C 1.54525 * 110.20363 * 182.06357 * 14 13 12 16 16 C 1.55023 * 101.52904 * 153.22242 * 15 14 13 17 17 N 1.47485 * 104.90361 * 323.61932 * 16 15 14 18 18 C 1.36941 * 125.65897 * 203.99855 * 17 16 15 19 19 H 1.07998 * 119.99489 * 170.02485 * 18 17 16 20 20 C 1.38808 * 120.00359 * 350.02666 * 18 17 16 21 21 N 1.31620 * 120.00045 * 350.40476 * 20 18 17 22 22 Si 1.86794 * 120.00262 * 170.40478 * 20 18 17 23 23 H 1.48502 * 109.47065 * 94.13950 * 22 20 18 24 24 H 1.48501 * 109.47503 * 214.13768 * 22 20 18 25 25 H 1.48503 * 109.47061 * 334.14382 * 22 20 18 26 26 C 1.47174 * 108.67468 * 24.02191 * 17 16 15 27 27 C 1.52269 * 111.27207 * 59.50760 * 14 13 12 28 28 C 1.46931 * 120.56522 * 180.27619 * 11 9 8 29 29 O 1.43241 * 109.82717 * 239.06371 * 2 1 3 30 30 H 1.09004 * 109.47754 * 179.48181 * 1 2 3 31 31 H 1.09006 * 109.47048 * 299.47845 * 1 2 3 32 32 H 1.09000 * 109.47635 * 59.48026 * 1 2 3 33 33 H 1.08999 * 110.84588 * 259.05655 * 4 2 1 34 34 H 1.08996 * 110.85153 * 22.47439 * 4 2 1 35 35 H 1.09008 * 111.12246 * 207.94889 * 5 4 2 36 36 H 1.08997 * 111.12686 * 83.78799 * 5 4 2 37 37 H 1.09006 * 109.46965 * 57.83760 * 8 6 5 38 38 H 1.08996 * 109.47167 * 297.83665 * 8 6 5 39 39 H 1.08997 * 109.59549 * 354.02117 * 12 11 9 40 40 H 1.09000 * 109.60161 * 114.48802 * 12 11 9 41 41 H 1.08998 * 109.55047 * 186.63149 * 13 12 11 42 42 H 1.09007 * 109.34205 * 66.64349 * 13 12 11 43 43 H 1.09000 * 111.01266 * 271.28086 * 15 14 13 44 44 H 1.08996 * 111.01059 * 35.15920 * 15 14 13 45 45 H 1.09005 * 110.35348 * 204.76496 * 16 15 14 46 46 H 1.08995 * 110.44514 * 82.52511 * 16 15 14 47 47 H 0.96995 * 120.00378 * 180.02562 * 21 20 18 48 48 H 1.09001 * 109.90374 * 239.12149 * 26 17 16 49 49 H 1.09000 * 109.90548 * 117.86285 * 26 17 16 50 50 H 1.09004 * 109.48269 * 180.38608 * 27 14 13 51 51 H 1.08999 * 109.49102 * 60.36154 * 27 14 13 52 52 H 1.09007 * 109.59613 * 245.51329 * 28 11 9 53 53 H 1.09001 * 109.59620 * 5.82363 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9009 1.0248 0.0000 4 6 2.0536 -0.7466 1.2457 5 6 3.2729 -1.5222 0.6767 6 6 2.7745 -1.8446 -0.7546 7 1 2.1402 -2.7310 -0.7453 8 6 3.9623 -2.0524 -1.6963 9 6 3.4577 -2.4166 -3.0688 10 8 2.2652 -2.5011 -3.2737 11 7 4.3311 -2.6424 -4.0700 12 6 5.7780 -2.5374 -3.8371 13 6 6.3752 -1.5657 -4.8550 14 6 5.9759 -1.9936 -6.2607 15 6 6.6138 -1.0519 -7.3067 16 6 6.7057 -1.9807 -8.5445 17 7 7.0283 -3.3116 -7.9970 18 6 7.6476 -4.3260 -8.6773 19 1 7.9851 -5.2043 -8.1472 20 6 7.8417 -4.2252 -10.0480 21 7 7.2691 -3.2518 -10.7240 22 14 8.9155 -5.4711 -10.9334 23 1 8.0653 -6.5624 -11.4732 24 1 9.6314 -4.8031 -12.0499 25 1 9.9035 -6.0386 -9.9809 26 6 6.5735 -3.3687 -6.5985 27 6 4.4620 -2.0117 -6.4235 28 6 3.8524 -2.9923 -5.4144 29 8 2.0157 -0.6927 -1.1558 30 1 -0.3635 -1.0276 -0.0093 31 1 -0.3633 0.5057 0.8947 32 1 -0.3634 0.5219 -0.8853 33 1 2.3671 -0.0426 2.0165 34 1 1.2999 -1.4323 1.6325 35 1 3.4570 -2.4350 1.2434 36 1 4.1619 -0.8922 0.6506 37 1 4.5916 -2.8568 -1.3153 38 1 4.5443 -1.1327 -1.7554 39 1 5.9599 -2.1659 -2.8287 40 1 6.2397 -3.5175 -3.9569 41 1 7.4618 -1.5693 -4.7688 42 1 5.9983 -0.5616 -4.6598 43 1 5.9690 -0.1963 -7.5070 44 1 7.6040 -0.7269 -6.9875 45 1 7.4978 -1.6437 -9.2133 46 1 5.7519 -2.0084 -9.0713 47 1 7.4044 -3.1816 -11.6819 48 1 7.4181 -3.5778 -5.9419 49 1 5.8131 -4.1416 -6.4868 50 1 4.2090 -2.3277 -7.4356 51 1 4.0651 -1.0124 -6.2450 52 1 4.1612 -4.0086 -5.6594 53 1 2.7650 -2.9232 -5.4447 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035223791.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:54 Heat of formation + Delta-G solvation = -85.480944 kcal Electronic energy + Delta-G solvation = -30544.106899 eV Core-core repulsion = 26607.893960 eV Total energy + Delta-G solvation = -3936.212939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.63198 -40.60263 -39.60969 -37.12501 -34.84067 -33.89950 -33.12869 -32.47258 -32.22760 -30.70917 -29.84471 -27.73742 -26.49792 -25.61317 -24.14875 -23.73033 -22.36337 -22.05305 -21.76114 -20.56886 -18.99279 -18.83499 -17.93935 -17.88080 -16.97080 -16.80115 -16.67211 -16.39908 -16.09564 -15.64886 -15.26823 -15.03566 -14.82988 -14.60996 -14.27720 -14.14385 -14.02455 -13.99628 -13.78930 -13.56132 -13.43952 -13.09064 -12.89507 -12.84111 -12.75358 -12.68925 -12.51546 -12.42935 -12.25642 -12.17965 -11.97761 -11.93393 -11.72432 -11.64924 -11.63816 -11.43473 -11.20917 -11.12674 -10.67305 -10.62209 -10.39030 -9.55905 -8.81573 -7.86621 -5.20161 1.45449 1.46590 1.56330 1.72710 2.06085 2.50396 2.90021 3.32112 3.55144 3.61076 3.66352 3.71841 3.80885 3.90735 3.93922 3.97644 4.13750 4.20667 4.22404 4.30041 4.32078 4.43545 4.49951 4.53262 4.59604 4.63261 4.68693 4.69430 4.74374 4.77325 4.81348 4.82142 4.92354 4.93229 4.95556 5.04724 5.08971 5.09317 5.12231 5.15732 5.24552 5.26973 5.39102 5.39539 5.46701 5.48320 5.63038 5.65603 5.77638 6.22761 6.28929 6.52655 7.10272 7.27247 7.79810 8.47024 9.25494 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.031390 B = 0.002226 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.793751 B =12578.212277 C =12713.415496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.061 3.939 3 H 0.083 0.917 4 C -0.146 4.146 5 C -0.142 4.142 6 C 0.089 3.911 7 H 0.052 0.948 8 C -0.133 4.133 9 C 0.508 3.492 10 O -0.584 6.584 11 N -0.608 5.608 12 C 0.105 3.895 13 C -0.110 4.110 14 C -0.057 4.057 15 C -0.123 4.123 16 C 0.180 3.820 17 N -0.624 5.624 18 C -0.239 4.239 19 H 0.079 0.921 20 C -0.068 4.068 21 N -0.950 5.950 22 Si 0.976 3.024 23 H -0.289 1.289 24 H -0.294 1.294 25 H -0.266 1.266 26 C 0.144 3.856 27 C -0.104 4.104 28 C 0.119 3.881 29 O -0.396 6.396 30 H 0.047 0.953 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.139 0.861 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.028 0.972 46 H -0.010 1.010 47 H 0.246 0.754 48 H 0.036 0.964 49 H 0.015 0.985 50 H 0.050 0.950 51 H 0.068 0.932 52 H 0.062 0.938 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.197 7.086 28.415 29.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.004 3.996 3 H 0.101 0.899 4 C -0.183 4.183 5 C -0.179 4.179 6 C 0.031 3.969 7 H 0.070 0.930 8 C -0.172 4.172 9 C 0.298 3.702 10 O -0.464 6.464 11 N -0.341 5.341 12 C -0.016 4.016 13 C -0.149 4.149 14 C -0.058 4.058 15 C -0.161 4.161 16 C 0.055 3.945 17 N -0.350 5.350 18 C -0.368 4.368 19 H 0.097 0.903 20 C -0.261 4.261 21 N -0.599 5.599 22 Si 0.804 3.196 23 H -0.216 1.216 24 H -0.221 1.221 25 H -0.191 1.191 26 C 0.019 3.981 27 C -0.143 4.143 28 C -0.004 4.004 29 O -0.317 6.317 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.157 0.843 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.092 0.908 41 H 0.111 0.889 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.046 0.954 46 H 0.008 0.992 47 H 0.055 0.945 48 H 0.054 0.946 49 H 0.033 0.967 50 H 0.068 0.932 51 H 0.086 0.914 52 H 0.080 0.920 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.794 7.038 27.922 29.372 hybrid contribution 0.071 -0.847 -1.649 1.855 sum -5.723 6.191 26.273 27.592 Atomic orbital electron populations 1.22131 0.95353 1.01914 1.02406 1.22930 0.94419 0.96722 0.85546 0.89940 1.23181 0.97856 0.99968 0.97340 1.23323 0.98940 1.02361 0.93318 1.22771 0.91212 0.89069 0.93820 0.92958 1.22006 0.99176 1.05962 0.90036 1.21324 0.85665 0.75511 0.87697 1.90688 1.17951 1.53452 1.84271 1.48236 1.07817 1.68815 1.09274 1.21959 0.77995 1.00573 1.01101 1.21708 1.01882 0.99655 0.91608 1.20908 0.94053 0.94699 0.96144 1.22878 1.00614 0.97067 0.95536 1.21162 0.96210 0.84143 0.92967 1.44857 1.69010 1.11679 1.09483 1.19402 1.29047 0.98056 0.90326 0.90303 1.25658 1.02475 1.00925 0.97034 1.70175 1.47665 1.35465 1.06596 0.85107 0.78505 0.77948 0.78029 1.21636 1.22069 1.19096 1.21534 0.95617 0.95377 0.85533 1.21604 0.94908 0.99565 0.98182 1.21422 0.99229 0.97940 0.81853 1.88575 1.71200 1.40555 1.31325 0.93351 0.89486 0.93601 0.87964 0.90335 0.87934 0.88465 0.84307 0.86150 0.85849 0.90786 0.88941 0.90357 0.90660 0.90817 0.95390 0.99183 0.94462 0.94605 0.96667 0.93159 0.91382 0.91987 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.44 71.98 0.68 -1.94 16 2 C 0.06 1.00 4.16 31.06 0.13 1.13 16 3 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.15 -1.45 6.55 31.86 0.21 -1.25 16 5 C -0.14 -1.32 6.57 32.05 0.21 -1.11 16 6 C 0.09 1.60 2.92 31.26 0.09 1.69 16 7 H 0.05 1.15 8.00 -2.39 -0.02 1.13 16 8 C -0.13 -2.06 3.79 29.85 0.11 -1.95 16 9 C 0.51 13.33 7.60 87.66 0.67 13.99 16 10 O -0.58 -21.11 14.94 8.31 0.12 -20.99 16 11 N -0.61 -15.23 2.97 -819.18 -2.43 -17.66 16 12 C 0.11 1.92 6.04 86.26 0.52 2.44 16 13 C -0.11 -2.39 4.69 30.31 0.14 -2.25 16 14 C -0.06 -1.81 0.53 -51.91 -0.03 -1.84 16 15 C -0.12 -4.39 5.99 31.81 0.19 -4.20 16 16 C 0.18 8.96 5.10 86.88 0.44 9.40 16 17 N -0.62 -32.05 3.40 -692.45 -2.36 -34.40 16 18 C -0.24 -13.50 10.24 84.03 0.86 -12.64 16 19 H 0.08 4.26 7.85 -2.91 -0.02 4.24 16 20 C -0.07 -3.92 5.40 84.86 0.46 -3.46 16 21 N -0.95 -58.27 10.68 21.65 0.23 -58.04 16 22 Si 0.98 46.24 29.56 68.60 2.03 48.27 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 24 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 C 0.14 5.67 5.44 86.48 0.47 6.14 16 27 C -0.10 -3.39 4.78 30.47 0.15 -3.24 16 28 C 0.12 3.66 6.15 86.41 0.53 4.20 16 29 O -0.40 -9.61 10.07 -137.62 -1.39 -11.00 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.08 0.77 7.85 -2.39 -0.02 0.75 16 35 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.10 0.62 8.06 -2.39 -0.02 0.60 16 37 H 0.14 1.18 7.94 -2.38 -0.02 1.16 16 38 H 0.12 1.42 7.69 -2.39 -0.02 1.41 16 39 H 0.12 1.24 5.92 -2.39 -0.01 1.22 16 40 H 0.07 1.39 7.47 -2.39 -0.02 1.38 16 41 H 0.09 1.81 8.10 -2.39 -0.02 1.79 16 42 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.07 2.44 8.01 -2.39 -0.02 2.42 16 44 H 0.07 2.45 8.01 -2.39 -0.02 2.44 16 45 H 0.03 1.57 6.94 -2.38 -0.02 1.55 16 46 H -0.01 -0.55 7.69 -2.39 -0.02 -0.56 16 47 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 48 H 0.04 1.32 7.59 -2.39 -0.02 1.30 16 49 H 0.02 0.63 6.07 -2.39 -0.01 0.62 16 50 H 0.05 1.94 7.49 -2.39 -0.02 1.92 16 51 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 52 H 0.06 2.01 6.53 -2.38 -0.02 2.00 16 53 H 0.07 2.45 6.99 -2.39 -0.02 2.43 16 Total: -1.00 -78.63 395.96 2.92 -75.72 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.87 Total: 12.96 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 5.83 Total: 5.15 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -4.55 Total: -110.10 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -1.26 Total: -31.99 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -78.63 2.92 -75.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035223791.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.764 kcal (2) G-P(sol) polarization free energy of solvation -78.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds