Wall clock time and date at job start Tue Mar 31 2020 21:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.48944 * 2 1 4 4 C 1.53090 * 109.47862 * 120.02204 * 2 1 3 5 5 C 1.53180 * 109.16053 * 177.59219 * 4 2 1 6 6 H 1.08995 * 109.54392 * 62.98151 * 5 4 2 7 7 C 1.50705 * 109.54186 * 183.15547 * 5 4 2 8 8 O 1.21286 * 119.99668 * 24.51073 * 7 5 4 9 9 N 1.34771 * 120.00172 * 204.50822 * 7 5 4 10 10 C 1.46935 * 120.55340 * 354.79079 * 9 7 5 11 11 C 1.53338 * 108.68828 * 125.62170 * 10 9 7 12 12 C 1.52106 * 109.44107 * 53.30651 * 11 10 9 13 13 C 1.54390 * 110.50981 * 64.09209 * 12 11 10 14 14 C 1.54452 * 102.87275 * 83.33085 * 13 12 11 15 15 N 1.47075 * 107.29886 * 21.50514 * 14 13 12 16 16 C 1.36938 * 125.63165 * 180.96719 * 15 14 13 17 17 H 1.07993 * 120.00183 * 180.02562 * 16 15 14 18 18 C 1.38812 * 119.99754 * 0.30037 * 16 15 14 19 19 N 1.31621 * 119.99793 * 359.72245 * 18 16 15 20 20 Si 1.86796 * 120.00003 * 179.72551 * 18 16 15 21 21 H 1.48501 * 109.47199 * 60.00063 * 20 18 16 22 22 H 1.48504 * 109.47219 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47050 * 300.00013 * 20 18 16 24 24 C 1.47580 * 108.74265 * 1.23182 * 15 14 13 25 25 C 1.52107 * 111.59970 * 300.69123 * 12 11 10 26 26 C 1.46931 * 120.55462 * 174.76234 * 9 7 5 27 27 C 1.53176 * 109.11036 * 303.06205 * 5 4 2 28 28 C 1.53104 * 109.15518 * 56.85273 * 27 5 4 29 29 O 1.42898 * 109.48298 * 239.96874 * 2 1 3 30 30 H 1.08998 * 109.47186 * 299.97894 * 1 2 3 31 31 H 1.09003 * 109.46928 * 59.97156 * 1 2 3 32 32 H 1.08996 * 109.47066 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.52216 * 57.69243 * 4 2 1 34 34 H 1.08992 * 109.57853 * 297.52884 * 4 2 1 35 35 H 1.09005 * 109.60279 * 5.86249 * 10 9 7 36 36 H 1.09000 * 109.60199 * 245.38600 * 10 9 7 37 37 H 1.09000 * 109.47810 * 293.31155 * 11 10 9 38 38 H 1.09007 * 109.47721 * 173.29788 * 11 10 9 39 39 H 1.09003 * 110.72805 * 324.98083 * 13 12 11 40 40 H 1.09008 * 110.73156 * 201.67969 * 13 12 11 41 41 H 1.08998 * 109.87614 * 262.08319 * 14 13 12 42 42 H 1.09000 * 109.87558 * 140.93302 * 14 13 12 43 43 H 0.97002 * 119.99750 * 179.97438 * 19 18 16 44 44 H 1.08999 * 110.37533 * 95.26079 * 24 15 14 45 45 H 1.08999 * 110.37772 * 217.60901 * 24 15 14 46 46 H 1.08998 * 109.47350 * 179.29546 * 25 12 11 47 47 H 1.09000 * 109.47546 * 299.30796 * 25 12 11 48 48 H 1.08994 * 109.59709 * 354.13262 * 26 9 7 49 49 H 1.08997 * 109.59760 * 114.60979 * 26 9 7 50 50 H 1.08999 * 109.52594 * 176.84372 * 27 5 4 51 51 H 1.08999 * 109.52980 * 297.03297 * 27 5 4 52 52 H 1.09001 * 109.48618 * 182.49497 * 28 27 5 53 53 H 1.09003 * 109.41864 * 62.50913 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0405 -0.7221 1.2496 5 6 3.5711 -0.7707 1.2122 6 1 3.9689 0.2436 1.2425 7 6 4.0799 -1.5474 2.3993 8 8 3.3685 -2.3703 2.9357 9 7 5.3255 -1.3276 2.8647 10 6 6.2376 -0.4184 2.1573 11 6 6.7398 0.6408 3.1458 12 6 7.3271 -0.0464 4.3691 13 6 8.5706 -0.8744 3.9796 14 6 9.6990 0.1801 3.9765 15 7 9.2489 1.3048 4.8105 16 6 9.9547 2.4538 5.0489 17 1 9.5355 3.2242 5.6790 18 6 11.2067 2.6307 4.4761 19 7 11.7176 1.6917 3.7082 20 14 12.1663 4.2012 4.7950 21 1 12.4155 4.3418 6.2522 22 1 13.4637 4.1435 4.0748 23 1 11.3829 5.3667 4.3121 24 6 7.9135 0.9880 5.3532 25 6 6.2988 -0.9245 5.0657 26 6 5.7938 -1.9927 4.0883 27 6 4.0195 -1.4589 -0.0807 28 6 3.4308 -0.7094 -1.2790 29 8 2.0066 -0.6742 -1.1663 30 1 -0.3633 0.5135 0.8901 31 1 -0.3633 0.5143 -0.8898 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6443 -1.7374 1.2711 34 1 1.7148 -0.1851 2.1404 35 1 5.7070 0.0679 1.3386 36 1 7.0836 -0.9820 1.7641 37 1 5.9087 1.2770 3.4502 38 1 7.5072 1.2495 2.6675 39 1 8.4481 -1.3116 2.9886 40 1 8.7672 -1.6480 4.7221 41 1 9.8824 0.5237 2.9585 42 1 10.6093 -0.2500 4.3943 43 1 12.5923 1.8154 3.3075 44 1 8.0015 0.5587 6.3512 45 1 7.2917 1.8829 5.3775 46 1 6.7583 -1.4085 5.9274 47 1 5.4615 -0.3104 5.3974 48 1 4.9707 -2.5442 4.5425 49 1 6.6055 -2.6780 3.8441 50 1 5.1078 -1.4472 -0.1410 51 1 3.6645 -2.4894 -0.0870 52 1 3.7100 -1.2204 -2.2004 53 1 3.8193 0.3089 -1.2960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035242405.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:00 Heat of formation + Delta-G solvation = -86.135331 kcal Electronic energy + Delta-G solvation = -31084.926113 eV Core-core repulsion = 27148.684798 eV Total energy + Delta-G solvation = -3936.241315 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.88406 -40.57715 -39.46969 -37.20402 -35.06897 -34.55383 -33.70337 -32.48067 -32.00631 -30.42411 -28.97079 -28.29864 -26.40891 -25.54130 -24.42216 -23.97410 -23.21152 -21.93995 -21.61165 -20.50722 -19.34093 -18.59898 -17.99733 -17.28052 -17.18997 -16.78849 -16.68067 -16.34989 -16.08627 -15.74974 -15.48743 -15.19993 -15.05010 -14.85047 -14.61869 -14.30026 -14.02034 -13.89299 -13.81803 -13.51611 -13.41281 -13.19561 -13.04908 -12.95410 -12.79169 -12.70954 -12.39794 -12.30959 -12.20373 -12.10579 -12.04383 -11.97807 -11.77941 -11.72923 -11.47616 -11.43681 -11.19918 -11.05816 -10.85737 -10.66227 -10.33916 -9.62242 -8.84206 -7.82259 -5.16411 1.46398 1.48734 1.55019 1.55508 1.97118 2.51076 2.86356 3.35558 3.37458 3.60281 3.64266 3.71765 3.75161 3.77952 3.92745 3.96729 4.10349 4.13987 4.23145 4.27649 4.32656 4.43826 4.44961 4.49547 4.52445 4.62720 4.64136 4.70063 4.72222 4.77510 4.83155 4.83983 4.84805 4.88472 4.97755 4.99426 5.04248 5.07400 5.09325 5.16125 5.19262 5.25251 5.33140 5.40787 5.44522 5.48696 5.62913 5.73531 5.84183 6.23329 6.32194 6.39831 7.12810 7.14356 7.82054 8.46759 9.27539 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017567 B = 0.002698 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.471957 B =10375.800515 C =11052.906183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.086 3.914 3 H 0.073 0.927 4 C -0.127 4.127 5 C -0.108 4.108 6 H 0.113 0.887 7 C 0.520 3.480 8 O -0.583 6.583 9 N -0.603 5.603 10 C 0.110 3.890 11 C -0.106 4.106 12 C -0.057 4.057 13 C -0.121 4.121 14 C 0.190 3.810 15 N -0.623 5.623 16 C -0.240 4.240 17 H 0.078 0.922 18 C -0.064 4.064 19 N -0.949 5.949 20 Si 0.974 3.026 21 H -0.281 1.281 22 H -0.295 1.295 23 H -0.276 1.276 24 C 0.140 3.860 25 C -0.105 4.105 26 C 0.116 3.884 27 C -0.141 4.141 28 C 0.062 3.938 29 O -0.399 6.399 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.014 0.986 42 H -0.004 1.004 43 H 0.246 0.754 44 H 0.018 0.982 45 H 0.037 0.963 46 H 0.082 0.918 47 H 0.065 0.935 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.094 0.906 51 H 0.061 0.939 52 H 0.111 0.889 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.021 -5.139 -8.550 21.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.029 3.971 3 H 0.091 0.909 4 C -0.165 4.165 5 C -0.129 4.129 6 H 0.131 0.869 7 C 0.309 3.691 8 O -0.464 6.464 9 N -0.335 5.335 10 C -0.011 4.011 11 C -0.145 4.145 12 C -0.058 4.058 13 C -0.159 4.159 14 C 0.065 3.935 15 N -0.350 5.350 16 C -0.369 4.369 17 H 0.096 0.904 18 C -0.257 4.257 19 N -0.599 5.599 20 Si 0.802 3.198 21 H -0.207 1.207 22 H -0.221 1.221 23 H -0.202 1.202 24 C 0.015 3.985 25 C -0.144 4.144 26 C -0.006 4.006 27 C -0.180 4.180 28 C -0.014 4.014 29 O -0.318 6.318 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.127 0.873 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.032 0.968 42 H 0.015 0.985 43 H 0.055 0.945 44 H 0.036 0.964 45 H 0.056 0.944 46 H 0.100 0.900 47 H 0.084 0.916 48 H 0.101 0.899 49 H 0.094 0.906 50 H 0.113 0.887 51 H 0.080 0.920 52 H 0.129 0.871 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.312 -5.558 -8.446 21.798 hybrid contribution 1.482 0.853 0.755 1.869 sum -17.830 -4.705 -7.691 19.980 Atomic orbital electron populations 1.21778 0.92182 1.02816 1.03358 1.22203 0.95935 0.95179 0.83828 0.90922 1.22041 0.93081 1.02138 0.99262 1.21451 0.97556 1.00849 0.93059 0.86871 1.20972 0.80637 0.82430 0.85025 1.90652 1.57468 1.36818 1.61422 1.48211 1.13217 1.45486 1.26559 1.21994 0.93492 0.90904 0.94755 1.21542 1.00039 0.97448 0.95431 1.20966 0.94231 0.95064 0.95540 1.22791 0.94475 0.97035 1.01592 1.20875 0.92951 0.86270 0.93387 1.44780 1.16613 1.17212 1.56347 1.19376 0.98388 0.94541 1.24587 0.90415 1.25566 0.98654 1.01257 1.00244 1.70176 1.17895 1.34492 1.37305 0.85225 0.77611 0.79512 0.77421 1.20729 1.22146 1.20212 1.21719 0.85874 0.96112 0.94783 1.21637 0.97908 0.96918 0.97937 1.21596 0.99674 0.94702 0.84653 1.22172 1.02512 1.00101 0.93166 1.22703 0.80106 1.00624 0.97991 1.87922 1.22107 1.78371 1.43434 0.89736 0.91229 0.92581 0.91991 0.90530 0.87272 0.90206 0.91414 0.91927 0.90053 0.91633 0.96753 0.98543 0.94521 0.96409 0.94434 0.89983 0.91591 0.89947 0.90588 0.88707 0.91979 0.87115 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.56 71.98 0.69 -1.25 16 2 C 0.09 1.35 3.26 30.62 0.10 1.45 16 3 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 4 C -0.13 -2.36 4.29 30.68 0.13 -2.23 16 5 C -0.11 -1.93 1.74 -11.42 -0.02 -1.95 16 6 H 0.11 1.63 6.53 -2.39 -0.02 1.61 16 7 C 0.52 12.59 6.81 87.66 0.60 13.18 16 8 O -0.58 -18.49 15.46 -3.05 -0.05 -18.54 16 9 N -0.60 -13.56 2.96 -818.30 -2.42 -15.98 16 10 C 0.11 2.25 5.56 86.41 0.48 2.73 16 11 C -0.11 -2.84 4.87 30.41 0.15 -2.69 16 12 C -0.06 -1.70 0.55 -51.84 -0.03 -1.73 16 13 C -0.12 -4.02 4.92 31.56 0.16 -3.87 16 14 C 0.19 8.97 4.99 86.76 0.43 9.40 16 15 N -0.62 -30.88 3.38 -692.32 -2.34 -33.23 16 16 C -0.24 -13.20 10.28 84.03 0.86 -12.34 16 17 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 18 C -0.06 -3.60 5.49 84.86 0.47 -3.13 16 19 N -0.95 -56.14 10.31 21.65 0.22 -55.92 16 20 Si 0.97 45.19 29.55 68.60 2.03 47.22 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 C 0.14 5.44 6.16 86.63 0.53 5.97 16 25 C -0.11 -2.59 4.84 30.41 0.15 -2.44 16 26 C 0.12 2.71 6.15 86.41 0.53 3.24 16 27 C -0.14 -2.19 5.23 30.69 0.16 -2.03 16 28 C 0.06 0.84 6.84 72.02 0.49 1.34 16 29 O -0.40 -7.33 10.41 -148.98 -1.55 -8.88 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 1.44 7.77 -2.39 -0.02 1.42 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.11 1.66 5.01 -2.38 -0.01 1.64 16 36 H 0.08 1.62 6.55 -2.39 -0.02 1.60 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 38 H 0.06 2.05 7.82 -2.38 -0.02 2.03 16 39 H 0.08 2.36 6.17 -2.39 -0.01 2.34 16 40 H 0.06 2.08 7.98 -2.38 -0.02 2.06 16 41 H 0.01 0.75 7.38 -2.39 -0.02 0.73 16 42 H 0.00 -0.20 7.51 -2.39 -0.02 -0.22 16 43 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 44 H 0.02 0.70 8.00 -2.39 -0.02 0.69 16 45 H 0.04 1.44 8.03 -2.39 -0.02 1.42 16 46 H 0.08 1.94 8.09 -2.39 -0.02 1.92 16 47 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.08 2.06 7.02 -2.39 -0.02 2.05 16 49 H 0.08 1.68 7.62 -2.39 -0.02 1.66 16 50 H 0.09 1.21 7.29 -2.39 -0.02 1.19 16 51 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 52 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 53 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -70.14 391.25 2.64 -67.50 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.87 Total: 14.18 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 5.88 Total: 3.64 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -4.54 Total: -105.12 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -1.60 Total: -27.42 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -70.14 2.64 -67.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035242405.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.634 kcal (2) G-P(sol) polarization free energy of solvation -70.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds