Wall clock time and date at job start Tue Mar 31 2020 21:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.48376 * 2 1 4 4 C 1.53103 * 109.48667 * 240.05516 * 2 1 3 5 5 C 1.53182 * 109.16200 * 182.49532 * 4 2 1 6 6 H 1.08997 * 109.54114 * 296.93645 * 5 4 2 7 7 C 1.50699 * 109.54426 * 176.75747 * 5 4 2 8 8 O 1.21283 * 119.99898 * 275.02544 * 7 5 4 9 9 N 1.34771 * 119.99914 * 95.02787 * 7 5 4 10 10 C 1.46938 * 120.56079 * 174.56458 * 9 7 5 11 11 C 1.53320 * 108.70081 * 125.78814 * 10 9 7 12 12 C 1.52273 * 109.41140 * 53.52091 * 11 10 9 13 13 C 1.54537 * 110.15319 * 62.82367 * 12 11 10 14 14 C 1.55023 * 101.55779 * 153.25743 * 13 12 11 15 15 N 1.47520 * 104.88039 * 323.66402 * 14 13 12 16 16 C 1.36938 * 125.64172 * 203.97919 * 15 14 13 17 17 H 1.08002 * 119.99590 * 179.97438 * 16 15 14 18 18 C 1.38809 * 120.00376 * 359.97438 * 16 15 14 19 19 N 1.31624 * 119.99732 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00305 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47349 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47280 * 119.99805 * 20 18 16 23 23 H 1.48501 * 109.47515 * 239.99965 * 20 18 16 24 24 C 1.47184 * 108.69720 * 23.96267 * 15 14 13 25 25 C 1.52277 * 111.27519 * 300.35005 * 12 11 10 26 26 C 1.46924 * 120.56469 * 354.59162 * 9 7 5 27 27 C 1.53180 * 109.10447 * 56.84476 * 5 4 2 28 28 C 1.53084 * 109.16570 * 303.06540 * 27 5 4 29 29 O 1.42902 * 109.48204 * 120.02299 * 2 1 3 30 30 H 1.08997 * 109.47476 * 299.98077 * 1 2 3 31 31 H 1.09004 * 109.47054 * 59.97908 * 1 2 3 32 32 H 1.09005 * 109.47201 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.59827 * 62.54505 * 4 2 1 34 34 H 1.09003 * 109.45118 * 302.35815 * 4 2 1 35 35 H 1.08997 * 109.59829 * 6.02370 * 10 9 7 36 36 H 1.08999 * 109.72646 * 245.62853 * 10 9 7 37 37 H 1.09004 * 109.47681 * 293.54566 * 11 10 9 38 38 H 1.08992 * 109.48102 * 173.51092 * 11 10 9 39 39 H 1.09002 * 111.01260 * 271.33318 * 13 12 11 40 40 H 1.08999 * 111.01382 * 35.17959 * 13 12 11 41 41 H 1.09003 * 110.35729 * 82.49002 * 14 13 12 42 42 H 1.09010 * 110.35217 * 204.77679 * 14 13 12 43 43 H 0.97001 * 120.00052 * 179.97438 * 19 18 16 44 44 H 1.08993 * 109.90963 * 239.17018 * 24 15 14 45 45 H 1.09002 * 109.90659 * 117.90608 * 24 15 14 46 46 H 1.09000 * 109.48019 * 179.62567 * 25 12 11 47 47 H 1.09001 * 109.47904 * 299.66282 * 25 12 11 48 48 H 1.09000 * 109.59459 * 353.97043 * 26 9 7 49 49 H 1.09001 * 109.60123 * 114.43572 * 26 9 7 50 50 H 1.09000 * 109.52408 * 62.97683 * 27 5 4 51 51 H 1.09005 * 109.51879 * 183.15653 * 27 5 4 52 52 H 1.09005 * 109.48328 * 177.59570 * 28 27 5 53 53 H 1.09001 * 109.48088 * 297.61751 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0407 -0.7205 -1.2507 5 6 3.5712 -0.7709 -1.2121 6 1 3.9703 0.2429 -1.2416 7 6 4.0800 -1.5478 -2.3989 8 8 4.1551 -2.7571 -2.3452 9 7 4.4518 -0.8987 -3.5200 10 6 5.0602 -1.6301 -4.6398 11 6 4.2596 -1.3338 -5.9134 12 6 4.1548 0.1730 -6.1061 13 6 5.5602 0.7830 -6.3084 14 6 5.2325 2.0485 -7.1418 15 7 4.1276 1.6413 -8.0303 16 6 3.8094 2.2256 -9.2272 17 1 2.9779 1.8519 -9.8063 18 6 4.5554 3.2982 -9.6961 19 7 5.5685 3.7539 -8.9900 20 14 4.1218 4.0947 -11.3290 21 1 2.9507 3.4010 -11.9227 22 1 3.7911 5.5257 -11.1095 23 1 5.2793 3.9904 -12.2536 24 6 3.4242 0.5030 -7.4173 25 6 3.4609 0.8345 -4.9230 26 6 4.2561 0.5522 -3.6430 27 6 4.0176 -1.4600 0.0811 28 6 3.4307 -0.7091 1.2791 29 8 2.0065 -0.6741 1.1664 30 1 -0.3634 0.5135 0.8901 31 1 -0.3633 0.5142 -0.8898 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7163 -0.1818 -2.1410 34 1 1.6432 -1.7352 -1.2728 35 1 5.0364 -2.7001 -4.4336 36 1 6.0924 -1.3063 -4.7732 37 1 3.2601 -1.7589 -5.8215 38 1 4.7653 -1.7759 -6.7717 39 1 6.0115 1.0503 -5.3529 40 1 6.2045 0.1036 -6.8663 41 1 4.9137 2.8607 -6.4885 42 1 6.1000 2.3511 -7.7286 43 1 6.0901 4.5031 -9.3178 44 1 3.4560 -0.3568 -8.0864 45 1 2.3898 0.7752 -7.2075 46 1 3.4075 1.9106 -5.0880 47 1 2.4531 0.4318 -4.8211 48 1 3.7021 0.9208 -2.7797 49 1 5.2251 1.0485 -3.6975 50 1 3.6614 -2.4901 0.0867 51 1 5.1059 -1.4497 0.1423 52 1 3.7100 -1.2199 2.2007 53 1 3.8194 0.3091 1.2958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035242406.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:05 Heat of formation + Delta-G solvation = -84.381076 kcal Electronic energy + Delta-G solvation = -31091.033287 eV Core-core repulsion = 27154.868042 eV Total energy + Delta-G solvation = -3936.165245 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.89218 -40.58451 -39.47394 -37.21339 -35.05313 -34.57759 -33.67108 -32.53447 -32.07734 -30.36219 -29.03964 -28.22755 -26.36867 -25.54113 -24.50176 -24.10427 -23.11249 -21.95708 -21.61601 -20.50567 -19.26895 -18.59783 -18.06542 -17.30669 -17.21767 -16.90007 -16.45051 -16.41275 -16.20781 -15.69309 -15.62285 -15.27821 -14.97519 -14.78878 -14.43940 -14.24805 -14.16740 -14.03262 -13.71967 -13.52464 -13.46265 -13.17827 -13.03646 -12.91393 -12.82093 -12.77720 -12.42884 -12.34195 -12.20936 -12.16330 -12.00940 -11.94364 -11.73763 -11.67996 -11.57011 -11.42110 -11.16452 -11.00860 -10.86732 -10.71824 -10.32598 -9.62885 -8.84638 -7.76004 -5.19042 1.46511 1.46960 1.53914 1.57059 1.96284 2.49965 2.86612 3.32821 3.37083 3.63142 3.68222 3.69316 3.73636 3.76320 3.89991 3.96571 4.08399 4.13374 4.24261 4.28747 4.32967 4.42015 4.44580 4.51390 4.52267 4.60766 4.66314 4.68632 4.73673 4.76186 4.77769 4.80492 4.84796 4.86128 4.97436 4.98529 5.03139 5.06371 5.09808 5.12317 5.23600 5.25772 5.33520 5.39339 5.43942 5.48606 5.60238 5.72102 5.87688 6.32810 6.34326 6.39929 7.12593 7.14003 7.81592 8.45430 9.25482 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020028 B = 0.002615 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.676861 B =10706.894837 C =11312.830976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.088 3.912 3 H 0.079 0.921 4 C -0.134 4.134 5 C -0.107 4.107 6 H 0.118 0.882 7 C 0.520 3.480 8 O -0.584 6.584 9 N -0.604 5.604 10 C 0.117 3.883 11 C -0.106 4.106 12 C -0.057 4.057 13 C -0.119 4.119 14 C 0.158 3.842 15 N -0.625 5.625 16 C -0.236 4.236 17 H 0.075 0.925 18 C -0.065 4.065 19 N -0.946 5.946 20 Si 0.976 3.024 21 H -0.270 1.270 22 H -0.291 1.291 23 H -0.292 1.292 24 C 0.142 3.858 25 C -0.109 4.109 26 C 0.109 3.891 27 C -0.136 4.136 28 C 0.064 3.936 29 O -0.400 6.400 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.057 0.943 41 H -0.007 1.007 42 H 0.065 0.935 43 H 0.246 0.754 44 H 0.018 0.982 45 H 0.019 0.981 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.112 0.888 49 H 0.083 0.917 50 H 0.059 0.941 51 H 0.082 0.918 52 H 0.108 0.892 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.093 -6.928 20.749 22.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.030 3.970 3 H 0.096 0.904 4 C -0.172 4.172 5 C -0.128 4.128 6 H 0.136 0.864 7 C 0.309 3.691 8 O -0.465 6.465 9 N -0.335 5.335 10 C -0.006 4.006 11 C -0.144 4.144 12 C -0.057 4.057 13 C -0.158 4.158 14 C 0.034 3.966 15 N -0.351 5.351 16 C -0.365 4.365 17 H 0.093 0.907 18 C -0.258 4.258 19 N -0.596 5.596 20 Si 0.805 3.195 21 H -0.195 1.195 22 H -0.219 1.219 23 H -0.219 1.219 24 C 0.017 3.983 25 C -0.147 4.147 26 C -0.013 4.013 27 C -0.175 4.175 28 C -0.012 4.012 29 O -0.319 6.319 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.011 0.989 42 H 0.083 0.917 43 H 0.056 0.944 44 H 0.036 0.964 45 H 0.037 0.963 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.130 0.870 49 H 0.101 0.899 50 H 0.078 0.922 51 H 0.101 0.899 52 H 0.126 0.874 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.132 -7.491 20.760 22.453 hybrid contribution 0.094 0.550 -1.714 1.802 sum -4.038 -6.941 19.046 20.670 Atomic orbital electron populations 1.21795 0.92289 1.02754 1.03475 1.22193 0.95788 0.95365 0.83634 0.90357 1.22166 0.92554 1.02208 1.00295 1.21475 0.97652 1.01142 0.92544 0.86375 1.21024 0.76181 0.87606 0.84272 1.90654 1.56409 1.16042 1.83366 1.48222 1.60493 1.09311 1.15502 1.21567 0.96709 0.97453 0.84852 1.21681 1.00764 0.94341 0.97648 1.20890 0.95737 0.95088 0.94017 1.22923 0.95579 0.97404 0.99865 1.21700 0.91944 0.92413 0.90574 1.44859 1.34366 1.35466 1.20416 1.19444 1.11130 1.10294 0.95666 0.90696 1.25553 0.98473 0.99580 1.02198 1.70065 1.22077 1.28349 1.39122 0.85043 0.77316 0.77818 0.79358 1.19452 1.21852 1.21918 1.21433 0.94481 0.89492 0.92903 1.21673 0.98946 1.00834 0.93263 1.22020 1.01579 0.79005 0.98713 1.22052 1.01823 1.00129 0.93458 1.22687 0.80097 1.00551 0.97907 1.87928 1.22081 1.78452 1.43481 0.91259 0.89605 0.92723 0.89278 0.92367 0.90109 0.90336 0.91953 0.90691 0.89609 0.92456 0.98944 0.91701 0.94418 0.96359 0.96339 0.91293 0.91260 0.86989 0.89910 0.92231 0.89897 0.87403 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.56 71.98 0.69 -1.20 16 2 C 0.09 1.27 3.26 30.63 0.10 1.37 16 3 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.13 -2.21 4.63 30.69 0.14 -2.07 16 5 C -0.11 -1.82 1.80 -11.42 -0.02 -1.84 16 6 H 0.12 1.42 6.17 -2.39 -0.01 1.41 16 7 C 0.52 12.40 6.70 87.66 0.59 12.98 16 8 O -0.58 -18.63 15.62 -3.04 -0.05 -18.68 16 9 N -0.60 -13.37 2.96 -818.40 -2.42 -15.80 16 10 C 0.12 2.80 6.15 86.40 0.53 3.33 16 11 C -0.11 -2.78 4.72 30.46 0.14 -2.63 16 12 C -0.06 -1.72 0.55 -51.91 -0.03 -1.75 16 13 C -0.12 -4.04 4.92 31.81 0.16 -3.88 16 14 C 0.16 7.41 5.56 86.88 0.48 7.90 16 15 N -0.63 -31.42 3.40 -692.36 -2.36 -33.78 16 16 C -0.24 -13.15 10.28 84.03 0.86 -12.29 16 17 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 18 C -0.07 -3.67 5.49 84.86 0.47 -3.21 16 19 N -0.95 -55.38 10.09 21.65 0.22 -55.16 16 20 Si 0.98 45.37 29.55 68.60 2.03 47.40 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 24 C 0.14 5.68 6.42 86.48 0.56 6.24 16 25 C -0.11 -2.75 4.74 30.46 0.14 -2.60 16 26 C 0.11 2.06 5.83 86.40 0.50 2.56 16 27 C -0.14 -2.29 5.13 30.68 0.16 -2.14 16 28 C 0.06 0.86 6.84 72.01 0.49 1.35 16 29 O -0.40 -7.15 10.41 -148.98 -1.55 -8.70 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.09 1.30 8.01 -2.39 -0.02 1.28 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 2.11 6.99 -2.39 -0.02 2.09 16 36 H 0.08 1.77 7.56 -2.39 -0.02 1.75 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 2.00 8.11 -2.39 -0.02 1.98 16 39 H 0.09 2.42 6.08 -2.39 -0.01 2.41 16 40 H 0.06 1.97 8.00 -2.39 -0.02 1.96 16 41 H -0.01 -0.37 7.75 -2.39 -0.02 -0.38 16 42 H 0.06 3.55 5.89 -2.38 -0.01 3.54 16 43 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 44 H 0.02 0.75 7.78 -2.39 -0.02 0.73 16 45 H 0.02 0.75 7.83 -2.39 -0.02 0.73 16 46 H 0.07 1.99 7.47 -2.39 -0.02 1.98 16 47 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.11 1.49 5.41 -2.39 -0.01 1.48 16 49 H 0.08 1.52 6.47 -2.39 -0.02 1.51 16 50 H 0.06 1.32 7.76 -2.39 -0.02 1.30 16 51 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 52 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 53 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -70.33 390.80 2.71 -67.62 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.88 Total: 14.98 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 5.97 Total: 2.11 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -4.56 Total: -104.74 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -1.60 Total: -27.37 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -70.33 2.71 -67.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035242406.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.759 kcal (2) G-P(sol) polarization free energy of solvation -70.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds