Wall clock time and date at job start Tue Mar 31 2020 21:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47924 * 2 1 4 4 C 1.53090 * 109.47672 * 120.02213 * 2 1 3 5 5 C 1.53182 * 109.16032 * 177.60265 * 4 2 1 6 6 H 1.08998 * 109.54307 * 183.05824 * 5 4 2 7 7 C 1.50697 * 109.54245 * 62.88476 * 5 4 2 8 8 O 1.21288 * 120.00196 * 274.50474 * 7 5 4 9 9 N 1.34779 * 120.00048 * 94.50834 * 7 5 4 10 10 C 1.46938 * 120.57850 * 174.42288 * 9 7 5 11 11 C 1.53325 * 108.69584 * 234.43142 * 10 9 7 12 12 C 1.52099 * 109.49796 * 306.71971 * 11 10 9 13 13 C 1.54398 * 110.51055 * 182.57593 * 12 11 10 14 14 C 1.54450 * 102.87549 * 152.62291 * 13 12 11 15 15 N 1.47087 * 107.29550 * 338.49401 * 14 13 12 16 16 C 1.36940 * 125.62785 * 179.01449 * 15 14 13 17 17 H 1.07996 * 120.00412 * 185.06724 * 16 15 14 18 18 C 1.38816 * 119.99864 * 5.05757 * 16 15 14 19 19 N 1.31614 * 120.00173 * 354.94015 * 18 16 15 20 20 Si 1.86799 * 119.99759 * 174.93665 * 18 16 15 21 21 H 1.48499 * 109.47156 * 95.00592 * 20 18 16 22 22 H 1.48501 * 109.47048 * 215.00073 * 20 18 16 23 23 H 1.48499 * 109.47198 * 335.00506 * 20 18 16 24 24 C 1.47571 * 108.74422 * 359.01372 * 15 14 13 25 25 C 1.52104 * 111.61548 * 59.15798 * 12 11 10 26 26 C 1.46935 * 120.58096 * 354.44559 * 9 7 5 27 27 C 1.53175 * 109.11074 * 302.97677 * 5 4 2 28 28 C 1.53282 * 109.06516 * 56.93454 * 27 5 4 29 29 O 1.42900 * 109.48647 * 239.96812 * 2 1 3 30 30 H 1.08999 * 109.47285 * 299.97983 * 1 2 3 31 31 H 1.08997 * 109.47200 * 59.97877 * 1 2 3 32 32 H 1.09000 * 109.47419 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.52441 * 57.69823 * 4 2 1 34 34 H 1.08997 * 109.57628 * 297.53585 * 4 2 1 35 35 H 1.09003 * 109.59945 * 114.66555 * 10 9 7 36 36 H 1.09000 * 109.73229 * 354.27344 * 10 9 7 37 37 H 1.09002 * 109.46991 * 66.73258 * 11 10 9 38 38 H 1.09005 * 109.46341 * 186.71283 * 11 10 9 39 39 H 1.09002 * 110.72798 * 270.96795 * 13 12 11 40 40 H 1.08996 * 110.72976 * 34.27119 * 13 12 11 41 41 H 1.08998 * 109.88374 * 97.92005 * 14 13 12 42 42 H 1.09001 * 109.87766 * 218.92085 * 14 13 12 43 43 H 0.96999 * 120.00182 * 179.97438 * 19 18 16 44 44 H 1.09000 * 110.37204 * 264.49347 * 24 15 14 45 45 H 1.08994 * 110.37585 * 142.15165 * 24 15 14 46 46 H 1.09009 * 109.46515 * 180.82569 * 25 12 11 47 47 H 1.09006 * 109.46261 * 60.84013 * 25 12 11 48 48 H 1.08996 * 109.60110 * 245.32445 * 26 9 7 49 49 H 1.09005 * 109.59929 * 5.79720 * 26 9 7 50 50 H 1.08992 * 109.52416 * 176.93200 * 27 5 4 51 51 H 1.09007 * 109.51675 * 297.11624 * 27 5 4 52 52 H 1.09003 * 109.45707 * 182.44843 * 28 27 5 53 53 H 1.08998 * 109.46344 * 62.45476 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 1.2497 5 6 3.5711 -0.7705 1.2124 6 1 3.9392 -1.3308 2.0719 7 6 4.1209 0.6320 1.2520 8 8 4.2411 1.2655 0.2247 9 7 4.4790 1.1825 2.4289 10 6 5.1288 2.4998 2.4711 11 6 6.4443 2.3742 3.2487 12 6 6.1741 1.7398 4.6044 13 6 7.4742 1.6610 5.4335 14 6 6.9573 1.6989 6.8885 15 7 5.6148 2.2991 6.8601 16 6 4.8052 2.4945 7.9471 17 1 3.8013 2.8692 7.8125 18 6 5.2748 2.2106 9.2222 19 7 6.4602 1.6607 9.3797 20 14 4.2243 2.6090 10.7146 21 1 3.4546 1.4036 11.1143 22 1 5.0994 3.0322 11.8372 23 1 3.2837 3.7080 10.3787 24 6 5.2843 2.6562 5.4669 25 6 5.5476 0.3610 4.4629 26 6 4.2271 0.4757 3.6922 27 6 4.0197 -1.4604 -0.0795 28 6 3.4309 -0.7091 -1.2788 29 8 2.0067 -0.6742 -1.1663 30 1 -0.3634 0.5135 0.8901 31 1 -0.3633 0.5141 -0.8898 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6444 -1.7373 1.2710 34 1 1.7146 -0.1851 2.1404 35 1 4.4749 3.2141 2.9715 36 1 5.3348 2.8411 1.4566 37 1 7.1398 1.7501 2.6876 38 1 6.8780 3.3641 3.3908 39 1 8.0020 0.7281 5.2357 40 1 8.1147 2.5189 5.2291 41 1 6.9022 0.6866 7.2888 42 1 7.6236 2.3045 7.5028 43 1 6.7885 1.4627 10.2707 44 1 5.5211 3.7031 5.2771 45 1 4.2310 2.4618 5.2650 46 1 5.3559 -0.0541 5.4525 47 1 6.2294 -0.2938 3.9202 48 1 3.5043 1.0349 4.2862 49 1 3.8384 -0.5209 3.4824 50 1 5.1080 -1.4501 -0.1390 51 1 3.6635 -2.4906 -0.0848 52 1 3.7104 -1.2201 -2.2002 53 1 3.8193 0.3092 -1.2958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035242407.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:09 Heat of formation + Delta-G solvation = -76.655008 kcal Electronic energy + Delta-G solvation = -31534.103008 eV Core-core repulsion = 27598.272790 eV Total energy + Delta-G solvation = -3935.830218 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.05711 -40.69655 -39.08518 -37.13001 -35.07792 -34.56510 -33.63118 -32.54065 -31.98406 -30.63530 -28.84602 -27.75141 -26.67574 -25.53351 -24.49656 -24.05032 -23.12872 -22.23698 -21.71468 -20.40723 -18.96138 -18.83915 -17.99880 -17.33627 -16.93698 -16.80355 -16.62119 -16.40837 -16.21517 -15.71914 -15.49239 -15.22668 -14.98307 -14.82265 -14.46156 -14.10084 -13.88092 -13.84067 -13.70278 -13.41658 -13.35308 -13.29667 -13.03561 -12.93299 -12.89512 -12.80155 -12.75630 -12.43501 -12.23062 -12.14184 -12.02047 -11.98983 -11.74631 -11.71808 -11.52160 -11.44976 -11.12984 -11.02295 -10.65452 -10.64510 -9.95587 -9.59664 -8.83585 -7.82880 -5.16277 1.46529 1.47895 1.56762 1.57335 1.98701 2.51205 2.91354 3.35834 3.41034 3.60194 3.67034 3.72509 3.75369 3.81372 3.93034 3.99977 4.07722 4.16081 4.29688 4.29936 4.34643 4.42610 4.44320 4.57321 4.63475 4.67329 4.69065 4.72588 4.72726 4.78111 4.81351 4.83504 4.87159 4.91217 4.94829 5.06041 5.07052 5.08330 5.13137 5.14545 5.23329 5.26607 5.31247 5.37898 5.45017 5.49777 5.64631 5.72951 5.82172 6.23173 6.36288 6.43033 7.13996 7.17072 7.82288 8.47526 9.27693 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018176 B = 0.002920 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.124488 B = 9587.737724 C =10396.826133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.079 3.921 3 H 0.039 0.961 4 C -0.134 4.134 5 C -0.114 4.114 6 H 0.118 0.882 7 C 0.518 3.482 8 O -0.570 6.570 9 N -0.601 5.601 10 C 0.114 3.886 11 C -0.104 4.104 12 C -0.060 4.060 13 C -0.124 4.124 14 C 0.189 3.811 15 N -0.622 5.622 16 C -0.236 4.236 17 H 0.081 0.919 18 C -0.064 4.064 19 N -0.950 5.950 20 Si 0.972 3.028 21 H -0.286 1.286 22 H -0.298 1.298 23 H -0.270 1.270 24 C 0.144 3.856 25 C -0.106 4.106 26 C 0.109 3.891 27 C -0.131 4.131 28 C 0.037 3.963 29 O -0.396 6.396 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.008 0.992 42 H 0.000 1.000 43 H 0.245 0.755 44 H 0.014 0.986 45 H 0.044 0.956 46 H 0.060 0.940 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.111 0.889 50 H 0.077 0.923 51 H 0.092 0.908 52 H 0.096 0.904 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.922 -6.656 -19.105 21.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.022 3.978 3 H 0.057 0.943 4 C -0.172 4.172 5 C -0.135 4.135 6 H 0.135 0.865 7 C 0.308 3.692 8 O -0.450 6.450 9 N -0.333 5.333 10 C -0.009 4.009 11 C -0.142 4.142 12 C -0.061 4.061 13 C -0.162 4.162 14 C 0.064 3.936 15 N -0.348 5.348 16 C -0.366 4.366 17 H 0.098 0.902 18 C -0.258 4.258 19 N -0.599 5.599 20 Si 0.801 3.199 21 H -0.213 1.213 22 H -0.225 1.225 23 H -0.195 1.195 24 C 0.019 3.981 25 C -0.144 4.144 26 C -0.013 4.013 27 C -0.169 4.169 28 C -0.039 4.039 29 O -0.316 6.316 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.026 0.974 42 H 0.019 0.981 43 H 0.054 0.946 44 H 0.032 0.968 45 H 0.062 0.938 46 H 0.079 0.921 47 H 0.095 0.905 48 H 0.086 0.914 49 H 0.129 0.871 50 H 0.096 0.904 51 H 0.111 0.889 52 H 0.114 0.886 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.986 -6.404 -19.547 21.423 hybrid contribution 0.171 0.569 1.735 1.834 sum -5.815 -5.835 -17.812 19.625 Atomic orbital electron populations 1.21769 0.91868 1.03383 1.02858 1.22146 0.95827 0.94601 0.85246 0.94275 1.22158 0.92448 1.03707 0.98871 1.21527 0.97567 0.92518 1.01843 0.86451 1.21055 0.76635 0.89079 0.82403 1.90542 1.56650 1.64554 1.33290 1.48238 1.58964 1.19713 1.06399 1.21587 0.93759 0.84109 1.01396 1.21640 0.96969 1.01726 0.93898 1.20962 0.95206 0.95765 0.94134 1.22747 0.96719 1.01762 0.94942 1.20866 0.85387 0.95108 0.92266 1.44775 1.15978 1.71330 1.02737 1.19415 0.95343 1.36516 0.85292 0.90152 1.25579 0.98283 1.01851 1.00040 1.70191 1.19917 1.48860 1.20939 0.85159 0.77570 0.77938 0.79275 1.21324 1.22459 1.19467 1.21704 0.97243 0.95383 0.83746 1.21560 0.96797 0.95915 1.00176 1.21951 0.97272 0.98470 0.83572 1.22031 1.01520 1.00177 0.93139 1.23107 0.80383 1.02201 0.98239 1.87833 1.22108 1.77917 1.43724 0.89947 0.92337 0.91062 0.88203 0.89735 0.91574 0.89529 0.90781 0.90140 0.90406 0.91550 0.97387 0.98132 0.94594 0.96777 0.93814 0.92105 0.90485 0.91370 0.87102 0.90402 0.88920 0.88634 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.56 71.98 0.69 -1.62 16 2 C 0.08 1.64 2.98 30.63 0.09 1.73 16 3 H 0.04 1.00 6.67 -2.39 -0.02 0.99 16 4 C -0.13 -2.19 4.91 30.69 0.15 -2.04 16 5 C -0.11 -1.98 2.32 -11.42 -0.03 -2.00 16 6 H 0.12 1.61 5.98 -2.39 -0.01 1.59 16 7 C 0.52 11.99 6.10 87.66 0.53 12.52 16 8 O -0.57 -16.43 11.78 -3.06 -0.04 -16.47 16 9 N -0.60 -13.60 2.96 -818.32 -2.42 -16.02 16 10 C 0.11 2.70 6.15 86.40 0.53 3.23 16 11 C -0.10 -2.49 4.83 30.41 0.15 -2.34 16 12 C -0.06 -1.77 0.54 -51.92 -0.03 -1.80 16 13 C -0.12 -4.23 5.89 31.56 0.19 -4.04 16 14 C 0.19 9.01 5.01 86.76 0.44 9.44 16 15 N -0.62 -30.46 3.39 -692.76 -2.35 -32.81 16 16 C -0.24 -12.85 10.27 84.03 0.86 -11.99 16 17 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 18 C -0.06 -3.61 5.48 84.86 0.47 -3.14 16 19 N -0.95 -56.38 10.34 21.65 0.22 -56.16 16 20 Si 0.97 45.04 29.56 68.60 2.03 47.06 16 21 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 22 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 C 0.14 5.41 5.23 86.55 0.45 5.86 16 25 C -0.11 -2.81 4.83 30.41 0.15 -2.66 16 26 C 0.11 2.38 5.99 86.41 0.52 2.90 16 27 C -0.13 -2.22 5.57 30.75 0.17 -2.05 16 28 C 0.04 0.78 6.54 72.08 0.47 1.25 16 29 O -0.40 -9.31 10.41 -148.98 -1.55 -10.87 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.61 7.65 -2.39 -0.02 1.59 16 36 H 0.09 2.12 7.04 -2.39 -0.02 2.11 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.08 1.88 8.09 -2.38 -0.02 1.86 16 39 H 0.08 2.38 8.01 -2.39 -0.02 2.36 16 40 H 0.07 2.15 8.00 -2.39 -0.02 2.14 16 41 H 0.01 0.42 7.53 -2.39 -0.02 0.40 16 42 H 0.00 0.02 7.37 -2.39 -0.02 0.01 16 43 H 0.24 14.21 8.31 -92.71 -0.77 13.44 16 44 H 0.01 0.55 7.97 -2.39 -0.02 0.53 16 45 H 0.04 1.59 6.21 -2.39 -0.01 1.57 16 46 H 0.06 1.99 7.84 -2.38 -0.02 1.97 16 47 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 48 H 0.07 1.66 6.59 -2.39 -0.02 1.64 16 49 H 0.11 1.81 5.35 -2.38 -0.01 1.79 16 50 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 52 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 53 H 0.07 1.91 5.12 -2.39 -0.01 1.90 16 Total: -1.00 -68.04 384.94 2.58 -65.46 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.88 Total: 16.55 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 5.80 Total: 3.25 kcal Atomic # 7 Polarization: -100.44 SS G_CDS: -4.54 Total: -104.99 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -1.59 Total: -27.34 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -68.04 2.58 -65.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035242407.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.197 kcal (2) G-P(sol) polarization free energy of solvation -68.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds