Wall clock time and date at job start Tue Mar 31 2020 20:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.86944 * 2 1 4 4 C 1.54098 * 109.88054 * 121.16242 * 2 1 3 5 5 C 1.54810 * 104.18696 * 121.45494 * 4 2 1 6 6 C 1.54993 * 102.09471 * 20.87989 * 5 4 2 7 7 H 1.08995 * 110.75176 * 81.54187 * 6 5 4 8 8 C 1.53000 * 110.61814 * 204.47768 * 6 5 4 9 9 C 1.53004 * 109.46770 * 180.52252 * 8 6 5 10 10 C 1.50703 * 109.46945 * 180.02562 * 9 8 6 11 11 O 1.21280 * 119.99856 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00188 * 180.02562 * 10 9 8 13 13 C 1.46883 * 120.49633 * 179.97438 * 12 10 9 14 14 C 1.53326 * 108.76482 * 235.58716 * 13 12 10 15 15 C 1.52662 * 109.16671 * 307.60257 * 14 13 12 16 16 C 1.53496 * 113.60856 * 285.91700 * 15 14 13 17 17 N 1.47666 * 85.98981 * 269.03040 * 16 15 14 18 18 C 1.36941 * 134.45839 * 155.67285 * 17 16 15 19 19 H 1.07999 * 119.99726 * 180.02562 * 18 17 16 20 20 C 1.38812 * 119.99788 * 0.02562 * 18 17 16 21 21 N 1.31618 * 120.00183 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99587 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46997 * 90.00280 * 22 20 18 24 24 H 1.48505 * 109.47127 * 210.00117 * 22 20 18 25 25 H 1.48497 * 109.47491 * 329.99898 * 22 20 18 26 26 C 1.47663 * 91.08210 * 335.67797 * 17 16 15 27 27 C 1.52668 * 113.20220 * 57.43727 * 15 14 13 28 28 C 1.46890 * 120.49462 * 359.97438 * 12 10 9 29 29 O 1.43742 * 109.87560 * 238.99587 * 2 1 3 30 30 H 1.08999 * 109.47197 * 179.55458 * 1 2 3 31 31 H 1.08999 * 109.46906 * 299.54803 * 1 2 3 32 32 H 1.08997 * 109.47546 * 59.55406 * 1 2 3 33 33 H 1.09003 * 110.48634 * 240.12977 * 4 2 1 34 34 H 1.09000 * 110.48966 * 2.77667 * 4 2 1 35 35 H 1.09005 * 110.90587 * 262.68291 * 5 4 2 36 36 H 1.08999 * 110.90992 * 139.07940 * 5 4 2 37 37 H 1.09001 * 109.47468 * 60.52504 * 8 6 5 38 38 H 1.09001 * 109.47219 * 300.52085 * 8 6 5 39 39 H 1.08996 * 109.47348 * 60.00048 * 9 8 6 40 40 H 1.09005 * 109.47375 * 299.99460 * 9 8 6 41 41 H 1.09003 * 109.58906 * 115.80263 * 13 12 10 42 42 H 1.09006 * 109.70837 * 355.43994 * 13 12 10 43 43 H 1.08998 * 109.52281 * 67.51120 * 14 13 12 44 44 H 1.09007 * 109.52257 * 187.69780 * 14 13 12 45 45 H 1.09000 * 113.79323 * 23.30000 * 16 15 14 46 46 H 1.08998 * 113.78847 * 154.76423 * 16 15 14 47 47 H 0.96994 * 119.99632 * 180.02562 * 21 20 18 48 48 H 1.09000 * 113.78825 * 270.04663 * 26 17 16 49 49 H 1.08998 * 113.89440 * 138.59742 * 26 17 16 50 50 H 1.08998 * 109.52181 * 182.65197 * 27 15 14 51 51 H 1.08997 * 109.56905 * 62.49577 * 27 15 14 52 52 H 1.09001 * 109.58491 * 244.19177 * 28 12 10 53 53 H 1.09006 * 109.59050 * 4.62314 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0540 -0.7499 1.2400 5 6 2.9196 -1.8923 0.6549 6 6 3.2379 -1.3631 -0.7666 7 1 4.0690 -0.6584 -0.7393 8 6 3.5474 -2.5221 -1.7162 9 6 3.8701 -1.9702 -3.1063 10 6 4.1744 -3.1119 -4.0418 11 8 4.1373 -4.2543 -3.6365 12 7 4.4887 -2.8632 -5.3286 13 6 4.7877 -3.9676 -6.2497 14 6 6.1705 -3.7326 -6.8691 15 6 6.2204 -2.3282 -7.4655 16 6 5.4301 -2.1874 -8.7738 17 7 6.6926 -2.5409 -9.4533 18 6 7.0070 -3.0933 -10.6662 19 1 8.0406 -3.2550 -10.9343 20 6 5.9971 -3.4455 -11.5511 21 7 4.7374 -3.2489 -11.2241 22 14 6.4260 -4.1984 -13.2059 23 1 6.4876 -5.6764 -13.0762 24 1 5.3864 -3.8317 -14.2010 25 1 7.7449 -3.6856 -13.6563 26 6 7.4803 -2.0601 -8.3005 27 6 5.9180 -1.2314 -6.4475 28 6 4.5374 -1.4837 -5.8309 29 8 2.0187 -0.6963 -1.1587 30 1 -0.3633 -1.0276 -0.0080 31 1 -0.3633 0.5068 0.8940 32 1 -0.3634 0.5207 -0.8859 33 1 2.6620 -0.0884 1.8572 34 1 1.2247 -1.1573 1.8182 35 1 2.3540 -2.8228 0.6059 36 1 3.8332 -2.0241 1.2345 37 1 2.6818 -3.1815 -1.7791 38 1 4.4038 -3.0816 -1.3397 39 1 4.7358 -1.3109 -3.0435 40 1 3.0137 -1.4108 -3.4830 41 1 4.0351 -4.0004 -7.0375 42 1 4.7873 -4.9115 -5.7044 43 1 6.9357 -3.8287 -6.0990 44 1 6.3478 -4.4681 -7.6539 45 1 4.6427 -2.9314 -8.8942 46 1 5.0917 -1.1712 -8.9759 47 1 4.0318 -3.4954 -11.8423 48 1 7.7511 -1.0060 -8.3620 49 1 8.3230 -2.7016 -8.0432 50 1 5.9232 -0.2614 -6.9447 51 1 6.6746 -1.2427 -5.6630 52 1 3.7674 -1.3438 -6.5897 53 1 4.3725 -0.7889 -5.0074 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035853608.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:00 Heat of formation + Delta-G solvation = -61.526616 kcal Electronic energy + Delta-G solvation = -29917.309749 eV Core-core repulsion = 25982.135548 eV Total energy + Delta-G solvation = -3935.174201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.57404 -40.57696 -39.99280 -37.06303 -34.94589 -34.40437 -33.14626 -32.49127 -32.00059 -31.19511 -28.68149 -27.45402 -26.69514 -25.14621 -24.59460 -23.65303 -22.75617 -21.94776 -21.80741 -20.42445 -18.95933 -18.62728 -17.89216 -17.61147 -16.94014 -16.77373 -16.75312 -16.32681 -16.05809 -15.79689 -15.56543 -15.13284 -14.96915 -14.70366 -14.42716 -14.11308 -14.01703 -13.95553 -13.66116 -13.51660 -13.37059 -13.09869 -13.08374 -12.92415 -12.78171 -12.67169 -12.55204 -12.51000 -12.18684 -12.13269 -12.00960 -11.73497 -11.65665 -11.59675 -11.51462 -11.46614 -11.13395 -11.00769 -10.82182 -10.66925 -10.51867 -9.56944 -8.86118 -7.88410 -5.19986 1.43793 1.45453 1.53649 1.68100 2.06240 2.48014 2.91422 3.32393 3.44507 3.49079 3.62690 3.74788 3.78649 3.97836 4.00912 4.04241 4.07791 4.18799 4.20090 4.32857 4.39912 4.42769 4.46798 4.51625 4.58161 4.68426 4.68898 4.74394 4.77359 4.82122 4.84818 4.86663 4.94293 4.96741 4.98415 5.00445 5.02866 5.13486 5.14783 5.17819 5.22038 5.23843 5.28681 5.32898 5.35871 5.41524 5.57263 5.61358 5.78377 5.99354 6.13399 6.51411 6.95758 7.21502 7.64093 8.61631 9.28150 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026794 B = 0.002058 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.768653 B =13601.083593 C =13736.879122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 H 0.075 0.925 4 C -0.148 4.148 5 C -0.152 4.152 6 C 0.077 3.923 7 H 0.088 0.912 8 C -0.092 4.092 9 C -0.127 4.127 10 C 0.509 3.491 11 O -0.592 6.592 12 N -0.605 5.605 13 C 0.121 3.879 14 C -0.085 4.085 15 C -0.085 4.085 16 C 0.174 3.826 17 N -0.642 5.642 18 C -0.229 4.229 19 H 0.079 0.921 20 C -0.069 4.069 21 N -0.952 5.952 22 Si 0.974 3.026 23 H -0.288 1.288 24 H -0.295 1.295 25 H -0.270 1.270 26 C 0.124 3.876 27 C -0.110 4.110 28 C 0.108 3.892 29 O -0.394 6.394 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.121 0.879 40 H 0.106 0.894 41 H 0.051 0.949 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.050 0.950 45 H 0.036 0.964 46 H 0.016 0.984 47 H 0.246 0.754 48 H 0.051 0.949 49 H 0.047 0.953 50 H 0.087 0.913 51 H 0.085 0.915 52 H 0.064 0.936 53 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.694 9.830 27.493 29.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.006 3.994 3 H 0.093 0.907 4 C -0.186 4.186 5 C -0.189 4.189 6 C 0.020 3.980 7 H 0.106 0.894 8 C -0.130 4.130 9 C -0.167 4.167 10 C 0.300 3.700 11 O -0.473 6.473 12 N -0.337 5.337 13 C -0.002 4.002 14 C -0.124 4.124 15 C -0.086 4.086 16 C 0.049 3.951 17 N -0.368 5.368 18 C -0.358 4.358 19 H 0.097 0.903 20 C -0.261 4.261 21 N -0.601 5.601 22 Si 0.803 3.197 23 H -0.215 1.215 24 H -0.222 1.222 25 H -0.195 1.195 26 C 0.000 4.000 27 C -0.149 4.149 28 C -0.014 4.014 29 O -0.314 6.314 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.139 0.861 40 H 0.124 0.876 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.054 0.946 46 H 0.033 0.967 47 H 0.055 0.945 48 H 0.068 0.932 49 H 0.065 0.935 50 H 0.106 0.894 51 H 0.104 0.896 52 H 0.082 0.918 53 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.859 9.116 27.175 28.922 hybrid contribution 0.005 -0.711 -1.673 1.818 sum -3.854 8.405 25.502 27.126 Atomic orbital electron populations 1.21950 0.93697 1.02320 1.02862 1.22889 0.95410 0.96094 0.85048 0.90694 1.23017 1.00469 0.97465 0.97645 1.23168 1.01230 0.98882 0.95662 1.23237 0.88069 0.93369 0.93299 0.89377 1.21321 1.02153 0.96480 0.93025 1.21677 1.05085 0.96003 0.93898 1.21410 0.75197 0.91113 0.82320 1.90645 1.54712 1.25197 1.76738 1.48207 1.67851 1.08188 1.09468 1.21344 0.96370 0.90629 0.91853 1.21326 0.96434 0.95855 0.98766 1.22134 0.96868 0.95663 0.93923 1.22147 0.90023 0.95884 0.87022 1.46360 1.04401 1.70400 1.15636 1.19376 0.92645 1.31612 0.92161 0.90324 1.25556 0.95300 1.03219 1.02065 1.70000 0.98760 1.54438 1.36933 0.85144 0.77103 0.77977 0.79519 1.21495 1.22161 1.19479 1.22789 0.94556 0.97202 0.85488 1.21783 0.97208 0.97931 0.97943 1.21942 0.97672 0.81368 1.00372 1.88894 1.40343 1.67915 1.34273 0.92905 0.89585 0.92642 0.89133 0.89931 0.91400 0.88672 0.92774 0.89942 0.86059 0.87623 0.93054 0.90382 0.90952 0.93126 0.94594 0.96670 0.94477 0.93178 0.93470 0.89412 0.89636 0.91809 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.36 71.98 0.67 -1.13 16 2 C 0.06 0.81 4.06 30.97 0.13 0.94 16 3 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.15 -1.43 6.64 31.58 0.21 -1.22 16 5 C -0.15 -1.79 6.59 31.89 0.21 -1.58 16 6 C 0.08 1.12 3.33 31.28 0.10 1.22 16 7 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 8 C -0.09 -1.70 4.28 30.60 0.13 -1.57 16 9 C -0.13 -2.34 3.95 29.85 0.12 -2.22 16 10 C 0.51 14.01 7.69 87.66 0.67 14.69 16 11 O -0.59 -20.98 15.38 -3.03 -0.05 -21.03 16 12 N -0.61 -16.84 2.94 -818.63 -2.41 -19.25 16 13 C 0.12 4.10 6.30 86.42 0.54 4.64 16 14 C -0.09 -2.98 5.21 30.59 0.16 -2.82 16 15 C -0.08 -2.93 0.77 -52.03 -0.04 -2.97 16 16 C 0.17 8.07 6.31 86.32 0.55 8.62 16 17 N -0.64 -32.81 3.53 -722.54 -2.55 -35.36 16 18 C -0.23 -13.03 10.70 84.03 0.90 -12.13 16 19 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 20 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 21 N -0.95 -58.17 11.39 21.65 0.25 -57.92 16 22 Si 0.97 46.71 29.55 68.60 2.03 48.74 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 25 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 26 C 0.12 4.85 8.07 86.32 0.70 5.54 16 27 C -0.11 -2.67 5.25 30.58 0.16 -2.51 16 28 C 0.11 2.43 6.23 86.40 0.54 2.97 16 29 O -0.39 -7.16 10.56 -148.98 -1.57 -8.74 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.08 0.72 7.70 -2.39 -0.02 0.70 16 35 H 0.07 0.95 8.06 -2.38 -0.02 0.93 16 36 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 38 H 0.08 1.53 8.10 -2.39 -0.02 1.51 16 39 H 0.12 1.54 7.72 -2.39 -0.02 1.52 16 40 H 0.11 1.87 7.68 -2.38 -0.02 1.85 16 41 H 0.05 1.94 7.52 -2.39 -0.02 1.92 16 42 H 0.08 2.76 6.99 -2.38 -0.02 2.74 16 43 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.05 2.12 8.01 -2.38 -0.02 2.10 16 45 H 0.04 1.91 6.47 -2.39 -0.02 1.90 16 46 H 0.02 0.73 8.07 -2.39 -0.02 0.71 16 47 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 48 H 0.05 1.81 8.09 -2.39 -0.02 1.79 16 49 H 0.05 1.77 8.09 -2.39 -0.02 1.75 16 50 H 0.09 1.98 8.12 -2.39 -0.02 1.96 16 51 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 52 H 0.06 1.60 8.09 -2.39 -0.02 1.58 16 53 H 0.12 1.78 5.89 -2.38 -0.01 1.77 16 Total: -1.00 -74.04 407.01 2.77 -71.27 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.86 Total: 15.35 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 6.22 Total: 6.94 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -4.71 Total: -112.53 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -1.62 Total: -29.76 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -74.04 2.77 -71.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035853608.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.743 kcal (2) G-P(sol) polarization free energy of solvation -74.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds