Wall clock time and date at job start Tue Mar 31 2020 20:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 110.67725 * 2 1 4 4 C 1.54989 * 110.62060 * 237.02820 * 2 1 3 5 5 C 1.54807 * 102.09769 * 204.47616 * 4 2 1 6 6 C 1.54107 * 104.18715 * 20.87991 * 5 4 2 7 7 H 1.08995 * 109.87791 * 242.45957 * 6 5 4 8 8 C 1.52996 * 109.87993 * 121.45353 * 6 5 4 9 9 C 1.52997 * 109.47281 * 175.00285 * 8 6 5 10 10 C 1.50696 * 109.47082 * 180.02562 * 9 8 6 11 11 O 1.21274 * 120.00123 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99811 * 180.27633 * 10 9 8 13 13 C 1.46883 * 120.46926 * 359.44736 * 12 10 9 14 14 C 1.52860 * 109.02162 * 235.49026 * 13 12 10 15 15 C 1.52668 * 109.17376 * 307.81798 * 14 13 12 16 16 C 1.53487 * 113.62232 * 188.98899 * 15 14 13 17 17 N 1.47666 * 85.98913 * 137.70797 * 16 15 14 18 18 C 1.36938 * 134.45808 * 155.70126 * 17 16 15 19 19 H 1.07997 * 119.99741 * 187.04990 * 18 17 16 20 20 C 1.38807 * 119.99691 * 7.05856 * 18 17 16 21 21 N 1.31615 * 120.00426 * 7.58639 * 20 18 17 22 22 Si 1.86800 * 119.99794 * 187.58754 * 20 18 17 23 23 H 1.48501 * 109.47328 * 94.81345 * 22 20 18 24 24 H 1.48506 * 109.47413 * 214.81086 * 22 20 18 25 25 H 1.48497 * 109.47199 * 334.81246 * 22 20 18 26 26 C 1.47670 * 91.08762 * 335.68161 * 17 16 15 27 27 C 1.52667 * 113.18903 * 57.45746 * 15 14 13 28 28 C 1.46880 * 120.46834 * 179.72332 * 12 10 9 29 29 O 1.43745 * 107.28898 * 2.02921 * 6 5 4 30 30 H 1.08996 * 109.47296 * 182.97126 * 1 2 3 31 31 H 1.09001 * 109.47001 * 302.96974 * 1 2 3 32 32 H 1.08995 * 109.46741 * 62.96842 * 1 2 3 33 33 H 1.09008 * 110.90695 * 86.27875 * 4 2 1 34 34 H 1.08995 * 110.90630 * 322.67602 * 4 2 1 35 35 H 1.09004 * 110.48989 * 262.20822 * 5 4 2 36 36 H 1.09000 * 110.60518 * 139.61181 * 5 4 2 37 37 H 1.08996 * 109.47213 * 55.00070 * 8 6 5 38 38 H 1.09001 * 109.46714 * 295.00241 * 8 6 5 39 39 H 1.09003 * 109.46952 * 60.00107 * 9 8 6 40 40 H 1.08997 * 109.47145 * 300.00578 * 9 8 6 41 41 H 1.09006 * 109.58820 * 355.31408 * 13 12 10 42 42 H 1.08992 * 109.59188 * 115.74543 * 13 12 10 43 43 H 1.08996 * 109.61165 * 187.83448 * 14 13 12 44 44 H 1.09003 * 109.38364 * 67.65448 * 14 13 12 45 45 H 1.08993 * 113.78986 * 251.97912 * 16 15 14 46 46 H 1.08999 * 113.78854 * 23.43982 * 16 15 14 47 47 H 0.97004 * 120.00612 * 180.02562 * 21 20 18 48 48 H 1.08999 * 113.79197 * 270.05054 * 26 17 16 49 49 H 1.08992 * 113.79220 * 138.58052 * 26 17 16 50 50 H 1.08999 * 109.53681 * 182.51900 * 27 15 14 51 51 H 1.09002 * 109.53447 * 62.30052 * 27 15 14 52 52 H 1.09002 * 109.59208 * 244.25745 * 28 12 10 53 53 H 1.08999 * 109.58942 * 4.54463 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0199 0.0000 4 6 2.0758 -0.7895 -1.2170 5 6 3.4795 -1.2168 -0.7234 6 6 3.3840 -1.1253 0.8120 7 1 4.0873 -0.3800 1.1834 8 6 3.6935 -2.4882 1.4346 9 6 3.7187 -2.3587 2.9589 10 6 4.0242 -3.7009 3.5721 11 8 4.2036 -4.6661 2.8602 12 7 4.0920 -3.8299 4.9120 13 6 3.8818 -2.6666 5.7838 14 6 5.0935 -2.5067 6.7018 15 6 5.3682 -3.8334 7.4054 16 6 6.4250 -3.7345 8.5141 17 7 5.5284 -4.6027 9.3032 18 6 5.7082 -5.4710 10.3468 19 1 4.8874 -6.0862 10.6848 20 6 6.9452 -5.5602 10.9701 21 7 7.9008 -4.7095 10.6611 22 14 7.2537 -6.8878 12.2476 23 1 7.8885 -8.0624 11.5975 24 1 8.1548 -6.3593 13.3031 25 1 5.9632 -7.2970 12.8578 26 6 4.3601 -4.1591 8.5165 27 6 5.6041 -4.9898 6.4370 28 6 4.3830 -5.1345 5.5208 29 8 2.0385 -0.7351 1.1339 30 1 -0.3634 -1.0262 0.0533 31 1 -0.3633 0.5593 0.8622 32 1 -0.3632 0.4670 -0.9154 33 1 2.1510 -0.1478 -2.0949 34 1 1.4550 -1.6607 -1.4256 35 1 4.2407 -0.5333 -1.0996 36 1 3.6998 -2.2388 -1.0317 37 1 4.6650 -2.8359 1.0835 38 1 2.9245 -3.2037 1.1434 39 1 2.7471 -2.0110 3.3101 40 1 4.4875 -1.6431 3.2501 41 1 3.7658 -1.7699 5.1750 42 1 2.9873 -2.8192 6.3875 43 1 4.8904 -1.7354 7.4447 44 1 5.9623 -2.2224 6.1080 45 1 7.3759 -4.2014 8.2579 46 1 6.5389 -2.7312 8.9246 47 1 8.7654 -4.7721 11.0965 48 1 3.8604 -3.2820 8.9277 49 1 3.6701 -4.9636 8.2622 50 1 5.7491 -5.9123 6.9992 51 1 6.4894 -4.7860 5.8347 52 1 3.5244 -5.4646 6.1056 53 1 4.5946 -5.8637 4.7388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035853611.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:05 Heat of formation + Delta-G solvation = -62.631266 kcal Electronic energy + Delta-G solvation = -29816.661745 eV Core-core repulsion = 25881.439643 eV Total energy + Delta-G solvation = -3935.222103 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.59845 -40.59597 -39.99003 -37.07472 -34.93062 -34.40720 -33.11998 -32.51036 -32.03893 -31.21915 -28.74001 -27.46777 -26.72732 -25.08682 -24.57522 -23.56393 -22.75597 -22.10979 -21.78547 -20.47025 -18.87982 -18.68756 -17.88729 -17.47466 -17.08017 -16.88685 -16.68800 -16.23657 -16.11731 -15.79708 -15.59707 -15.12044 -14.86272 -14.70617 -14.65437 -14.06292 -14.04225 -13.88316 -13.73110 -13.53377 -13.31437 -13.15220 -12.95096 -12.91826 -12.80290 -12.71862 -12.61801 -12.49584 -12.17382 -12.14564 -12.01212 -11.75211 -11.68897 -11.66051 -11.50036 -11.43085 -11.17680 -11.03414 -10.78609 -10.67272 -10.51070 -9.56684 -8.88450 -7.91872 -5.22117 1.43343 1.45190 1.53758 1.68171 2.07333 2.47426 2.91281 3.30797 3.41628 3.51191 3.62270 3.69940 3.83006 3.96441 3.99897 4.02572 4.07153 4.19120 4.20505 4.31067 4.34128 4.44250 4.45284 4.55486 4.59060 4.67397 4.70835 4.72927 4.75780 4.78448 4.84140 4.87023 4.92514 4.97359 4.98269 5.01335 5.06170 5.13524 5.14250 5.21016 5.21921 5.25523 5.26329 5.32386 5.35514 5.36303 5.55451 5.59591 5.76100 5.94986 6.12176 6.50226 6.93281 7.22000 7.62206 8.60520 9.26479 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.032606 B = 0.001974 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.528451 B =14182.729027 C =14385.566800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.063 3.937 3 H 0.079 0.921 4 C -0.149 4.149 5 C -0.154 4.154 6 C 0.078 3.922 7 H 0.082 0.918 8 C -0.096 4.096 9 C -0.128 4.128 10 C 0.509 3.491 11 O -0.591 6.591 12 N -0.607 5.607 13 C 0.112 3.888 14 C -0.113 4.113 15 C -0.082 4.082 16 C 0.176 3.824 17 N -0.639 5.639 18 C -0.230 4.230 19 H 0.081 0.919 20 C -0.069 4.069 21 N -0.954 5.954 22 Si 0.975 3.025 23 H -0.289 1.289 24 H -0.295 1.295 25 H -0.267 1.267 26 C 0.128 3.872 27 C -0.089 4.089 28 C 0.123 3.877 29 O -0.391 6.391 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.020 0.980 46 H 0.019 0.981 47 H 0.247 0.753 48 H 0.048 0.952 49 H 0.050 0.950 50 H 0.055 0.945 51 H 0.055 0.945 52 H 0.072 0.928 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.187 13.446 -24.538 30.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.006 3.994 3 H 0.097 0.903 4 C -0.186 4.186 5 C -0.192 4.192 6 C 0.020 3.980 7 H 0.100 0.900 8 C -0.134 4.134 9 C -0.168 4.168 10 C 0.300 3.700 11 O -0.473 6.473 12 N -0.339 5.339 13 C -0.010 4.010 14 C -0.152 4.152 15 C -0.083 4.083 16 C 0.051 3.949 17 N -0.365 5.365 18 C -0.358 4.358 19 H 0.099 0.901 20 C -0.262 4.262 21 N -0.604 5.604 22 Si 0.803 3.197 23 H -0.217 1.217 24 H -0.222 1.222 25 H -0.191 1.191 26 C 0.004 3.996 27 C -0.127 4.127 28 C 0.000 4.000 29 O -0.311 6.311 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.128 0.872 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.089 0.911 45 H 0.039 0.961 46 H 0.037 0.963 47 H 0.056 0.944 48 H 0.066 0.934 49 H 0.068 0.932 50 H 0.073 0.927 51 H 0.074 0.926 52 H 0.090 0.910 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.077 12.735 -24.442 30.506 hybrid contribution 0.933 -0.977 1.268 1.852 sum -12.144 11.759 -23.175 28.685 Atomic orbital electron populations 1.21784 0.92763 1.02541 1.03181 1.23307 0.95660 0.95593 0.84793 0.90348 1.23179 0.95813 1.00812 0.98822 1.23021 0.98476 1.03299 0.94410 1.22802 0.84705 0.95583 0.94899 0.90011 1.21477 1.02297 0.96137 0.93505 1.21683 1.05386 0.93289 0.96398 1.21378 0.75294 0.91850 0.81518 1.90646 1.52556 1.42581 1.61484 1.48232 1.69488 1.10374 1.05819 1.21857 0.97958 0.88248 0.92919 1.21718 0.98895 0.95720 0.98836 1.22098 0.96926 0.95913 0.93371 1.22040 0.93343 0.91956 0.87583 1.46447 1.05406 1.47037 1.37647 1.19408 0.96577 1.12514 1.07350 0.90144 1.25612 0.96890 1.01506 1.02229 1.70016 1.04276 1.38822 1.47254 0.85113 0.77792 0.78471 0.78303 1.21669 1.22174 1.19140 1.22776 0.90855 0.96799 0.89204 1.21355 0.97563 0.97890 0.95923 1.21416 0.97196 0.85510 0.95892 1.88876 1.28335 1.73846 1.40081 0.92769 0.92099 0.89439 0.88576 0.91113 0.89110 0.90663 0.90584 0.92601 0.87207 0.86645 0.86478 0.90095 0.89334 0.91150 0.96132 0.96348 0.94396 0.93446 0.93222 0.92655 0.92593 0.90964 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.66 71.98 0.69 -0.82 16 2 C 0.06 0.76 3.98 31.27 0.12 0.89 16 3 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 4 C -0.15 -1.51 6.59 31.89 0.21 -1.30 16 5 C -0.15 -1.75 6.64 31.59 0.21 -1.54 16 6 C 0.08 1.11 3.41 30.97 0.11 1.21 16 7 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 8 C -0.10 -1.75 3.99 30.59 0.12 -1.62 16 9 C -0.13 -2.26 3.95 29.85 0.12 -2.14 16 10 C 0.51 13.22 7.69 87.66 0.67 13.89 16 11 O -0.59 -20.13 15.37 -3.01 -0.05 -20.18 16 12 N -0.61 -15.22 2.95 -819.50 -2.42 -17.64 16 13 C 0.11 2.18 6.19 86.26 0.53 2.72 16 14 C -0.11 -2.80 5.24 30.44 0.16 -2.64 16 15 C -0.08 -2.84 0.77 -52.03 -0.04 -2.88 16 16 C 0.18 8.32 6.43 86.31 0.56 8.88 16 17 N -0.64 -32.71 3.52 -722.64 -2.54 -35.26 16 18 C -0.23 -13.06 10.68 84.03 0.90 -12.17 16 19 H 0.08 4.40 7.84 -2.91 -0.02 4.37 16 20 C -0.07 -4.04 5.49 84.86 0.47 -3.58 16 21 N -0.95 -58.86 11.77 21.65 0.25 -58.61 16 22 Si 0.97 46.74 29.56 68.60 2.03 48.77 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 26 C 0.13 4.93 7.73 86.32 0.67 5.60 16 27 C -0.09 -3.06 5.21 30.60 0.16 -2.90 16 28 C 0.12 3.62 6.30 86.42 0.54 4.16 16 29 O -0.39 -6.69 10.54 -148.98 -1.57 -8.26 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.10 0.61 8.14 -2.38 -0.02 0.60 16 34 H 0.07 0.81 8.06 -2.39 -0.02 0.79 16 35 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.07 0.94 7.70 -2.39 -0.02 0.92 16 37 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 38 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 39 H 0.11 1.75 7.68 -2.39 -0.02 1.73 16 40 H 0.12 1.52 7.71 -2.39 -0.02 1.50 16 41 H 0.12 1.52 5.89 -2.38 -0.01 1.51 16 42 H 0.08 1.48 8.07 -2.39 -0.02 1.46 16 43 H 0.09 2.05 8.12 -2.39 -0.02 2.03 16 44 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.02 1.10 7.66 -2.39 -0.02 1.08 16 46 H 0.02 0.91 8.09 -2.39 -0.02 0.89 16 47 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 48 H 0.05 1.71 8.07 -2.39 -0.02 1.69 16 49 H 0.05 1.82 7.41 -2.39 -0.02 1.80 16 50 H 0.05 2.23 8.01 -2.39 -0.02 2.21 16 51 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 52 H 0.07 2.05 7.49 -2.39 -0.02 2.03 16 53 H 0.08 2.45 6.97 -2.39 -0.02 2.44 16 Total: -1.00 -74.44 407.54 2.77 -71.67 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.86 Total: 13.74 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 6.20 Total: 5.77 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -4.70 Total: -111.51 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -1.62 Total: -28.44 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -74.44 2.77 -71.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035853611.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.038 kcal (2) G-P(sol) polarization free energy of solvation -74.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds