Wall clock time and date at job start Tue Mar 31 2020 21:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.52748 * 2 1 4 4 C 1.53197 * 109.49408 * 120.07840 * 2 1 3 5 5 N 1.46927 * 108.77296 * 174.58861 * 4 2 1 6 6 C 1.34778 * 120.63191 * 126.37240 * 5 4 2 7 7 O 1.21276 * 120.00008 * 6.04880 * 6 5 4 8 8 C 1.50704 * 120.00092 * 186.05901 * 6 5 4 9 9 C 1.52999 * 109.60969 * 298.33004 * 8 6 5 10 10 C 1.53005 * 117.50265 * 0.21461 * 9 8 6 11 11 C 1.53005 * 117.50026 * 291.55108 * 9 8 6 12 12 C 1.53171 * 109.54675 * 58.54950 * 8 6 5 13 13 C 1.53096 * 109.21170 * 62.91903 * 12 8 6 14 14 O 1.42903 * 109.41418 * 57.57834 * 13 12 8 15 15 C 1.42897 * 114.09964 * 298.83884 * 14 13 12 16 16 C 1.53099 * 109.41358 * 61.15595 * 15 14 13 17 17 C 1.46929 * 118.73897 * 306.63941 * 5 4 2 18 18 C 1.52762 * 109.00748 * 53.31088 * 17 5 4 19 19 C 1.53033 * 109.38314 * 305.59235 * 18 17 5 20 20 H 1.09000 * 109.44893 * 181.25761 * 19 18 17 21 21 N 1.46507 * 109.45837 * 301.21415 * 19 18 17 22 22 C 1.36936 * 120.00079 * 275.07069 * 21 19 18 23 23 H 1.07998 * 119.99825 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99661 * 179.97438 * 22 21 19 25 25 N 1.31614 * 120.00187 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99762 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47509 * 59.99780 * 26 24 22 28 28 H 1.48507 * 109.47291 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47158 * 299.99838 * 26 24 22 30 30 H 1.08997 * 109.47357 * 299.92234 * 1 2 3 31 31 H 1.09006 * 109.46629 * 59.92476 * 1 2 3 32 32 H 1.09000 * 109.47066 * 179.91601 * 1 2 3 33 33 H 1.08999 * 109.58676 * 54.80038 * 4 2 1 34 34 H 1.09002 * 109.58601 * 294.37371 * 4 2 1 35 35 H 1.09004 * 115.55218 * 145.89080 * 9 8 6 36 36 H 1.09000 * 117.49555 * 359.97438 * 10 9 8 37 37 H 1.08999 * 117.49640 * 145.02592 * 10 9 8 38 38 H 1.09002 * 117.50154 * 214.98168 * 11 9 8 39 39 H 1.09002 * 117.49967 * 0.02562 * 11 9 8 40 40 H 1.08998 * 109.52354 * 302.98786 * 12 8 6 41 41 H 1.08996 * 109.52513 * 182.85308 * 12 8 6 42 42 H 1.09007 * 109.48072 * 177.55988 * 13 12 8 43 43 H 1.08992 * 109.48501 * 297.58001 * 13 12 8 44 44 H 1.08994 * 109.48641 * 181.14181 * 15 14 13 45 45 H 1.09006 * 109.48311 * 301.16539 * 15 14 13 46 46 H 1.09000 * 109.51988 * 62.29838 * 16 15 14 47 47 H 1.09002 * 109.52333 * 182.42360 * 16 15 14 48 48 H 1.08999 * 109.58380 * 173.14835 * 17 5 4 49 49 H 1.08997 * 109.58455 * 293.56798 * 17 5 4 50 50 H 1.08999 * 109.56436 * 185.54652 * 18 17 5 51 51 H 1.09003 * 109.35885 * 65.49944 * 18 17 5 52 52 H 0.97002 * 119.99294 * 95.07220 * 21 19 18 53 53 H 0.97002 * 120.00340 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0412 -0.7238 1.2497 5 7 3.5046 -0.8291 1.1697 6 6 4.2811 -0.3856 2.1781 7 8 3.7733 0.0046 3.2080 8 6 5.7804 -0.3743 2.0257 9 6 6.2860 -1.8030 1.8162 10 6 5.2455 -2.9246 1.7939 11 6 6.1795 -2.7704 2.9969 12 6 6.1664 0.4878 0.8199 13 6 5.7272 1.9325 1.0723 14 8 6.3325 2.4098 2.2756 15 6 5.9690 1.6719 3.4440 16 6 6.4179 0.2166 3.2870 17 6 4.1055 -1.4216 -0.0330 18 6 3.5709 -0.6952 -1.2659 19 6 2.0409 -0.7232 -1.2482 20 1 1.6585 -0.2246 -2.1389 21 7 1.5784 -2.1132 -1.2307 22 6 1.4483 -2.8064 -2.4044 23 1 1.6870 -2.3285 -3.3431 24 6 1.0105 -4.1236 -2.3877 25 7 0.7211 -4.7064 -1.2436 26 14 0.8337 -5.0694 -3.9887 27 1 2.1506 -5.1377 -4.6715 28 1 0.3541 -6.4451 -3.7007 29 1 -0.1439 -4.3776 -4.8669 30 1 -0.3634 0.5126 0.8906 31 1 -0.3633 0.5150 -0.8894 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6052 -1.7216 1.2981 34 1 1.7637 -0.1578 2.1390 35 1 7.1495 -1.9045 1.1589 36 1 4.2007 -2.6446 1.9289 37 1 5.4247 -3.7641 1.1222 38 1 6.9728 -3.5084 3.1160 39 1 5.7489 -2.3890 3.9228 40 1 5.6712 0.1074 -0.0734 41 1 7.2468 0.4549 0.6796 42 1 6.0383 2.5585 0.2358 43 1 4.6424 1.9708 1.1709 44 1 6.4543 2.1098 4.3162 45 1 4.8873 1.7067 3.5741 46 1 7.5035 0.1780 3.1975 47 1 6.1035 -0.3576 4.1585 48 1 5.1895 -1.3160 0.0103 49 1 3.8413 -2.4775 -0.0912 50 1 3.9336 -1.1898 -2.1669 51 1 3.9160 0.3387 -1.2540 52 1 1.3644 -2.5424 -0.3875 53 1 0.4155 -5.6269 -1.2319 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036119528.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:37 Heat of formation + Delta-G solvation = -42.297517 kcal Electronic energy + Delta-G solvation = -33045.244417 eV Core-core repulsion = 29110.904052 eV Total energy + Delta-G solvation = -3934.340365 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.73099 -40.02129 -38.72658 -38.18340 -35.84787 -34.53258 -33.95439 -32.95470 -31.96193 -30.93069 -28.11136 -27.09413 -26.17064 -25.38689 -24.67229 -23.55165 -22.91801 -22.40792 -22.04460 -20.33060 -19.28237 -19.15729 -17.87979 -17.53340 -17.14854 -16.88302 -16.52442 -16.49320 -15.98534 -15.86687 -15.67586 -15.34000 -14.97075 -14.84638 -14.66836 -14.40016 -14.24369 -14.15946 -13.58534 -13.37999 -13.32121 -13.00266 -12.91824 -12.81875 -12.69405 -12.62454 -12.49269 -12.29120 -12.15910 -12.14428 -11.98478 -11.95688 -11.79908 -11.55337 -11.44831 -11.28766 -11.15087 -10.95742 -10.85348 -10.40888 -10.30158 -9.52713 -8.89273 -7.86271 -5.12010 1.50894 1.51708 1.57403 1.57641 2.01040 2.61437 2.72073 2.94674 3.31538 3.47752 3.55457 3.69320 3.76805 3.88557 3.92183 3.97000 4.04304 4.09276 4.11475 4.15570 4.24076 4.33808 4.38149 4.41617 4.52622 4.58079 4.63601 4.64810 4.68119 4.73365 4.77832 4.79168 4.85579 4.87950 4.96631 5.01988 5.04514 5.05689 5.09203 5.13640 5.17476 5.20043 5.21422 5.29050 5.32504 5.36660 5.49005 5.62428 5.67948 6.23618 6.34960 6.49121 7.14940 7.43022 8.19744 8.43146 9.36645 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015956 B = 0.004045 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.404263 B = 6919.729321 C = 7509.987012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 H 0.085 0.915 4 C 0.123 3.877 5 N -0.593 5.593 6 C 0.523 3.477 7 O -0.580 6.580 8 C -0.043 4.043 9 C -0.135 4.135 10 C -0.201 4.201 11 C -0.169 4.169 12 C -0.153 4.153 13 C 0.058 3.942 14 O -0.394 6.394 15 C 0.050 3.950 16 C -0.120 4.120 17 C 0.112 3.888 18 C -0.147 4.147 19 C 0.173 3.827 20 H 0.046 0.954 21 N -0.723 5.723 22 C -0.225 4.225 23 H 0.075 0.925 24 C -0.070 4.070 25 N -0.968 5.968 26 Si 0.961 3.039 27 H -0.279 1.279 28 H -0.304 1.304 29 H -0.284 1.284 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.038 0.962 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.142 0.858 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.118 0.882 43 H 0.029 0.971 44 H 0.106 0.894 45 H 0.047 0.953 46 H 0.097 0.903 47 H 0.071 0.929 48 H 0.115 0.885 49 H 0.055 0.945 50 H 0.068 0.932 51 H 0.077 0.923 52 H 0.373 0.627 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.189 11.562 5.434 19.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 H 0.103 0.897 4 C 0.000 4.000 5 N -0.323 5.323 6 C 0.313 3.687 7 O -0.461 6.461 8 C -0.046 4.046 9 C -0.153 4.153 10 C -0.239 4.239 11 C -0.206 4.206 12 C -0.190 4.190 13 C -0.019 4.019 14 O -0.313 6.313 15 C -0.027 4.027 16 C -0.158 4.158 17 C -0.009 4.009 18 C -0.188 4.188 19 C 0.065 3.935 20 H 0.064 0.936 21 N -0.364 5.364 22 C -0.357 4.357 23 H 0.093 0.907 24 C -0.263 4.263 25 N -0.619 5.619 26 Si 0.791 3.209 27 H -0.205 1.205 28 H -0.231 1.231 29 H -0.210 1.210 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.160 0.840 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.134 0.866 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.125 0.875 42 H 0.136 0.864 43 H 0.048 0.952 44 H 0.124 0.876 45 H 0.065 0.935 46 H 0.115 0.885 47 H 0.090 0.910 48 H 0.133 0.867 49 H 0.073 0.927 50 H 0.087 0.913 51 H 0.095 0.905 52 H 0.206 0.794 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.026 11.881 5.777 19.268 hybrid contribution -1.185 -1.601 -0.470 2.047 sum 12.842 10.279 5.307 17.284 Atomic orbital electron populations 1.21601 0.94306 1.01408 1.01653 1.21607 0.96396 0.99224 0.94380 0.89709 1.21452 0.79976 0.99918 0.98643 1.48131 1.06191 1.59387 1.18596 1.20897 0.90027 0.75511 0.82252 1.90598 1.76284 1.50016 1.29162 1.20441 0.89510 0.95904 0.98772 1.22391 1.01611 0.87891 1.03371 1.23459 0.96420 1.01303 1.02685 1.23095 1.02636 1.02243 0.92580 1.22657 1.04657 0.94729 0.96949 1.22669 0.96146 0.95117 0.87964 1.87870 1.70946 1.56415 1.16032 1.22810 1.00218 0.91394 0.88229 1.21979 1.01491 0.96126 0.96155 1.22051 0.98998 0.97072 0.82774 1.22420 0.98293 1.00382 0.97711 1.20419 0.92472 0.85143 0.95506 0.93567 1.42560 1.79092 1.09216 1.05518 1.19517 1.34715 0.93811 0.87700 0.90716 1.25329 1.03646 0.98413 0.98866 1.69794 1.53903 1.12772 1.25473 0.85399 0.77833 0.77383 0.80237 1.20501 1.23076 1.21029 0.91987 0.92143 0.94246 0.93568 0.90431 0.84031 0.90153 0.88244 0.86586 0.89992 0.88296 0.87500 0.86391 0.95236 0.87624 0.93450 0.88481 0.91046 0.86722 0.92691 0.91335 0.90453 0.79387 0.94512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 9.06 71.98 0.65 -3.49 16 2 C -0.10 -2.98 2.67 -10.71 -0.03 -3.01 16 3 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 4 C 0.12 4.12 5.41 86.36 0.47 4.59 16 5 N -0.59 -17.78 1.92 -819.72 -1.58 -19.36 16 6 C 0.52 15.40 3.84 87.66 0.34 15.74 16 7 O -0.58 -20.62 13.35 -3.02 -0.04 -20.66 16 8 C -0.04 -0.95 0.37 -52.81 -0.02 -0.97 16 9 C -0.13 -2.70 3.85 -10.79 -0.04 -2.75 16 10 C -0.20 -5.26 6.90 30.62 0.21 -5.05 16 11 C -0.17 -3.61 9.64 30.62 0.30 -3.31 16 12 C -0.15 -2.79 4.53 30.68 0.14 -2.65 16 13 C 0.06 1.19 6.62 72.01 0.48 1.66 16 14 O -0.39 -9.33 10.77 -148.98 -1.60 -10.93 16 15 C 0.05 1.16 6.55 72.02 0.47 1.63 16 16 C -0.12 -2.52 4.23 30.69 0.13 -2.39 16 17 C 0.11 3.23 3.03 86.22 0.26 3.49 16 18 C -0.15 -4.28 5.44 30.53 0.17 -4.11 16 19 C 0.17 6.04 2.53 45.01 0.11 6.15 16 20 H 0.05 1.66 8.08 -2.39 -0.02 1.64 16 21 N -0.72 -32.52 3.64 -322.81 -1.18 -33.70 16 22 C -0.23 -11.47 9.93 84.03 0.83 -10.63 16 23 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 24 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 25 N -0.97 -56.88 13.06 21.65 0.28 -56.60 16 26 Si 0.96 44.47 29.55 68.60 2.03 46.50 16 27 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 28 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 29 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.04 1.49 7.53 -2.39 -0.02 1.47 16 33 H 0.05 1.81 6.64 -2.39 -0.02 1.80 16 34 H 0.08 2.65 7.05 -2.39 -0.02 2.63 16 35 H 0.14 2.14 8.05 -2.38 -0.02 2.12 16 36 H 0.08 2.64 4.95 -2.39 -0.01 2.63 16 37 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.08 1.96 7.15 -2.39 -0.02 1.94 16 40 H 0.10 1.78 4.04 -2.39 -0.01 1.77 16 41 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.12 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.03 0.72 7.38 -2.39 -0.02 0.71 16 44 H 0.11 2.04 8.14 -2.39 -0.02 2.03 16 45 H 0.05 1.37 5.88 -2.38 -0.01 1.36 16 46 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.07 1.64 6.84 -2.39 -0.02 1.62 16 48 H 0.12 2.66 3.04 -2.39 -0.01 2.65 16 49 H 0.05 1.99 6.67 -2.39 -0.02 1.98 16 50 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 51 H 0.08 1.82 7.55 -2.39 -0.02 1.80 16 52 H 0.37 18.58 5.92 -92.71 -0.55 18.03 16 53 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -63.27 378.02 3.21 -60.06 By element: Atomic # 1 Polarization: 42.77 SS G_CDS: 0.37 Total: 43.13 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 4.93 Total: -8.44 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -2.47 Total: -109.66 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -1.64 Total: -31.59 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -63.27 3.21 -60.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036119528.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.758 kcal (2) G-P(sol) polarization free energy of solvation -63.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds