Wall clock time and date at job start Tue Mar 31 2020 21:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.49712 * 2 1 4 4 C 1.53184 * 109.52500 * 239.91342 * 2 1 3 5 5 N 1.46936 * 108.77596 * 185.40228 * 4 2 1 6 6 C 1.34770 * 120.62868 * 233.61137 * 5 4 2 7 7 O 1.21286 * 120.00287 * 359.46877 * 6 5 4 8 8 C 1.50700 * 120.00014 * 179.47033 * 6 5 4 9 9 C 1.53006 * 109.54239 * 297.35128 * 8 6 5 10 10 C 1.52998 * 117.49866 * 358.39564 * 9 8 6 11 11 C 1.53000 * 117.49397 * 289.73590 * 9 8 6 12 12 C 1.53182 * 109.54474 * 177.08499 * 8 6 5 13 13 C 1.53093 * 109.16132 * 297.11207 * 12 8 6 14 14 O 1.42902 * 109.41676 * 302.39287 * 13 12 8 15 15 C 1.42904 * 114.09856 * 61.15612 * 14 13 12 16 16 C 1.53091 * 109.41419 * 298.84567 * 15 14 13 17 17 C 1.46922 * 118.73896 * 53.60339 * 5 4 2 18 18 C 1.53188 * 108.77599 * 306.39985 * 17 5 4 19 19 C 1.53040 * 109.31676 * 54.63303 * 18 17 5 20 20 H 1.09003 * 109.45944 * 178.61548 * 19 18 17 21 21 N 1.46493 * 109.45798 * 58.64414 * 19 18 17 22 22 C 1.36939 * 120.00650 * 85.00200 * 21 19 18 23 23 H 1.08000 * 119.99445 * 359.97438 * 22 21 19 24 24 C 1.38808 * 120.00504 * 179.97438 * 22 21 19 25 25 N 1.31618 * 119.99859 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99983 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47120 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.47011 * 120.00344 * 26 24 22 29 29 H 1.48500 * 109.47202 * 240.00070 * 26 24 22 30 30 H 1.08992 * 109.47314 * 299.94299 * 1 2 3 31 31 H 1.09006 * 109.46727 * 59.94290 * 1 2 3 32 32 H 1.09002 * 109.46753 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.58912 * 305.18183 * 4 2 1 34 34 H 1.08994 * 109.59054 * 65.61378 * 4 2 1 35 35 H 1.08999 * 115.54636 * 144.06550 * 9 8 6 36 36 H 1.09005 * 117.49981 * 0.02562 * 10 9 8 37 37 H 1.08997 * 117.49689 * 145.02048 * 10 9 8 38 38 H 1.09001 * 117.49276 * 214.97453 * 11 9 8 39 39 H 1.08995 * 117.50359 * 359.97438 * 11 9 8 40 40 H 1.08997 * 109.52437 * 57.01862 * 12 8 6 41 41 H 1.08997 * 109.52135 * 177.20601 * 12 8 6 42 42 H 1.08999 * 109.47762 * 182.40792 * 13 12 8 43 43 H 1.09004 * 109.47973 * 62.37232 * 13 12 8 44 44 H 1.09003 * 109.47874 * 178.85971 * 15 14 13 45 45 H 1.09005 * 109.47656 * 58.82938 * 15 14 13 46 46 H 1.09004 * 109.52209 * 297.69811 * 16 15 14 47 47 H 1.09003 * 109.57318 * 177.54365 * 16 15 14 48 48 H 1.09000 * 109.58765 * 186.60820 * 17 5 4 49 49 H 1.09005 * 109.58390 * 66.18330 * 17 5 4 50 50 H 1.09008 * 109.49693 * 174.58553 * 18 17 5 51 51 H 1.09005 * 109.49800 * 294.64379 * 18 17 5 52 52 H 0.97002 * 119.99865 * 264.99663 * 21 19 18 53 53 H 0.97001 * 119.99725 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0420 -0.7238 -1.2492 5 7 3.5054 -0.8285 -1.1687 6 6 4.2820 -0.3852 -2.1770 7 8 3.7738 0.0971 -3.1671 8 6 5.7819 -0.4887 -2.0744 9 6 6.2741 0.3575 -0.8985 10 6 5.2272 1.1433 -0.1066 11 6 6.1922 1.8787 -1.0399 12 6 6.4204 0.0144 -3.3728 13 6 5.9822 -0.8867 -4.5303 14 8 6.3562 -2.2370 -4.2489 15 6 5.7520 -2.7765 -3.0717 16 6 6.1809 -1.9513 -1.8556 17 6 4.1060 -1.4255 0.0319 18 6 3.5707 -0.6939 1.2668 19 6 2.0407 -0.7227 1.2487 20 1 1.6576 -0.2240 2.1390 21 7 1.5789 -2.1128 1.2309 22 6 1.4473 -2.8057 2.4047 23 1 1.6843 -2.3274 3.3436 24 6 1.0092 -4.1227 2.3879 25 7 0.7208 -4.7058 1.2437 26 14 0.8304 -5.0680 3.9891 27 1 1.2152 -4.1935 5.1259 28 1 -0.5807 -5.5007 4.1536 29 1 1.7139 -6.2613 3.9608 30 1 -0.3633 0.5129 0.8904 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6065 -1.7218 -1.2976 34 1 1.7646 -0.1582 -2.1387 35 1 7.1200 -0.0520 -0.3463 36 1 4.1876 1.0572 -0.4231 37 1 5.3845 1.2512 0.9665 38 1 6.9841 2.4702 -0.5802 39 1 5.7882 2.2767 -1.9706 40 1 6.0971 1.0374 -3.5651 41 1 7.5060 -0.0141 -3.2798 42 1 6.4675 -0.5592 -5.4497 43 1 4.9003 -0.8264 -4.6485 44 1 6.0714 -3.8104 -2.9404 45 1 4.6671 -2.7409 -3.1710 46 1 7.2617 -2.0195 -1.7319 47 1 5.6871 -2.3337 -0.9622 48 1 5.1902 -1.3229 -0.0123 49 1 3.8386 -2.4808 0.0880 50 1 3.9332 -1.1883 2.1681 51 1 3.9158 0.3400 1.2552 52 1 1.3663 -2.5425 0.3877 53 1 0.4144 -5.6260 1.2321 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036119529.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:41 Heat of formation + Delta-G solvation = -36.767952 kcal Electronic energy + Delta-G solvation = -33050.275953 eV Core-core repulsion = 29116.175368 eV Total energy + Delta-G solvation = -3934.100585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.74702 -40.06797 -38.68747 -38.13235 -35.86432 -34.61660 -33.86777 -32.96766 -32.00130 -30.93216 -28.08450 -27.07668 -26.17903 -25.46659 -24.74011 -23.57671 -22.87345 -22.44048 -22.06560 -20.17192 -19.44379 -19.24787 -17.85273 -17.56522 -17.07874 -16.79855 -16.64234 -16.35553 -16.02388 -15.79006 -15.63314 -15.49936 -15.00437 -14.88624 -14.62865 -14.38972 -14.24560 -14.02332 -13.71490 -13.43785 -13.15883 -13.03754 -12.95361 -12.87761 -12.74358 -12.60335 -12.39764 -12.36752 -12.17411 -12.04751 -12.02336 -11.85610 -11.66458 -11.56848 -11.46592 -11.32927 -11.13867 -10.91661 -10.77887 -10.42591 -10.29192 -9.50515 -8.88672 -7.87406 -5.12824 1.48905 1.50868 1.58343 1.58922 2.00963 2.60821 2.79050 2.89422 3.33029 3.47308 3.57803 3.68418 3.75728 3.88207 3.94702 3.95903 4.08645 4.09446 4.12331 4.19227 4.22587 4.32025 4.38271 4.42484 4.54410 4.56197 4.64411 4.66992 4.68434 4.71621 4.76778 4.80462 4.84765 4.87800 4.94315 5.04240 5.06040 5.06352 5.10817 5.14293 5.17713 5.24528 5.25728 5.31998 5.33112 5.39692 5.49017 5.62919 5.67990 6.18398 6.34773 6.48963 7.15119 7.42333 8.19603 8.42416 9.36255 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014277 B = 0.004104 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.696162 B = 6820.507247 C = 7336.325654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.095 4.095 3 H 0.085 0.915 4 C 0.122 3.878 5 N -0.592 5.592 6 C 0.523 3.477 7 O -0.580 6.580 8 C -0.042 4.042 9 C -0.144 4.144 10 C -0.194 4.194 11 C -0.168 4.168 12 C -0.117 4.117 13 C 0.046 3.954 14 O -0.394 6.394 15 C 0.057 3.943 16 C -0.157 4.157 17 C 0.112 3.888 18 C -0.155 4.155 19 C 0.172 3.828 20 H 0.045 0.955 21 N -0.724 5.724 22 C -0.221 4.221 23 H 0.076 0.924 24 C -0.073 4.073 25 N -0.970 5.970 26 Si 0.960 3.040 27 H -0.266 1.266 28 H -0.303 1.303 29 H -0.299 1.299 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.139 0.861 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.044 0.956 44 H 0.111 0.889 45 H 0.021 0.979 46 H 0.108 0.892 47 H 0.096 0.904 48 H 0.118 0.882 49 H 0.046 0.954 50 H 0.064 0.936 51 H 0.096 0.904 52 H 0.372 0.628 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.275 13.014 -4.835 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.115 4.115 3 H 0.104 0.896 4 C -0.001 4.001 5 N -0.323 5.323 6 C 0.313 3.687 7 O -0.461 6.461 8 C -0.045 4.045 9 C -0.163 4.163 10 C -0.231 4.231 11 C -0.205 4.205 12 C -0.155 4.155 13 C -0.030 4.030 14 O -0.313 6.313 15 C -0.020 4.020 16 C -0.194 4.194 17 C -0.009 4.009 18 C -0.195 4.195 19 C 0.064 3.936 20 H 0.063 0.937 21 N -0.365 5.365 22 C -0.353 4.353 23 H 0.094 0.906 24 C -0.265 4.265 25 N -0.622 5.622 26 Si 0.791 3.209 27 H -0.190 1.190 28 H -0.231 1.231 29 H -0.226 1.226 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.156 0.844 36 H 0.108 0.892 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.126 0.874 43 H 0.062 0.938 44 H 0.129 0.871 45 H 0.039 0.961 46 H 0.127 0.873 47 H 0.114 0.886 48 H 0.136 0.864 49 H 0.064 0.936 50 H 0.082 0.918 51 H 0.114 0.886 52 H 0.205 0.795 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.120 13.132 -5.260 19.987 hybrid contribution -1.200 -1.202 0.606 1.803 sum 12.921 11.930 -4.654 18.191 Atomic orbital electron populations 1.21609 0.94389 1.01373 1.01662 1.21598 0.96325 0.99223 0.94353 0.89637 1.21463 0.79941 0.99908 0.98773 1.48113 1.06207 1.59430 1.18521 1.20909 0.90045 0.76273 0.81507 1.90602 1.76267 1.47456 1.31778 1.20413 0.89497 0.97194 0.97439 1.22301 1.02429 0.93288 0.98234 1.23708 0.96220 1.04212 0.98971 1.23091 1.02781 0.93281 1.01309 1.21974 1.01508 0.99859 0.92171 1.22864 1.00059 0.81363 0.98729 1.87870 1.70418 1.28557 1.44464 1.22615 0.95762 0.98753 0.84891 1.22734 1.04693 0.92384 0.99609 1.22072 0.99141 0.96329 0.83381 1.22779 0.97837 1.01751 0.97093 1.20456 0.92765 0.84992 0.95410 0.93654 1.42601 1.79149 1.09295 1.05473 1.19601 1.34270 0.93754 0.87724 0.90647 1.25338 1.03779 0.98465 0.98887 1.69810 1.54163 1.12791 1.25434 0.85251 0.76298 0.78685 0.80617 1.19049 1.23052 1.22641 0.92134 0.91978 0.94305 0.93629 0.90340 0.84354 0.89219 0.86558 0.86493 0.90028 0.90419 0.88440 0.87412 0.93758 0.87140 0.96073 0.87330 0.88621 0.86439 0.93587 0.91782 0.88559 0.79465 0.94502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 9.06 71.98 0.65 -3.51 16 2 C -0.10 -2.93 2.63 -10.72 -0.03 -2.96 16 3 H 0.09 2.33 7.89 -2.39 -0.02 2.31 16 4 C 0.12 4.09 5.42 86.36 0.47 4.56 16 5 N -0.59 -17.74 1.84 -818.91 -1.51 -19.25 16 6 C 0.52 15.35 3.74 87.66 0.33 15.68 16 7 O -0.58 -20.54 13.36 -3.05 -0.04 -20.58 16 8 C -0.04 -0.94 0.37 -52.81 -0.02 -0.96 16 9 C -0.14 -2.49 3.84 -10.79 -0.04 -2.53 16 10 C -0.19 -3.66 6.08 30.62 0.19 -3.47 16 11 C -0.17 -2.75 9.65 30.62 0.30 -2.46 16 12 C -0.12 -2.48 4.21 30.69 0.13 -2.35 16 13 C 0.05 1.16 6.55 72.01 0.47 1.63 16 14 O -0.39 -10.70 10.77 -148.98 -1.60 -12.31 16 15 C 0.06 1.46 6.62 72.01 0.48 1.94 16 16 C -0.16 -3.35 4.49 30.68 0.14 -3.21 16 17 C 0.11 3.22 3.48 86.36 0.30 3.52 16 18 C -0.15 -4.44 5.22 30.67 0.16 -4.28 16 19 C 0.17 5.99 2.53 45.02 0.11 6.10 16 20 H 0.05 1.63 8.08 -2.39 -0.02 1.61 16 21 N -0.72 -32.66 3.64 -322.83 -1.17 -33.84 16 22 C -0.22 -11.29 9.93 84.03 0.83 -10.46 16 23 H 0.08 3.71 7.83 -2.91 -0.02 3.68 16 24 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 25 N -0.97 -57.36 13.06 21.65 0.28 -57.08 16 26 Si 0.96 44.66 29.55 68.60 2.03 46.69 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 28 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 29 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.04 1.47 7.54 -2.39 -0.02 1.45 16 33 H 0.05 1.79 6.64 -2.39 -0.02 1.77 16 34 H 0.08 2.68 7.01 -2.39 -0.02 2.66 16 35 H 0.14 1.80 8.03 -2.39 -0.02 1.78 16 36 H 0.09 2.16 4.39 -2.38 -0.01 2.15 16 37 H 0.12 1.85 7.16 -2.39 -0.02 1.83 16 38 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.08 1.58 7.04 -2.39 -0.02 1.56 16 40 H 0.08 1.69 6.74 -2.39 -0.02 1.68 16 41 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.04 1.38 5.91 -2.38 -0.01 1.36 16 44 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.02 0.66 7.38 -2.38 -0.02 0.64 16 46 H 0.11 1.80 8.14 -2.39 -0.02 1.79 16 47 H 0.10 2.13 4.51 -2.39 -0.01 2.12 16 48 H 0.12 2.70 3.11 -2.39 -0.01 2.69 16 49 H 0.05 1.67 7.70 -2.38 -0.02 1.65 16 50 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 51 H 0.10 2.24 4.22 -2.38 -0.01 2.23 16 52 H 0.37 18.62 5.92 -92.71 -0.55 18.07 16 53 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -64.06 373.39 3.29 -60.77 By element: Atomic # 1 Polarization: 41.48 SS G_CDS: 0.38 Total: 41.86 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 4.93 Total: -6.26 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -2.40 Total: -110.17 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -1.64 Total: -32.88 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -64.06 3.29 -60.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036119529.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.003 kcal (2) G-P(sol) polarization free energy of solvation -64.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds